Wall clock time and date at job start Wed Apr 1 2020 06:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47010 * 2 1 4 4 N 1.46505 * 109.46862 * 175.32707 * 3 2 1 5 5 C 1.36931 * 120.00000 * 80.83065 * 4 3 2 6 6 H 1.07999 * 120.00099 * 309.30148 * 5 4 3 7 7 C 1.38813 * 120.00112 * 129.29983 * 5 4 3 8 8 N 1.31611 * 120.00259 * 154.12248 * 7 5 4 9 9 Si 1.86806 * 119.99721 * 334.12499 * 7 5 4 10 10 H 1.48501 * 109.47232 * 95.54769 * 9 7 5 11 11 H 1.48501 * 109.46767 * 215.54621 * 9 7 5 12 12 H 1.48493 * 109.47232 * 335.54678 * 9 7 5 13 13 S 1.65596 * 119.99716 * 260.82703 * 4 3 2 14 14 O 1.42097 * 106.40290 * 196.58318 * 13 4 3 15 15 O 1.42105 * 106.40419 * 329.50634 * 13 4 3 16 16 C 1.76204 * 107.21678 * 83.04471 * 13 4 3 17 17 C 1.38672 * 120.41937 * 89.99862 * 16 13 4 18 18 C 1.38624 * 118.41926 * 180.02562 * 17 16 13 19 19 C 1.38234 * 119.16278 * 359.97438 * 18 17 16 20 20 S 1.76203 * 119.61629 * 180.02562 * 19 18 17 21 21 C 1.81397 * 104.44820 * 90.00249 * 20 19 18 22 22 O 1.42096 * 104.27488 * 206.07109 * 20 19 18 23 23 O 1.42098 * 104.27977 * 333.93154 * 20 19 18 24 24 N 1.31847 * 120.76203 * 0.02562 * 19 18 17 25 25 C 1.31886 * 121.72538 * 359.70602 * 24 19 18 26 26 H 1.08999 * 109.47078 * 304.77618 * 1 2 3 27 27 H 1.09006 * 109.46899 * 64.77433 * 1 2 3 28 28 H 1.08997 * 109.47265 * 184.77454 * 1 2 3 29 29 H 1.09001 * 109.47270 * 240.00351 * 2 1 3 30 30 H 1.08993 * 109.47203 * 119.99827 * 2 1 3 31 31 H 1.08998 * 109.47075 * 295.32106 * 3 2 1 32 32 H 1.08995 * 109.46824 * 55.32530 * 3 2 1 33 33 H 0.97002 * 120.00224 * 180.02562 * 8 7 5 34 34 H 1.07998 * 120.78619 * 0.02562 * 17 16 13 35 35 H 1.07999 * 120.41950 * 179.97438 * 18 17 16 36 36 H 1.08997 * 109.47337 * 59.99391 * 21 20 19 37 37 H 1.08995 * 109.47383 * 179.97438 * 21 20 19 38 38 H 1.09000 * 109.47275 * 299.99681 * 21 20 19 39 39 H 1.08007 * 119.61657 * 180.30773 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5007 1.4441 0.1125 5 6 4.2731 1.2241 -0.9966 6 1 4.0789 0.3706 -1.6292 7 6 5.3056 2.0981 -1.3078 8 7 6.3362 1.6760 -2.0091 9 14 5.2322 3.8734 -0.7313 10 1 5.9877 4.0128 0.5396 11 1 5.8340 4.7545 -1.7641 12 1 3.8166 4.2643 -0.5110 13 16 4.2177 1.7119 1.5810 14 8 5.5741 2.0386 1.3117 15 8 3.3419 2.5648 2.3056 16 6 4.2375 0.1735 2.4400 17 6 5.3134 -0.6912 2.3068 18 6 5.2856 -1.8908 3.0010 19 6 4.1944 -2.1828 3.7977 20 16 4.1469 -3.7039 4.6859 21 6 4.9247 -3.3219 6.2795 22 8 2.7609 -3.9661 4.8577 23 8 4.9695 -4.5790 3.9265 24 7 3.1887 -1.3364 3.9006 25 6 3.1836 -0.1841 3.2590 26 1 -0.3633 0.5861 0.8441 27 1 -0.3633 0.4380 -0.9297 28 1 -0.3634 -1.0241 0.0855 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.7467 1.9316 -0.9289 32 1 1.6099 1.9799 0.8451 33 1 7.0579 2.2867 -2.2263 34 1 6.1530 -0.4361 1.6771 35 1 6.1061 -2.5883 2.9203 36 1 4.3572 -2.5390 6.7825 37 1 4.9380 -4.2171 6.9012 38 1 5.9461 -2.9799 6.1125 39 1 2.3441 0.4860 3.3719 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280348463.