Wall clock time and date at job start Wed Apr 1 2020 06:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47010 * 2 1 4 4 N 1.46505 * 109.46862 * 175.32707 * 3 2 1 5 5 C 1.36931 * 120.00000 * 80.83065 * 4 3 2 6 6 H 1.07999 * 120.00099 * 309.30148 * 5 4 3 7 7 C 1.38813 * 120.00112 * 129.29983 * 5 4 3 8 8 N 1.31611 * 120.00259 * 154.12248 * 7 5 4 9 9 Si 1.86806 * 119.99721 * 334.12499 * 7 5 4 10 10 H 1.48501 * 109.47232 * 95.54769 * 9 7 5 11 11 H 1.48501 * 109.46767 * 215.54621 * 9 7 5 12 12 H 1.48493 * 109.47232 * 335.54678 * 9 7 5 13 13 S 1.65596 * 119.99716 * 260.82703 * 4 3 2 14 14 O 1.42097 * 106.40290 * 196.58318 * 13 4 3 15 15 O 1.42105 * 106.40419 * 329.50634 * 13 4 3 16 16 C 1.76204 * 107.21678 * 83.04471 * 13 4 3 17 17 C 1.38672 * 120.41937 * 89.99862 * 16 13 4 18 18 C 1.38624 * 118.41926 * 180.02562 * 17 16 13 19 19 C 1.38234 * 119.16278 * 359.97438 * 18 17 16 20 20 S 1.76203 * 119.61629 * 180.02562 * 19 18 17 21 21 C 1.81397 * 104.44820 * 90.00249 * 20 19 18 22 22 O 1.42096 * 104.27488 * 206.07109 * 20 19 18 23 23 O 1.42098 * 104.27977 * 333.93154 * 20 19 18 24 24 N 1.31847 * 120.76203 * 0.02562 * 19 18 17 25 25 C 1.31886 * 121.72538 * 359.70602 * 24 19 18 26 26 H 1.08999 * 109.47078 * 304.77618 * 1 2 3 27 27 H 1.09006 * 109.46899 * 64.77433 * 1 2 3 28 28 H 1.08997 * 109.47265 * 184.77454 * 1 2 3 29 29 H 1.09001 * 109.47270 * 240.00351 * 2 1 3 30 30 H 1.08993 * 109.47203 * 119.99827 * 2 1 3 31 31 H 1.08998 * 109.47075 * 295.32106 * 3 2 1 32 32 H 1.08995 * 109.46824 * 55.32530 * 3 2 1 33 33 H 0.97002 * 120.00224 * 180.02562 * 8 7 5 34 34 H 1.07998 * 120.78619 * 0.02562 * 17 16 13 35 35 H 1.07999 * 120.41950 * 179.97438 * 18 17 16 36 36 H 1.08997 * 109.47337 * 59.99391 * 21 20 19 37 37 H 1.08995 * 109.47383 * 179.97438 * 21 20 19 38 38 H 1.09000 * 109.47275 * 299.99681 * 21 20 19 39 39 H 1.08007 * 119.61657 * 180.30773 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5007 1.4441 0.1125 5 6 4.2731 1.2241 -0.9966 6 1 4.0789 0.3706 -1.6292 7 6 5.3056 2.0981 -1.3078 8 7 6.3362 1.6760 -2.0091 9 14 5.2322 3.8734 -0.7313 10 1 5.9877 4.0128 0.5396 11 1 5.8340 4.7545 -1.7641 12 1 3.8166 4.2643 -0.5110 13 16 4.2177 1.7119 1.5810 14 8 5.5741 2.0386 1.3117 15 8 3.3419 2.5648 2.3056 16 6 4.2375 0.1735 2.4400 17 6 5.3134 -0.6912 2.3068 18 6 5.2856 -1.8908 3.0010 19 6 4.1944 -2.1828 3.7977 20 16 4.1469 -3.7039 4.6859 21 6 4.9247 -3.3219 6.2795 22 8 2.7609 -3.9661 4.8577 23 8 4.9695 -4.5790 3.9265 24 7 3.1887 -1.3364 3.9006 25 6 3.1836 -0.1841 3.2590 26 1 -0.3633 0.5861 0.8441 27 1 -0.3633 0.4380 -0.9297 28 1 -0.3634 -1.0241 0.0855 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.7467 1.9316 -0.9289 32 1 1.6099 1.9799 0.8451 33 1 7.0579 2.2867 -2.2263 34 1 6.1530 -0.4361 1.6771 35 1 6.1061 -2.5883 2.9203 36 1 4.3572 -2.5390 6.7825 37 1 4.9380 -4.2171 6.9012 38 1 5.9461 -2.9799 6.1125 39 1 2.3441 0.4860 3.3719 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280348463.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:30:19 Heat of formation + Delta-G solvation = -116.210387 kcal Electronic energy + Delta-G solvation = -27520.755738 eV Core-core repulsion = 23489.848574 eV Total energy + Delta-G solvation = -4030.907164 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 19.37 seconds Orbital eigenvalues (eV) -41.30225 -38.27254 -38.12104 -38.09802 -37.11825 -36.65351 -34.91829 -33.90070 -33.17794 -32.89379 -30.39242 -27.85464 -25.77172 -25.22702 -25.06070 -22.30534 -21.09273 -20.48524 -19.90779 -19.11639 -18.37453 -18.11965 -17.58527 -17.35556 -17.21600 -16.60759 -16.16080 -16.04651 -15.63806 -15.41309 -15.20352 -15.10495 -14.92220 -14.43486 -14.15954 -14.02969 -14.02493 -13.74095 -13.58091 -13.26639 -13.15606 -13.11094 -12.88798 -12.80256 -12.75525 -12.41630 -12.34823 -12.19915 -12.10238 -12.03025 -11.76209 -11.52005 -11.35847 -10.94094 -10.84742 -10.77400 -9.85956 -8.77786 -6.35544 -1.16435 -0.90781 -0.37843 -0.13182 1.24867 1.34386 1.43597 1.58668 1.92147 2.18944 2.34557 2.72657 2.76855 2.85151 2.95077 3.31553 3.44580 3.68233 3.81522 3.97335 4.04960 4.06591 4.18129 4.21716 4.28083 4.41942 4.43139 4.56832 4.69445 4.82316 4.88989 5.03663 5.05601 5.16452 5.23286 5.37113 5.47062 5.69991 6.01791 6.21166 6.75831 6.99412 8.27266 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.015635 B = 0.004175 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.415855 B = 6705.563544 C = 7339.423432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.142 4.142 3 C 0.114 3.886 4 N -0.828 5.828 5 C -0.255 4.255 6 H 0.090 0.910 7 C 0.077 3.923 8 N -0.822 5.822 9 Si 0.855 3.145 10 H -0.259 1.259 11 H -0.259 1.259 12 H -0.246 1.246 13 S 2.502 3.498 14 O -0.979 6.979 15 O -1.007 7.007 16 C -0.672 4.672 17 C -0.007 4.007 18 C -0.108 4.108 19 C -0.411 4.411 20 S 2.512 3.488 21 C -0.614 4.614 22 O -0.954 6.954 23 O -0.953 6.953 24 N -0.420 5.420 25 C 0.151 3.849 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.041 0.959 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.292 0.708 34 H 0.156 0.844 35 H 0.191 0.809 36 H 0.150 0.850 37 H 0.171 0.829 38 H 0.159 0.841 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.238 -7.590 11.386 14.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.182 4.182 3 C -0.011 4.011 4 N -0.652 5.652 5 C -0.406 4.406 6 H 0.108 0.892 7 C -0.141 4.141 8 N -0.458 5.458 9 Si 0.678 3.322 10 H -0.184 1.184 11 H -0.184 1.184 12 H -0.169 1.169 13 S 2.606 3.394 14 O -0.968 6.968 15 O -0.997 6.997 16 C -0.753 4.753 17 C -0.035 4.035 18 C -0.129 4.129 19 C -0.627 4.627 20 S 2.689 3.311 21 C -0.769 4.769 22 O -0.951 6.951 23 O -0.950 6.950 24 N -0.130 5.130 25 C -0.010 4.010 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.174 0.826 35 H 0.208 0.792 36 H 0.168 0.832 37 H 0.189 0.811 38 H 0.177 0.823 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -3.883 -7.759 12.118 14.904 hybrid contribution 1.386 1.317 -0.409 1.955 sum -2.497 -6.442 11.709 13.596 Atomic orbital electron populations 1.21697 0.93178 1.02379 1.02995 1.21958 0.97744 0.96849 1.01606 1.21755 0.77719 0.97448 1.04205 1.53239 1.12232 1.82352 1.17334 1.18857 1.12300 1.09928 0.99508 0.89210 1.26128 0.93940 1.00936 0.93057 1.69829 1.05493 1.37603 1.32848 0.87112 0.81186 0.83190 0.80724 1.18430 1.18390 1.16915 1.12031 0.74660 0.77841 0.74897 1.93424 1.36716 1.83115 1.83518 1.93344 1.65979 1.66310 1.74045 1.33164 1.02281 1.28051 1.11853 1.21697 0.96112 0.92054 0.93594 1.22444 0.99072 0.97049 0.94307 1.34173 0.96378 1.20388 1.11767 1.05473 0.74972 0.71990 0.78710 1.29976 1.15226 1.15333 1.16353 1.93551 1.32372 1.82315 1.86904 1.93584 1.70367 1.60305 1.70719 1.67878 1.23231 1.01914 1.19956 1.22876 0.96119 0.92868 0.89162 0.91858 0.91082 0.92080 0.91728 0.94021 0.88385 0.89990 0.89777 0.82645 0.79166 0.83194 0.81078 0.82259 0.80045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 9.91 71.98 0.71 -2.77 16 2 C -0.14 -4.48 6.18 30.60 0.19 -4.29 16 3 C 0.11 4.07 5.66 86.38 0.49 4.56 16 4 N -0.83 -36.32 2.17 -343.44 -0.75 -37.06 16 5 C -0.25 -12.30 9.55 84.03 0.80 -11.49 16 6 H 0.09 4.42 8.06 -2.91 -0.02 4.40 16 7 C 0.08 3.95 4.45 84.86 0.38 4.32 16 8 N -0.82 -42.84 13.97 21.65 0.30 -42.54 16 9 Si 0.86 41.05 25.35 68.60 1.74 42.79 16 10 H -0.26 -13.43 6.12 99.48 0.61 -12.82 16 11 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 12 H -0.25 -11.29 7.11 99.48 0.71 -10.58 16 13 S 2.50 114.58 4.48 -56.49 -0.25 114.33 16 14 O -0.98 -50.34 11.76 -128.00 -1.51 -51.84 16 15 O -1.01 -47.39 16.00 -128.00 -2.05 -49.44 16 16 C -0.67 -26.47 5.96 22.36 0.13 -26.34 16 17 C -0.01 -0.25 9.65 22.47 0.22 -0.03 16 18 C -0.11 -3.13 9.51 22.36 0.21 -2.92 16 19 C -0.41 -11.83 6.53 84.69 0.55 -11.27 16 20 S 2.51 52.18 5.86 -56.49 -0.33 51.85 16 21 C -0.61 -4.95 10.80 113.37 1.22 -3.72 16 22 O -0.95 -27.30 17.73 -127.65 -2.26 -29.56 16 23 O -0.95 -23.82 17.10 -127.65 -2.18 -26.01 16 24 N -0.42 -14.01 10.05 -193.30 -1.94 -15.95 16 25 C 0.15 5.44 9.89 84.67 0.84 6.27 16 26 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.04 1.39 7.30 -2.39 -0.02 1.38 16 31 H 0.10 3.21 8.11 -2.39 -0.02 3.20 16 32 H 0.08 2.79 6.98 -2.39 -0.02 2.77 16 33 H 0.29 14.20 8.31 -92.71 -0.77 13.43 16 34 H 0.16 5.65 7.71 -2.91 -0.02 5.63 16 35 H 0.19 4.05 7.56 -2.91 -0.02 4.03 16 36 H 0.15 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.17 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.16 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.18 6.00 7.62 -2.91 -0.02 5.98 16 Total: -1.00 -73.68 351.55 -2.51 -76.19 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.97 Total: 14.94 kcal Atomic # 6 Polarization: -53.44 SS G_CDS: 5.75 Total: -47.69 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -2.39 Total: -95.55 kcal Atomic # 8 Polarization: -148.85 SS G_CDS: -8.00 Total: -156.85 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 1.74 Total: 42.79 kcal Atomic # 16 Polarization: 166.76 SS G_CDS: -0.58 Total: 166.18 kcal Total: -73.68 -2.51 -76.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280348463.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.019 kcal (2) G-P(sol) polarization free energy of solvation -73.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 19.37 seconds