Wall clock time and date at job start Wed Apr 1 2020 06:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.46764 * 2 1 4 4 C 1.36936 * 120.00277 * 273.05493 * 3 2 1 5 5 H 1.08001 * 120.00079 * 186.86189 * 4 3 2 6 6 C 1.38817 * 119.99647 * 6.85922 * 4 3 2 7 7 N 1.31618 * 120.00167 * 9.52873 * 6 4 3 8 8 Si 1.86804 * 119.99702 * 189.52580 * 6 4 3 9 9 H 1.48505 * 109.46788 * 60.00193 * 8 6 4 10 10 H 1.48502 * 109.46872 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47211 * 300.00260 * 8 6 4 12 12 S 1.65604 * 119.99782 * 92.78413 * 3 2 1 13 13 O 1.42103 * 106.40171 * 198.54928 * 12 3 2 14 14 O 1.42099 * 106.40123 * 331.46990 * 12 3 2 15 15 C 1.76197 * 107.21714 * 85.01190 * 12 3 2 16 16 C 1.38258 * 120.00403 * 13.08241 * 15 12 3 17 17 C 1.38216 * 120.00355 * 179.74664 * 16 15 12 18 18 C 1.38252 * 119.99507 * 0.54777 * 17 16 15 19 19 C 1.38214 * 120.00467 * 359.70579 * 18 17 16 20 20 C 1.38214 * 119.99797 * 193.35573 * 15 12 3 21 21 S 1.76195 * 120.00222 * 0.02562 * 20 15 12 22 22 O 1.42100 * 106.40411 * 181.46833 * 21 20 15 23 23 O 1.42104 * 106.40169 * 314.39212 * 21 20 15 24 24 N 1.65602 * 107.22034 * 67.92937 * 21 20 15 25 25 C 1.46501 * 119.99734 * 61.07965 * 24 21 20 26 26 H 1.08997 * 109.47093 * 299.99593 * 1 2 3 27 27 H 1.08998 * 109.47247 * 59.99628 * 1 2 3 28 28 H 1.09007 * 109.47195 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47093 * 240.00407 * 2 1 3 30 30 H 1.08998 * 109.47247 * 120.00372 * 2 1 3 31 31 H 0.96992 * 119.99810 * 179.97438 * 7 6 4 32 32 H 1.08001 * 119.99771 * 359.97438 * 16 15 12 33 33 H 1.08001 * 120.00086 * 180.27582 * 17 16 15 34 34 H 1.08008 * 119.99696 * 179.72309 * 18 17 16 35 35 H 1.07994 * 120.00267 * 179.97438 * 19 18 17 36 36 H 0.96997 * 120.00064 * 241.08729 * 24 21 20 37 37 H 1.09003 * 109.47121 * 184.98486 * 25 24 21 38 38 H 1.08990 * 109.47638 * 304.98914 * 25 24 21 39 39 H 1.09007 * 109.46809 * 64.99432 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1869 2.0479 -1.1842 5 1 2.6499 3.0236 -1.1934 6 6 1.7627 1.4696 -2.3727 7 7 1.0341 0.3737 -2.3481 8 14 2.2258 2.2468 -4.0070 9 1 3.7048 2.2860 -4.1349 10 1 1.6546 1.4426 -5.1171 11 1 1.6868 3.6291 -4.0682 12 16 2.3599 2.1387 1.4325 13 8 2.3777 3.5323 1.1553 14 8 1.5113 1.5513 2.4093 15 6 4.0075 1.6984 1.8753 16 6 4.8340 1.0917 0.9477 17 6 6.1282 0.7511 1.2935 18 6 6.5925 1.0068 2.5703 19 6 5.7647 1.6085 3.4993 20 6 4.4719 1.9544 3.1517 21 16 3.4162 2.7204 4.3362 22 8 4.1870 2.8757 5.5198 23 8 2.7873 3.8067 3.6701 24 7 2.2174 1.6366 4.6978 25 6 2.5563 0.3399 5.2893 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 0.7374 -0.0301 -3.1785 32 1 4.4696 0.8873 -0.0482 33 1 6.7752 0.2813 0.5675 34 1 7.6024 0.7366 2.8419 35 1 6.1273 1.8079 4.4968 36 1 1.2909 1.8603 4.5179 37 1 1.6552 -0.2676 5.3738 38 1 3.2805 -0.1708 4.6547 39 1 2.9853 0.4932 6.2796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282114562.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:51:15 Heat of formation + Delta-G solvation = -88.781338 kcal Electronic energy + Delta-G solvation = -28782.347419 eV Core-core repulsion = 24752.629667 eV Total energy + Delta-G solvation = -4029.717751 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -40.23638 -38.67423 -38.10239 -37.98845 -37.21156 -36.69633 -35.76136 -33.25818 -32.59452 -32.35951 -31.05987 -26.82282 -26.35645 -24.67919 -24.33005 -23.41294 -21.02751 -20.34455 -19.83817 -19.03987 -18.59348 -18.32201 -17.85823 -17.42653 -16.61742 -16.25153 -16.17245 -16.10337 -15.67479 -15.47570 -15.25020 -14.71240 -14.57066 -14.17569 -14.05389 -13.87465 -13.79970 -13.46847 -13.39473 -13.36462 -13.12821 -13.01090 -12.95091 -12.84902 -12.62078 -12.51715 -12.49575 -12.17707 -12.05586 -11.79772 -11.67890 -11.51476 -10.86780 -10.64659 -10.42217 -10.39010 -9.85314 -7.98577 -5.79007 -0.90155 -0.61487 -0.44291 -0.05668 1.50131 1.52785 1.59120 1.79059 2.12746 2.19905 2.45085 2.54267 2.78554 3.05996 3.15746 3.67006 3.84270 3.88170 4.09075 4.18676 4.26152 4.38587 4.45874 4.64769 4.68065 4.75057 4.85853 4.90362 4.99994 5.05024 5.05551 5.13858 5.16351 5.38157 5.56112 5.68662 5.95350 6.11622 6.16808 6.64411 7.00470 7.39939 8.87676 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.016128 B = 0.005237 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.674895 B = 5345.706149 C = 5894.627500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.142 3.858 3 N -0.849 5.849 4 C -0.338 4.338 5 H 0.092 0.908 6 C 0.007 3.993 7 N -0.884 5.884 8 Si 0.970 3.030 9 H -0.266 1.266 10 H -0.276 1.276 11 H -0.283 1.283 12 S 2.629 3.371 13 O -0.978 6.978 14 O -0.968 6.968 15 C -0.598 4.598 16 C -0.061 4.061 17 C -0.077 4.077 18 C -0.086 4.086 19 C -0.045 4.045 20 C -0.615 4.615 21 S 2.663 3.337 22 O -0.961 6.961 23 O -0.988 6.988 24 N -1.089 6.089 25 C 0.077 3.923 26 H 0.020 0.980 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.106 0.894 30 H 0.045 0.955 31 H 0.266 0.734 32 H 0.145 0.855 33 H 0.177 0.823 34 H 0.189 0.811 35 H 0.171 0.829 36 H 0.431 0.569 37 H 0.106 0.894 38 H 0.061 0.939 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.548 -7.397 9.302 15.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.017 3.983 3 N -0.684 5.684 4 C -0.468 4.468 5 H 0.110 0.890 6 C -0.196 4.196 7 N -0.526 5.526 8 Si 0.795 3.205 9 H -0.190 1.190 10 H -0.201 1.201 11 H -0.209 1.209 12 S 2.719 3.281 13 O -0.968 6.968 14 O -0.958 6.958 15 C -0.683 4.683 16 C -0.081 4.081 17 C -0.095 4.095 18 C -0.104 4.104 19 C -0.065 4.065 20 C -0.703 4.703 21 S 2.752 3.248 22 O -0.951 6.951 23 O -0.978 6.978 24 N -0.855 5.855 25 C -0.068 4.068 26 H 0.039 0.961 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.123 0.877 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.163 0.837 33 H 0.195 0.805 34 H 0.206 0.794 35 H 0.189 0.811 36 H 0.270 0.730 37 H 0.125 0.875 38 H 0.080 0.920 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.221 -6.220 10.102 15.026 hybrid contribution 0.256 -0.107 -1.668 1.691 sum 9.477 -6.327 8.435 14.177 Atomic orbital electron populations 1.22134 0.96704 1.00524 1.00388 1.21300 0.94971 0.81205 1.00829 1.53146 1.73270 1.23180 1.18819 1.19439 1.41104 1.01879 0.84428 0.88985 1.25658 0.95846 0.97283 1.00787 1.70264 1.33998 1.20977 1.27320 0.85355 0.78998 0.77847 0.78278 1.19043 