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:30:34 Heat of formation + Delta-G solvation = -89.543496 kcal Electronic energy + Delta-G solvation = -27519.599375 eV Core-core repulsion = 23489.848574 eV Total energy + Delta-G solvation = -4029.750801 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 17.04 seconds Orbital eigenvalues (eV) -39.91234 -37.23252 -36.53211 -36.18157 -36.07415 -34.72062 -33.30508 -32.47530 -31.64175 -31.51788 -29.77067 -26.34795 -24.36599 -23.71118 -23.58713 -20.95649 -19.40603 -19.27537 -18.30309 -17.85837 -16.86111 -16.56429 -16.41850 -15.88823 -15.52778 -15.49494 -14.76175 -14.46556 -14.19219 -14.04820 -13.81480 -13.53085 -13.45748 -13.36444 -13.27648 -12.95059 -12.60134 -12.22019 -12.19504 -12.10552 -11.80118 -11.66895 -11.45209 -11.31059 -11.16200 -11.03940 -10.83397 -10.74249 -10.70758 -10.28611 -10.25925 -9.92397 -9.88322 -9.48124 -9.35076 -9.02507 -8.15596 -6.93941 -4.50402 -0.19178 0.42196 1.27752 1.40120 2.59198 3.13172 3.24170 3.29802 3.35520 3.78483 3.87170 3.97162 4.13668 4.43228 4.50063 4.57511 4.72231 4.76120 4.97388 5.08556 5.23288 5.35553 5.36327 5.42096 5.47215 5.63030 5.73939 5.84449 5.87064 6.12859 6.15703 6.21684 6.30723 6.44432 6.57100 6.71401 6.84197 7.36629 7.59196 7.84304 8.55672 8.74983 10.05660 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.015635 B = 0.004175 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.415855 B = 6705.563544 C = 7339.423432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.148 4.148 3 C 0.125 3.875 4 N -0.819 5.819 5 C -0.237 4.237 6 H 0.100 0.900 7 C 0.097 3.903 8 N -0.784 5.784 9 Si 0.848 3.152 10 H -0.233 1.233 11 H -0.277 1.277 12 H -0.254 1.254 13 S 2.468 3.532 14 O -0.952 6.952 15 O -0.996 6.996 16 C -0.647 4.647 17 C 0.003 3.997 18 C -0.110 4.110 19 C -0.415 4.415 20 S 2.509 3.491 21 C -0.647 4.647 22 O -0.917 6.917 23 O -0.932 6.932 24 N -0.412 5.412 25 C 0.154 3.846 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.290 0.710 34 H 0.160 0.840 35 H 0.155 0.845 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.751 -6.042 8.715 10.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.187 4.187 3 C -0.001 4.001 4 N -0.639 5.639 5 C -0.393 4.393 6 H 0.117 0.883 7 C -0.125 4.125 8 N -0.418 5.418 9 Si 0.671 3.329 10 H -0.157 1.157 11 H -0.203 1.203 12 H -0.178 1.178 13 S 2.571 3.429 14 O -0.940 6.940 15 O -0.986 6.986 16 C -0.724 4.724 17 C -0.025 4.025 18 C -0.132 4.132 19 C -0.635 4.635 20 S 2.685 3.315 21 C -0.797 4.797 22 O -0.914 6.914 23 O -0.928 6.928 24 N -0.122 5.122 25 C -0.008 4.008 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.177 0.823 35 H 0.173 0.827 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -3.363 -6.288 9.617 11.973 hybrid contribution 1.278 1.064 -0.002 1.663 sum -2.085 -5.224 9.615 11.140 Atomic orbital electron populations 1.21713 0.95807 1.01401 1.01769 1.22031 0.95525 0.98571 1.02591 1.21452 0.79563 0.95804 1.03290 1.53405 1.10914 1.81352 1.18261 1.19115 1.11928 1.10088 0.98134 0.88259 1.25885 0.93624 1.00150 0.92835 1.69817 1.04615 1.37179 1.30191 0.87241 