Wall clock time and date at job start Wed Apr 1 2020 06:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.46764 * 2 1 4 4 C 1.36936 * 120.00277 * 273.05493 * 3 2 1 5 5 H 1.08001 * 120.00079 * 186.86189 * 4 3 2 6 6 C 1.38817 * 119.99647 * 6.85922 * 4 3 2 7 7 N 1.31618 * 120.00167 * 9.52873 * 6 4 3 8 8 Si 1.86804 * 119.99702 * 189.52580 * 6 4 3 9 9 H 1.48505 * 109.46788 * 60.00193 * 8 6 4 10 10 H 1.48502 * 109.46872 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47211 * 300.00260 * 8 6 4 12 12 S 1.65604 * 119.99782 * 92.78413 * 3 2 1 13 13 O 1.42103 * 106.40171 * 198.54928 * 12 3 2 14 14 O 1.42099 * 106.40123 * 331.46990 * 12 3 2 15 15 C 1.76197 * 107.21714 * 85.01190 * 12 3 2 16 16 C 1.38258 * 120.00403 * 13.08241 * 15 12 3 17 17 C 1.38216 * 120.00355 * 179.74664 * 16 15 12 18 18 C 1.38252 * 119.99507 * 0.54777 * 17 16 15 19 19 C 1.38214 * 120.00467 * 359.70579 * 18 17 16 20 20 C 1.38214 * 119.99797 * 193.35573 * 15 12 3 21 21 S 1.76195 * 120.00222 * 0.02562 * 20 15 12 22 22 O 1.42100 * 106.40411 * 181.46833 * 21 20 15 23 23 O 1.42104 * 106.40169 * 314.39212 * 21 20 15 24 24 N 1.65602 * 107.22034 * 67.92937 * 21 20 15 25 25 C 1.46501 * 119.99734 * 61.07965 * 24 21 20 26 26 H 1.08997 * 109.47093 * 299.99593 * 1 2 3 27 27 H 1.08998 * 109.47247 * 59.99628 * 1 2 3 28 28 H 1.09007 * 109.47195 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47093 * 240.00407 * 2 1 3 30 30 H 1.08998 * 109.47247 * 120.00372 * 2 1 3 31 31 H 0.96992 * 119.99810 * 179.97438 * 7 6 4 32 32 H 1.08001 * 119.99771 * 359.97438 * 16 15 12 33 33 H 1.08001 * 120.00086 * 180.27582 * 17 16 15 34 34 H 1.08008 * 119.99696 * 179.72309 * 18 17 16 35 35 H 1.07994 * 120.00267 * 179.97438 * 19 18 17 36 36 H 0.96997 * 120.00064 * 241.08729 * 24 21 20 37 37 H 1.09003 * 109.47121 * 184.98486 * 25 24 21 38 38 H 1.08990 * 109.47638 * 304.98914 * 25 24 21 39 39 H 1.09007 * 109.46809 * 64.99432 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1869 2.0479 -1.1842 5 1 2.6499 3.0236 -1.1934 6 6 1.7627 1.4696 -2.3727 7 7 1.0341 0.3737 -2.3481 8 14 2.2258 2.2468 -4.0070 9 1 3.7048 2.2860 -4.1349 10 1 1.6546 1.4426 -5.1171 11 1 1.6868 3.6291 -4.0682 12 16 2.3599 2.1387 1.4325 13 8 2.3777 3.5323 1.1553 14 8 1.5113 1.5513 2.4093 15 6 4.0075 1.6984 1.8753 16 6 4.8340 1.0917 0.9477 17 6 6.1282 0.7511 1.2935 18 6 6.5925 1.0068 2.5703 19 6 5.7647 1.6085 3.4993 20 6 4.4719 1.9544 3.1517 21 16 3.4162 2.7204 4.3362 22 8 4.1870 2.8757 5.5198 23 8 2.7873 3.8067 3.6701 24 7 2.2174 1.6366 4.6978 25 6 2.5563 0.3399 5.2893 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 0.7374 -0.0301 -3.1785 32 1 4.4696 0.8873 -0.0482 33 1 6.7752 0.2813 0.5675 34 1 7.6024 0.7366 2.8419 35 1 6.1273 1.8079 4.4968 36 1 1.2909 1.8603 4.5179 37 1 1.6552 -0.2676 5.3738 38 1 3.2805 -0.1708 4.6547 39 1 2.9853 0.4932 6.2796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282114562.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:51:18 Heat of formation + Delta-G solvation = -66.263713 kcal Electronic energy + Delta-G solvation = -28781.370981 eV Core-core repulsion = 24752.629667 eV Total energy + Delta-G solvation = -4028.741314 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 3.41 seconds Orbital eigenvalues (eV) -38.98432 -37.16011 -36.34016 -36.20530 -35.71053 -34.88302 -34.46978 -31.57961 -31.31542 -31.04249 -29.34309 -25.77477 -24.60183 -23.35601 -23.04001 -21.69104 -19.57822 -18.72927 -18.35081 -17.57361 -17.02933 -16.64540 -16.37345 -15.98723 -15.12555 -14.95986 -14.61125 -14.46489 -14.29619 -14.13728 -13.67047 -13.53692 -12.87956 -12.83381 -12.68497 -12.56885 -12.34033 -11.94944 -11.88362 -11.82451 -11.66485 -11.39578 -11.23460 -11.10583 -11.05624 -10.90452 -10.84429 -10.62011 -10.40941 -10.11755 -10.04643 -9.82763 -9.42191 -9.21853 -9.13361 -9.11510 -8.11527 -6.27783 -3.95349 0.46816 0.73348 1.17897 1.28572 3.09604 3.15170 3.19279 3.22993 3.44294 3.80743 3.85218 4.23101 4.45371 4.52077 4.86334 4.90005 4.98442 5.12628 5.22301 5.42076 5.57357 5.67437 5.72026 5.79969 5.83111 5.96827 6.04678 6.08525 6.15113 6.29616 6.55141 6.77663 6.85746 6.92017 7.11359 7.32057 7.40672 7.67159 7.87776 8.38953 8.75219 9.14882 10.58282 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.016128 B = 0.005237 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.674895 B = 5345.706149 C = 5894.627500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.137 3.863 3 N -0.826 5.826 4 C -0.298 4.298 5 H 0.112 0.888 6 C 0.037 3.963 7 N -0.862 5.862 8 Si 0.920 3.080 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.271 1.271 12 S 2.595 3.405 13 O -0.930 6.930 14 O -0.970 6.970 15 C -0.571 4.571 16 C -0.050 4.050 17 C -0.086 4.086 18 C -0.111 4.111 19 C -0.046 4.046 20 C -0.600 4.600 21 S 2.662 3.338 22 O -0.960 6.960 23 O -0.939 6.939 24 N -1.089 6.089 25 C 0.092 3.908 26 H 0.027 0.973 27 H 0.093 0.907 28 H 0.034 0.966 29 H 0.111 0.889 30 H 0.025 0.975 31 H 0.267 0.733 32 H 0.153 0.847 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.144 0.856 36 H 0.432 0.568 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.358 -5.367 7.864 11.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.012 3.988 3 N -0.660 5.660 4 C -0.433 4.433 5 H 0.130 0.870 6 C -0.169 4.169 7 N -0.504 5.504 8 Si 0.746 3.254 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.196 1.196 12 S 2.681 3.319 13 O -0.919 6.919 14 O -0.960 6.960 15 C -0.648 4.648 16 C -0.069 4.069 17 C -0.104 4.104 18 C -0.130 4.130 19 C -0.065 4.065 20 C -0.687 4.687 21 S 2.749 3.251 22 O -0.950 6.950 23 O -0.929 6.929 24 N -0.854 5.854 25 C -0.055 4.055 26 H 0.046 0.954 27 H 0.111 0.889 28 H 0.053 0.947 29 H 0.129 0.871 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.170 0.830 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.162 0.838 36 H 0.272 0.728 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.123 -4.190 8.752 11.474 hybrid contribution 1.043 -0.696 -1.586 2.022 sum 7.166 -4.886 7.166 11.250 Atomic orbital electron populations 1.22143 0.96209 0.99585 1.02027 1.21281 0.95291 0.82009 1.00267 1.53698 1.68804 1.23298 1.20159 1.19624 1.39055 1.00943 0.83639 0.87015 1.25177 0.96030 0.96638 0.99006 1.70187 1.32722 1.20318 1.27170 0.86104 0.78988 0.79331 0.80987 1.19908 1.20767 1.19605 1.06723 0.75818 0.75195 0.74180 1.93552 1.85914 1.28910 1.83514 1.93455 1.64129 1.79356 1.59018 1.32562 1.29634 1.04095 0.98513 1.21272 0.93210 0.93134 0.99314 1.21622 0.95869 0.96586 0.96349 1.21416 0.99736 0.98084 0.93758 1.21040 0.91742 0.93747 1.00011 1.30697 1.11141 1.15769 1.11100 1.02942 0.73689 0.73854 0.74592 1.93554 1.71225 1.85143 1.45083 1.93779 1.74616 1.49644 1.74818 1.55028 1.22421 1.30547 1.77378 1.21371 1.02419 0.84535 0.97166 0.95395 0.88867 0.94736 0.87118 0.95669 0.92171 0.82983 0.84832 0.84938 0.83827 0.72841 0.89677 0.92738 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 74. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.55 37.16 0.35 -2.65 16 2 C 0.14 2.94 5.26 -4.04 -0.02 2.92 16 3 N -0.83 -19.10 1.95 -59.91 -0.12 -19.22 16 4 C -0.30 -7.29 9.21 -15.06 -0.14 -7.43 16 5 H 0.11 2.78 7.18 -52.49 -0.38 2.40 16 6 C 0.04 0.87 5.29 -17.43 -0.09 0.78 16 7 N -0.86 -20.16 7.39 55.49 0.41 -19.75 16 8 Si 0.92 18.77 29.56 -169.99 -5.03 13.74 16 9 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 10 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 11 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 12 S 2.60 59.29 3.94 -107.50 -0.42 58.86 16 13 O -0.93 -24.71 15.17 -65.84 -1.00 -25.71 16 14 O -0.97 -20.83 12.43 -60.85 -0.76 -21.59 16 15 C -0.57 -11.30 5.82 -39.58 -0.23 -11.53 16 16 C -0.05 -0.87 9.57 -39.58 -0.38 -1.25 16 17 C -0.09 -1.19 10.05 -39.58 -0.40 -1.59 16 18 C -0.11 -1.43 10.05 -39.58 -0.40 -1.83 16 19 C -0.05 -0.68 9.55 -39.58 -0.38 -1.06 16 20 C -0.60 -10.90 5.67 -39.58 -0.22 -11.12 16 21 S 2.66 49.03 4.91 -107.50 -0.53 48.50 16 22 O -0.96 -17.46 16.81 -57.17 -0.96 -18.42 16 23 O -0.94 -20.89 14.80 -67.29 -1.00 -21.89 16 24 N -1.09 -17.07 4.20 -16.63 -0.07 -17.14 16 25 C 0.09 1.11 11.13 59.85 0.67 1.78 16 26 H 0.03 0.59 7.75 -51.93 -0.40 0.18 16 27 H 0.09 2.19 6.06 -51.93 -0.31 1.88 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.11 2.46 5.83 -51.93 -0.30 2.15 16 30 H 0.03 0.49 7.82 -51.93 -0.41 0.08 16 31 H 0.27 5.97 8.31 -40.82 -0.34 5.63 16 32 H 0.15 2.65 7.04 -52.49 -0.37 2.29 16 33 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 35 H 0.14 1.81 7.33 -52.49 -0.38 1.43 16 36 H 0.43 6.68 7.63 -34.47 -0.26 6.42 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.05 0.63 7.99 -51.93 -0.41 0.21 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 337.12 15.07 5.08 5.08 Total: -1.00 -30.79 337.12 -10.11 -40.89 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -4.48 Total: 9.62 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: -1.24 Total: -32.99 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: 0.22 Total: -56.11 kcal Atomic # 8 Polarization: -83.89 SS G_CDS: -3.71 Total: -87.60 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Atomic # 16 Polarization: 108.32 SS G_CDS: -0.95 Total: 107.36 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.79 -10.11 -40.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282114562.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.370 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.41 seconds