Wall clock time and date at job start Wed Apr 1 2020 05:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39648 * 120.14903 * 152.39806 * 3 2 1 5 5 C 1.37926 * 119.84654 * 180.02562 * 4 3 2 6 6 S 1.76199 * 119.92634 * 179.97438 * 5 4 3 7 7 O 1.42106 * 106.40138 * 23.55660 * 6 5 4 8 8 O 1.42093 * 106.40566 * 156.48032 * 6 5 4 9 9 N 1.65601 * 107.21913 * 270.02410 * 6 5 4 10 10 C 1.46502 * 120.00232 * 64.99330 * 9 6 5 11 11 C 1.53000 * 109.47147 * 164.99953 * 10 9 6 12 12 C 1.50701 * 109.47056 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00097 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99821 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00057 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99838 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46799 * 60.00264 * 16 14 12 18 18 H 1.48499 * 109.47073 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47180 * 300.00697 * 16 14 12 20 20 C 1.38387 * 120.15098 * 0.02562 * 5 4 3 21 21 C 1.38338 * 120.30572 * 0.23762 * 20 5 4 22 22 C 1.37970 * 120.15004 * 359.47927 * 21 20 5 23 23 C 1.50699 * 120.08035 * 180.25842 * 22 21 20 24 24 F 1.39903 * 109.46663 * 0.28058 * 23 22 21 25 25 F 1.39898 * 109.47289 * 120.28134 * 23 22 21 26 26 F 1.39898 * 109.47279 * 240.28412 * 23 22 21 27 27 H 1.08006 * 120.07807 * 0.03581 * 4 3 2 28 28 H 0.96998 * 120.00415 * 245.00117 * 9 6 5 29 29 H 1.09001 * 109.47509 * 285.00530 * 10 9 6 30 30 H 1.08999 * 109.46913 * 45.00549 * 10 9 6 31 31 H 1.08997 * 109.47299 * 300.00168 * 11 10 9 32 32 H 1.09004 * 109.47100 * 60.00764 * 11 10 9 33 33 H 0.96998 * 119.99457 * 179.97438 * 15 14 12 34 34 H 1.08002 * 119.84428 * 179.97438 * 20 5 4 35 35 H 1.08000 * 119.92773 * 179.72462 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2690 1.0711 -0.5595 5 6 4.6482 1.0650 -0.5566 6 16 5.5347 2.4142 -1.2626 7 8 4.6567 3.5312 -1.2318 8 8 6.8168 2.4164 -0.6501 9 7 5.7805 2.0567 -2.8607 10 6 4.6377 1.9456 -3.7707 11 6 5.1325 1.9849 -5.2180 12 6 3.9569 1.8712 -6.1540 13 1 2.9568 1.7805 -5.7564 14 6 4.1580 1.8841 -7.5180 15 7 5.3757 1.9951 -8.0021 16 14 2.7007 1.7439 -8.6783 17 1 1.7694 2.8763 -8.4422 18 1 3.1809 1.7819 -10.0829 19 1 1.9933 0.4617 -8.4319 20 6 5.3375 0.0011 -0.0014 21 6 4.6495 -1.0650 0.5496 22 6 3.2698 -1.0692 0.5587 23 6 2.5220 -2.2288 1.1647 24 9 3.4358 -3.1678 1.6550 25 9 1.7182 -1.7686 2.2132 26 9 1.7178 -2.8265 0.1883 27 1 2.7323 1.9019 -0.9933 28 1 6.6810 1.9207 -3.1944 29 1 4.1190 1.0042 -3.5894 30 1 3.9537 2.7764 -3.5980 31 1 5.6511 2.9262 -5.3992 32 1 5.8165 1.1540 -5.3908 33 1 5.5171 2.0037 -8.9617 34 1 6.4175 0.0013 -0.0022 35 1 5.1935 -1.8942 0.9773 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282369266.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:07 Heat of formation + Delta-G solvation = -169.549213 kcal Electronic energy + Delta-G solvation = -27710.331175 eV Core-core repulsion = 22999.810374 eV Total energy + Delta-G solvation = -4710.520801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.054 amu Computer time = 11.45 seconds Orbital eigenvalues (eV) -50.68890 -48.20528 -48.12451 -40.27244 -37.34605 -36.89498 -35.93515 -35.59376 -33.08046 -32.83809 -32.16625 -29.27972 -27.12413 -24.74826 -24.56621 -23.10161 -21.34003 -20.66371 -19.34793 -18.99823 -18.98217 -18.49553 -17.50701 -17.00743 -16.57628 -16.28440 -15.54706 -15.27950 -15.15464 -14.98552 -14.63096 -14.60021 -14.46943 -14.41560 -14.26351 -14.19727 -14.16736 -13.90628 -13.69240 -13.27624 -13.12530 -12.69627 -12.49663 -12.36212 -12.17579 -12.04934 -11.94757 -11.40843 -11.34474 -11.14510 -10.70826 -10.59154 -10.34223 -9.75251 -9.69565 -9.37723 -9.14419 -8.48404 -6.15239 -4.19278 -0.41483 0.20254 0.32212 1.97422 2.10220 2.15091 2.90995 3.01371 3.07017 3.19594 3.26629 3.31670 3.34277 3.36839 3.62587 3.83352 3.98242 4.23410 4.35613 4.38343 4.57882 4.72623 5.02666 5.05267 5.22032 5.22939 5.32646 5.54409 5.82499 6.00927 6.27718 6.56349 6.94839 7.18461 7.45439 7.53781 7.82011 8.18621 8.86161 9.46180 10.95935 Molecular weight = 348.05amu Principal moments of inertia in cm(-1) A = 0.010487 B = 0.003343 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.260217 B = 8374.827717 C = 9869.417318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C 0.232 3.768 3 C 0.007 3.993 4 C 0.029 3.971 5 C -0.649 4.649 6 S 2.690 3.310 7 O -0.947 6.947 8 O -0.958 6.958 9 N -1.104 6.104 10 C 0.113 3.887 11 C 0.019 3.981 12 C -0.528 4.528 13 H 0.059 0.941 14 C 0.062 3.938 15 N -0.892 5.892 16 Si 0.895 3.105 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.276 1.276 20 C 0.010 3.990 21 C -0.090 4.090 22 C -0.096 4.096 23 C 0.503 3.497 24 F -0.168 7.168 25 F -0.169 7.169 26 F -0.166 7.166 27 H 0.166 0.834 28 H 0.421 0.579 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.028 0.972 32 H 0.025 0.975 33 H 0.264 0.736 34 H 0.164 0.836 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.063 -7.406 19.374 20.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.043 5.043 2 C -0.085 4.085 3 C 0.003 3.997 4 C 0.008 3.992 5 C -0.731 4.731 6 S 2.775 3.225 7 O -0.936 6.936 8 O -0.948 6.948 9 N -0.868 5.868 10 C -0.011 4.011 11 C -0.020 4.020 12 C -0.567 4.567 13 H 0.077 0.923 14 C -0.141 4.141 15 N -0.530 5.530 16 Si 0.722 3.278 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.009 4.009 21 C -0.109 4.109 22 C -0.101 4.101 23 C 0.449 3.551 24 F -0.149 7.149 25 F -0.150 7.150 26 F -0.148 7.148 27 H 0.184 0.816 28 H 0.256 0.744 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.181 0.819 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.587 -6.687 19.752 20.861 hybrid contribution -0.480 -1.163 -0.789 1.485 sum -1.067 -7.850 18.963 20.552 Atomic orbital electron populations 1.81276 1.11296 1.05494 1.06265 1.25302 0.92299 0.95565 0.95307 1.15574 0.85043 0.96061 1.03001 1.21086 0.92258 0.95626 0.90259 1.31705 1.05868 1.20847 1.14701 1.02236 0.73452 0.73808 0.72955 1.93624 1.67527 1.46167 1.86316 1.93593 1.38738 1.86613 1.75848 1.55489 1.17056 1.89134 1.25072 1.21771 0.85939 1.00304 0.93133 1.19279 0.97338 0.98408 0.86986 1.21023 0.93134 1.51528 0.90977 0.92303 1.24978 0.95825 0.94884 0.98392 1.69935 1.20200 1.49634 1.13228 0.86609 0.82581 0.78802 0.79761 1.20051 1.21202 1.20159 1.21248 1.01557 0.89327 0.88787 1.21154 0.91345 0.99893 0.98517 1.20315 0.95466 0.93597 1.00673 1.18219 0.77765 0.82465 0.76698 1.93207 1.66300 1.67114 1.88271 1.93268 1.74477 1.88611 1.58645 1.93287 1.74369 1.84862 1.62248 0.81610 0.74355 0.92747 0.90995 0.95407 0.95649 0.92686 0.81860 0.82179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -5.18 18.54 41.84 0.78 -4.41 16 2 C 0.23 2.82 13.19 -22.47 -0.30 2.52 16 3 C 0.01 0.08 5.71 -106.93 -0.61 -0.53 16 4 C 0.03 0.29 9.23 -39.17 -0.36 -0.07 16 5 C -0.65 -6.35 5.94 -39.64 -0.24 -6.59 16 6 S 2.69 32.57 5.74 -107.50 -0.62 31.96 16 7 O -0.95 -14.22 16.74 -57.17 -0.96 -15.18 16 8 O -0.96 -12.68 17.27 -57.17 -0.99 -13.67 16 9 N -1.10 -14.73 6.00 -10.61 -0.06 -14.79 16 10 C 0.11 1.90 6.16 -4.04 -0.02 1.88 16 11 C 0.02 0.42 5.11 -27.88 -0.14 0.28 16 12 C -0.53 -13.56 9.11 -34.44 -0.31 -13.88 16 13 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -25.03 13.29 55.43 0.74 -24.29 16 16 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 C 0.01 0.08 9.52 -39.49 -0.38 -0.30 16 21 C -0.09 -0.63 9.42 -39.64 -0.37 -1.00 16 22 C -0.10 -0.87 5.40 -104.21 -0.56 -1.43 16 23 C 0.50 4.76 2.89 36.01 0.10 4.87 16 24 F -0.17 -1.39 15.98 2.25 0.04 -1.35 16 25 F -0.17 -1.75 16.53 2.25 0.04 -1.71 16 26 F -0.17 -1.83 16.53 2.25 0.04 -1.79 16 27 H 0.17 1.54 7.61 -52.48 -0.40 1.14 16 28 H 0.42 5.09 8.65 -34.47 -0.30 4.79 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.21 7.75 -51.93 -0.40 0.81 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.16 0.88 7.61 -52.49 -0.40 0.48 16 35 H 0.16 0.68 7.15 -52.49 -0.38 0.30 16 LS Contribution 343.85 15.07 5.18 5.18 Total: -1.00 -32.16 343.85 -6.82 -38.98 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -2.68 Total: -1.72 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -3.29 Total: -12.70 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: 1.45 Total: -43.49 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -1.94 Total: -28.85 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.11 Total: -4.85 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 32.57 SS G_CDS: -0.62 Total: 31.96 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.16 -6.82 -38.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282369266.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.572 kcal (2) G-P(sol) polarization free energy of solvation -32.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.45 seconds