1.20081 1.20917 1.04012 0.76262 0.73832 0.73991 1.93511 1.87121 1.31747 1.84423 1.93463 1.64549 1.78907 1.58882 1.31439 1.27337 1.08878 1.00654 1.21448 0.94945 0.93074 0.98586 1.22119 0.94349 0.95155 0.97879 1.22087 1.01456 0.94617 0.92269 1.21532 0.90314 0.92759 1.01884 1.30578 1.12915 1.16888 1.09949 1.02658 0.73927 0.73772 0.74490 1.93539 1.71319 1.85415 1.44791 1.93722 1.75753 1.52521 1.75801 1.54948 1.21586 1.31675 1.77315 1.21763 1.03969 0.83071 0.98045 0.96134 0.91247 0.92549 0.87667 0.93672 0.92324 0.83712 0.80538 0.79429 0.81135 0.72966 0.87508 0.92004 0.90268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 54. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.05 9.55 71.98 0.69 -5.37 16 2 C 0.14 6.20 5.26 86.38 0.45 6.66 16 3 N -0.85 -40.69 1.95 -343.45 -0.67 -41.36 16 4 C -0.34 -17.41 9.21 84.03 0.77 -16.63 16 5 H 0.09 4.93 7.18 -2.91 -0.02 4.91 16 6 C 0.01 0.32 5.29 84.86 0.45 0.77 16 7 N -0.88 -42.74 7.39 21.65 0.16 -42.58 16 8 Si 0.97 39.73 29.56 68.60 2.03 41.76 16 9 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 10 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 11 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 12 S 2.63 123.46 3.94 -56.49 -0.22 123.24 16 13 O -0.98 -54.71 15.17 -119.72 -1.82 -56.53 16 14 O -0.97 -42.27 12.43 -124.48 -1.55 -43.81 16 15 C -0.60 -23.18 5.82 22.27 0.13 -23.05 16 16 C -0.06 -2.01 9.57 22.27 0.21 -1.80 16 17 C -0.08 -1.74 10.05 22.27 0.22 -1.52 16 18 C -0.09 -1.67 10.05 22.27 0.22 -1.45 16 19 C -0.05 -1.14 9.55 22.27 0.21 -0.93 16 20 C -0.61 -21.10 5.67 22.27 0.13 -20.98 16 21 S 2.66 96.35 4.91 -56.49 -0.28 96.08 16 22 O -0.96 -33.28 16.81 -128.00 -2.15 -35.43 16 23 O -0.99 -45.30 14.80 -118.32 -1.75 -47.05 16 24 N -1.09 -33.14 4.20 -206.53 -0.87 -34.01 16 25 C 0.08 1.66 11.13 127.77 1.42 3.09 16 26 H 0.02 0.87 7.75 -2.39 -0.02 0.86 16 27 H 0.07 3.40 6.06 -2.39 -0.01 3.38 16 28 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 29 H 0.11 4.77 5.83 -2.39 -0.01 4.76 16 30 H 0.05 1.73 7.82 -2.39 -0.02 1.71 16 31 H 0.27 12.25 8.31 -92.71 -0.77 11.48 16 32 H 0.15 5.01 7.04 -2.91 -0.02 4.99 16 33 H 0.18 2.54 8.06 -2.91 -0.02 2.52 16 34 H 0.19 1.72 8.06 -2.91 -0.02 1.69 16 35 H 0.17 3.41 7.33 -2.91 -0.02 3.38 16 36 H 0.43 13.33 7.63 -96.75 -0.74 12.59 16 37 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.06 1.24 7.99 -2.39 -0.02 1.23 16 39 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -71.40 337.12 -1.84 -73.24 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: 0.36 Total: 27.67 kcal Atomic # 6 Polarization: -66.12 SS G_CDS: 4.92 Total: -61.21 kcal Atomic # 7 Polarization: -116.58 SS G_CDS: -1.38 Total: -117.96 kcal Atomic # 8 Polarization: -175.56 SS G_CDS: -7.27 Total: -182.83 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Atomic # 16 Polarization: 219.82 SS G_CDS: -0.50 Total: 219.32 kcal Total: -71.40 -1.84 -73.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282114562.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.540 kcal (2) G-P(sol) polarization free energy of solvation -71.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds