Wall clock time and date at job start Wed Apr 1 2020 05:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39648 * 120.14903 * 152.39806 * 3 2 1 5 5 C 1.37926 * 119.84654 * 180.02562 * 4 3 2 6 6 S 1.76199 * 119.92634 * 179.97438 * 5 4 3 7 7 O 1.42106 * 106.40138 * 23.55660 * 6 5 4 8 8 O 1.42093 * 106.40566 * 156.48032 * 6 5 4 9 9 N 1.65601 * 107.21913 * 270.02410 * 6 5 4 10 10 C 1.46502 * 120.00232 * 64.99330 * 9 6 5 11 11 C 1.53000 * 109.47147 * 164.99953 * 10 9 6 12 12 C 1.50701 * 109.47056 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00097 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99821 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00057 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99838 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46799 * 60.00264 * 16 14 12 18 18 H 1.48499 * 109.47073 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47180 * 300.00697 * 16 14 12 20 20 C 1.38387 * 120.15098 * 0.02562 * 5 4 3 21 21 C 1.38338 * 120.30572 * 0.23762 * 20 5 4 22 22 C 1.37970 * 120.15004 * 359.47927 * 21 20 5 23 23 C 1.50699 * 120.08035 * 180.25842 * 22 21 20 24 24 F 1.39903 * 109.46663 * 0.28058 * 23 22 21 25 25 F 1.39898 * 109.47289 * 120.28134 * 23 22 21 26 26 F 1.39898 * 109.47279 * 240.28412 * 23 22 21 27 27 H 1.08006 * 120.07807 * 0.03581 * 4 3 2 28 28 H 0.96998 * 120.00415 * 245.00117 * 9 6 5 29 29 H 1.09001 * 109.47509 * 285.00530 * 10 9 6 30 30 H 1.08999 * 109.46913 * 45.00549 * 10 9 6 31 31 H 1.08997 * 109.47299 * 300.00168 * 11 10 9 32 32 H 1.09004 * 109.47100 * 60.00764 * 11 10 9 33 33 H 0.96998 * 119.99457 * 179.97438 * 15 14 12 34 34 H 1.08002 * 119.84428 * 179.97438 * 20 5 4 35 35 H 1.08000 * 119.92773 * 179.72462 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2690 1.0711 -0.5595 5 6 4.6482 1.0650 -0.5566 6 16 5.5347 2.4142 -1.2626 7 8 4.6567 3.5312 -1.2318 8 8 6.8168 2.4164 -0.6501 9 7 5.7805 2.0567 -2.8607 10 6 4.6377 1.9456 -3.7707 11 6 5.1325 1.9849 -5.2180 12 6 3.9569 1.8712 -6.1540 13 1 2.9568 1.7805 -5.7564 14 6 4.1580 1.8841 -7.5180 15 7 5.3757 1.9951 -8.0021 16 14 2.7007 1.7439 -8.6783 17 1 1.7694 2.8763 -8.4422 18 1 3.1809 1.7819 -10.0829 19 1 1.9933 0.4617 -8.4319 20 6 5.3375 0.0011 -0.0014 21 6 4.6495 -1.0650 0.5496 22 6 3.2698 -1.0692 0.5587 23 6 2.5220 -2.2288 1.1647 24 9 3.4358 -3.1678 1.6550 25 9 1.7182 -1.7686 2.2132 26 9 1.7178 -2.8265 0.1883 27 1 2.7323 1.9019 -0.9933 28 1 6.6810 1.9207 -3.1944 29 1 4.1190 1.0042 -3.5894 30 1 3.9537 2.7764 -3.5980 31 1 5.6511 2.9262 -5.3992 32 1 5.8165 1.1540 -5.3908 33 1 5.5171 2.0037 -8.9617 34 1 6.4175 0.0013 -0.0022 35 1 5.1935 -1.8942 0.9773 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282369266.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:05 Heat of formation + Delta-G solvation = -191.232379 kcal Electronic energy + Delta-G solvation = -27711.271427 eV Core-core repulsion = 22999.810374 eV Total energy + Delta-G solvation = -4711.461053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.054 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -51.43732 -48.91985 -48.91730 -41.00739 -38.41252 -37.85513 -37.01841 -36.96957 -34.69970 -33.82224 -32.89111 -30.96569 -27.88069 -26.38760 -25.43668 -23.85129 -22.94959 -21.52616 -20.29377 -19.75741 -19.71616 -19.37424 -18.67512 -18.15512 -17.88075 -17.33543 -16.68269 -16.40027 -15.97616 -15.95542 -15.76999 -15.48245 -15.42007 -15.37207 -15.26319 -15.10478 -15.01877 -14.84662 -14.56004 -14.39049 -14.22650 -13.95407 -13.38929 -13.32216 -13.27182 -13.23811 -13.18218 -12.95953 -12.92825 -12.44718 -12.36931 -12.09795 -11.45365 -11.30093 -11.09252 -10.58765 -10.45828 -10.29118 -8.17885 -6.27025 -1.16562 -0.71101 -0.47009 1.20656 1.25573 1.33210 1.45594 1.46362 1.53795 1.94513 2.17491 2.23753 2.40452 2.45076 2.65262 2.66847 3.07787 3.17982 3.19772 3.44960 3.74181 3.86274 3.94602 4.24087 4.31963 4.42305 4.54618 4.60922 4.68301 4.89548 5.03183 5.18358 5.55388 5.71204 5.86535 6.03009 6.08425 6.27228 6.89551 7.42199 8.93610 Molecular weight = 348.05amu Principal moments of inertia in cm(-1) A = 0.010487 B = 0.003343 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.260217 B = 8374.827717 C = 9869.417318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C 0.249 3.751 3 C -0.007 4.007 4 C 0.025 3.975 5 C -0.651 4.651 6 S 2.713 3.287 7 O -0.978 6.978 8 O -0.965 6.965 9 N -1.105 6.105 10 C 0.127 3.873 11 C 0.018 3.982 12 C -0.542 4.542 13 H 0.067 0.933 14 C 0.007 3.993 15 N -0.928 5.928 16 Si 0.955 3.045 17 H -0.270 1.270 18 H -0.287 1.287 19 H -0.268 1.268 20 C 0.023 3.977 21 C -0.074 4.074 22 C -0.095 4.095 23 C 0.503 3.497 24 F -0.157 7.157 25 F -0.176 7.176 26 F -0.178 7.178 27 H 0.168 0.832 28 H 0.426 0.574 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.002 0.998 32 H 0.013 0.987 33 H 0.263 0.737 34 H 0.193 0.807 35 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.517 -8.654 20.571 22.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.087 5.087 2 C -0.067 4.067 3 C -0.011 4.011 4 C 0.003 3.997 5 C -0.738 4.738 6 S 2.802 3.198 7 O -0.968 6.968 8 O -0.955 6.955 9 N -0.868 5.868 10 C 0.001 3.999 11 C -0.020 4.020 12 C -0.581 4.581 13 H 0.085 0.915 14 C -0.192 4.192 15 N -0.568 5.568 16 Si 0.781 3.219 17 H -0.195 1.195 18 H -0.212 1.212 19 H -0.193 1.193 20 C 0.004 3.996 21 C -0.093 4.093 22 C -0.099 4.099 23 C 0.449 3.551 24 F -0.139 7.139 25 F -0.157 7.157 26 F -0.159 7.159 27 H 0.185 0.815 28 H 0.263 0.737 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.021 0.979 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.210 0.790 35 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -0.115 -7.908 20.941 22.385 hybrid contribution -0.540 -0.826 -1.057 1.446 sum -0.655 -8.734 19.885 21.728 Atomic orbital electron populations 1.81279 1.12520 1.06921 1.07932 1.25615 0.92682 0.94343 0.94069 1.15560 0.83994 0.96970 1.04571 