0.81053 0.83053 0.81519 1.15725 1.20348 1.17768 1.14474 0.75579 0.78019 0.74842 1.93437 1.35464 1.82290 1.82847 1.93348 1.65711 1.65666 1.73825 1.33762 1.00187 1.29273 1.09204 1.21542 0.96632 0.91030 0.93268 1.22071 0.97875 0.97681 0.95562 1.33182 0.97643 1.20003 1.12650 1.05335 0.75559 0.73590 0.77055 1.30181 1.14664 1.12964 1.21941 1.93591 1.29475 1.82402 1.85933 1.93613 1.70519 1.60310 1.68384 1.67783 1.22370 1.02044 1.19979 1.22699 0.96414 0.92113 0.89576 0.92702 0.92565 0.93002 0.90982 0.92766 0.89631 0.90570 0.89979 0.82285 0.82721 0.84638 0.84709 0.84938 0.80974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 54. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.16 0.37 -1.55 16 2 C -0.15 -2.36 6.18 -26.73 -0.17 -2.52 16 3 C 0.13 2.25 5.66 -4.04 -0.02 2.22 16 4 N -0.82 -17.69 2.17 -59.90 -0.13 -17.82 16 5 C -0.24 -5.55 9.55 -15.06 -0.14 -5.69 16 6 H 0.10 2.34 8.06 -52.49 -0.42 1.91 16 7 C 0.10 2.39 4.45 -17.43 -0.08 2.31 16 8 N -0.78 -19.68 13.97 55.49 0.78 -18.90 16 9 Si 0.85 20.04 25.35 -169.99 -4.31 15.73 16 10 H -0.23 -5.86 6.12 56.52 0.35 -5.52 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 H -0.25 -5.83 7.11 56.52 0.40 -5.42 16 13 S 2.47 56.03 4.48 -107.50 -0.48 55.54 16 14 O -0.95 -23.93 11.76 -57.17 -0.67 -24.60 16 15 O -1.00 -23.52 16.00 -57.17 -0.91 -24.44 16 16 C -0.65 -12.85 5.96 -39.44 -0.24 -13.09 16 17 C 0.00 0.05 9.65 -39.28 -0.38 -0.33 16 18 C -0.11 -1.72 9.51 -39.44 -0.38 -2.09 16 19 C -0.42 -6.48 6.53 -17.55 -0.11 -6.59 16 20 S 2.51 30.06 5.86 -107.50 -0.63 29.43 16 21 C -0.65 -4.50 10.80 101.05 1.09 -3.41 16 22 O -0.92 -14.09 17.73 -57.54 -1.02 -15.11 16 23 O -0.93 -12.99 17.10 -57.54 -0.98 -13.97 16 24 N -0.41 -7.24 10.05 -12.45 -0.13 -7.36 16 25 C 0.15 2.85 9.89 -17.55 -0.17 2.67 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.05 0.91 7.30 -51.93 -0.38 0.53 16 31 H 0.09 1.41 8.11 -51.93 -0.42 0.99 16 32 H 0.08 1.32 6.98 -51.93 -0.36 0.96 16 33 H 0.29 6.77 8.31 -40.82 -0.34 6.43 16 34 H 0.16 2.86 7.71 -52.49 -0.40 2.45 16 35 H 0.16 1.89 7.56 -52.49 -0.40 1.49 16 36 H 0.13 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.13 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.13 0.71 8.14 -51.92 -0.42 0.29 16 39 H 0.17 2.92 7.62 -52.48 -0.40 2.52 16 LS Contribution 351.55 15.07 5.30 5.30 Total: -1.00 -32.98 351.55 -8.36 -41.34 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -4.94 Total: 2.92 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: -0.23 Total: -28.06 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.52 Total: -44.08 kcal Atomic # 8 Polarization: -74.53 SS G_CDS: -3.59 Total: -78.12 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.31 Total: 15.73 kcal Atomic # 16 Polarization: 86.09 SS G_CDS: -1.11 Total: 84.98 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.98 -8.36 -41.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280348463.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.201 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.04 seconds