1.21112 0.92495 0.95699 0.90345 1.31253 1.05467 1.20909 1.16128 1.01279 0.72871 0.73574 0.72060 1.93586 1.68197 1.48562 1.86498 1.93582 1.39425 1.86986 1.75551 1.55320 1.16526 1.89456 1.25459 1.21389 0.86695 1.01394 0.90397 1.19159 0.96107 0.96451 0.90311 1.21561 0.94490 1.50253 0.91788 0.91528 1.25808 0.98176 0.94896 1.00276 1.70054 1.22142 1.51212 1.13420 0.85644 0.79569 0.79086 0.77619 1.19519 1.21232 1.19271 1.21673 1.02977 0.88161 0.86825 1.21538 0.90335 1.00366 0.97037 1.20407 0.96309 0.92847 1.00303 1.18273 0.77705 0.82736 0.76385 1.93227 1.65754 1.66769 1.88104 1.93257 1.74798 1.88714 1.58945 1.93268 1.74811 1.85087 1.62717 0.81498 0.73742 0.90713 0.91153 0.97915 0.96899 0.92807 0.79009 0.78690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -11.62 18.54 19.01 0.35 -11.27 16 2 C 0.25 5.93 13.19 88.33 1.17 7.09 16 3 C -0.01 -0.12 5.71 -21.36 -0.12 -0.25 16 4 C 0.03 0.46 9.23 22.54 0.21 0.67 16 5 C -0.65 -11.10 5.94 22.23 0.13 -10.97 16 6 S 2.71 61.25 5.74 -56.49 -0.32 60.92 16 7 O -0.98 -28.63 16.74 -128.00 -2.14 -30.77 16 8 O -0.97 -23.40 17.27 -128.00 -2.21 -25.61 16 9 N -1.11 -28.20 6.00 -187.49 -1.12 -29.32 16 10 C 0.13 4.16 6.16 86.38 0.53 4.69 16 11 C 0.02 0.84 5.11 29.85 0.15 0.99 16 12 C -0.54 -27.84 9.11 25.60 0.23 -27.60 16 13 H 0.07 3.23 7.74 -2.91 -0.02 3.21 16 14 C 0.01 0.38 5.46 84.66 0.46 0.84 16 15 N -0.93 -52.84 13.29 21.45 0.28 -52.56 16 16 Si 0.96 41.93 29.54 68.60 2.03 43.96 16 17 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 18 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 20 C 0.02 0.26 9.52 22.33 0.21 0.47 16 21 C -0.07 -0.73 9.42 22.23 0.21 -0.52 16 22 C -0.09 -1.45 5.40 -19.60 -0.11 -1.56 16 23 C 0.50 8.50 2.89 71.24 0.21 8.71 16 24 F -0.16 -2.14 15.98 44.97 0.72 -1.42 16 25 F -0.18 -3.41 16.53 44.97 0.74 -2.67 16 26 F -0.18 -3.67 16.53 44.97 0.74 -2.93 16 27 H 0.17 2.98 7.61 -2.91 -0.02 2.96 16 28 H 0.43 9.91 8.65 -96.75 -0.84 9.07 16 29 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.07 2.33 7.75 -2.39 -0.02 2.31 16 31 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 34 H 0.19 1.12 7.61 -2.91 -0.02 1.09 16 35 H 0.20 0.59 7.15 -2.91 -0.02 0.56 16 Total: -1.00 -69.49 343.85 2.70 -66.79 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: 0.35 Total: 2.31 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: 3.29 Total: -17.43 kcal Atomic # 7 Polarization: -92.67 SS G_CDS: -0.49 Total: -93.15 kcal Atomic # 8 Polarization: -52.03 SS G_CDS: -4.35 Total: -56.39 kcal Atomic # 9 Polarization: -9.22 SS G_CDS: 2.20 Total: -7.01 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Atomic # 16 Polarization: 61.25 SS G_CDS: -0.32 Total: 60.92 kcal Total: -69.49 2.70 -66.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282369266.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.439 kcal (2) G-P(sol) polarization free energy of solvation -69.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds