Wall clock time and date at job start Wed Apr 1 2020 05:23:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 N 1.46494 * 109.47191 * 2 1
4 4 C 1.36946 * 119.99988 * 275.96749 * 3 2 1
5 5 H 1.07994 * 119.99690 * 146.59849 * 4 3 2
6 6 C 1.38808 * 119.99499 * 326.59965 * 4 3 2
7 7 N 1.31615 * 120.00676 * 336.10297 * 6 4 3
8 8 Si 1.86806 * 119.99698 * 156.10356 * 6 4 3
9 9 H 1.48505 * 109.47031 * 0.02562 * 8 6 4
10 10 H 1.48502 * 109.47194 * 119.99766 * 8 6 4
11 11 H 1.48500 * 109.47235 * 240.00082 * 8 6 4
12 12 S 1.65599 * 120.00198 * 95.96746 * 3 2 1
13 13 O 1.42104 * 106.40013 * 156.45737 * 12 3 2
14 14 O 1.42099 * 106.39981 * 23.54219 * 12 3 2
15 15 C 1.76198 * 107.22152 * 269.99764 * 12 3 2
16 16 C 1.38389 * 119.92295 * 89.99504 * 15 12 3
17 17 C 1.38332 * 120.30474 * 180.25570 * 16 15 12
18 18 C 1.37968 * 120.15219 * 359.49625 * 17 16 15
19 19 C 1.50702 * 120.07781 * 180.25859 * 18 17 16
20 20 F 1.39895 * 109.47328 * 0.27043 * 19 18 17
21 21 F 1.39898 * 109.47397 * 120.27585 * 19 18 17
22 22 F 1.39902 * 109.46710 * 240.27107 * 19 18 17
23 23 C 1.39615 * 119.84401 * 0.52578 * 18 17 16
24 24 C 1.43206 * 120.14895 * 179.70660 * 23 18 17
25 25 N 7.82870 * 71.38674 * 12.04655 * 2 1 3
26 26 C 1.37920 * 119.92718 * 270.02474 * 15 12 3
27 27 H 1.09007 * 109.47130 * 60.00032 * 1 2 3
28 28 H 1.08995 * 109.47620 * 180.02562 * 1 2 3
29 29 H 1.08994 * 109.47294 * 300.00383 * 1 2 3
30 30 H 1.08996 * 109.46784 * 239.99535 * 2 1 3
31 31 H 1.08995 * 109.46714 * 119.99890 * 2 1 3
32 32 H 0.96996 * 120.00182 * 179.97438 * 7 6 4
33 33 H 1.08003 * 119.84363 * 359.97438 * 16 15 12
34 34 H 1.08000 * 119.92734 * 179.72980 * 17 16 15
35 35 H 1.08010 * 120.07675 * 359.97438 * 26 15 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.1304 2.0678 -1.1796
5 1 1.9554 3.1332 -1.2028
6 6 2.4688 1.3943 -2.3452
7 7 3.1247 0.2551 -2.2803
8 14 1.9931 2.1049 -4.0060
9 1 1.2677 3.3853 -3.8072
10 1 3.2182 2.3501 -4.8087
11 1 1.1158 1.1445 -4.7225
12 16 2.4350 2.1121 1.4263
13 8 3.3460 3.1508 1.0938
14 8 2.7469 1.0667 2.3368
15 6 0.9881 2.9004 2.0506
16 6 0.1336 2.2092 2.8916
17 6 -1.0072 2.8187 3.3820
18 6 -1.2953 4.1248 3.0435
19 6 -2.5356 4.7890 3.5835
20 9 -3.2267 3.8903 4.4031
21 9 -2.1741 5.9165 4.3285
22 9 -3.3575 5.1768 2.5198
23 6 -0.4379 4.8279 2.1951
24 6 -0.7339 6.1818 1.8345
25 7 -0.9687 7.2558 1.5484
26 6 0.7093 4.2048 1.6995
27 1 -0.3634 0.5139 -0.8900
28 1 -0.3634 -1.0276 0.0005
29 1 -0.3633 0.5139 0.8899
30 1 1.8933 -0.5139 -0.8899
31 1 1.8933 -0.5138 0.8900
32 1 3.3608 -0.2157 -3.0948
33 1 0.3563 1.1877 3.1626
34 1 -1.6721 2.2721 4.0344
35 1 1.3770 4.7431 1.0430
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000282990264.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:23:15
Heat of formation + Delta-G solvation = -151.797040 kcal
Electronic energy + Delta-G solvation = -28919.598821 eV
Core-core repulsion = 24209.847812 eV
Total energy + Delta-G solvation = -4709.751009 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 348.054 amu
Computer time = 4.19 seconds
Orbital eigenvalues (eV)
-50.49756 -48.01507 -47.93644 -39.88655 -36.68548 -36.37056 -36.04806 -34.91033
-32.67283 -31.85170 -31.77611 -29.38545 -26.78013 -24.77909 -24.30547 -22.75789
-21.79008 -20.15908 -18.80921 -18.79515 -18.72160 -18.24564 -17.09086 -16.54680
-16.39525 -15.98780 -14.96664 -14.95260 -14.86770 -14.64150 -14.46155 -14.40008
-14.21423 -14.13472 -14.08189 -13.86070 -13.58663 -13.43471 -13.02781 -12.97000
-12.81571 -12.51351 -12.16114 -12.03837 -11.93476 -11.43229 -11.22306 -11.13779
-11.06130 -10.98860 -10.58179 -10.50287 -10.31107 -10.06761 -9.78951 -9.37308
-9.23223 -7.90054 -6.42913 -4.10306 -0.01260 0.61971 1.17622 2.21598
2.37447 2.46785 3.11116 3.21235 3.23269 3.25158 3.25979 3.46977
3.61420 3.95105 4.05307 4.27348 4.37640 4.53176 4.71581 4.83146
4.87698 4.98680 5.28244 5.40362 5.53800 5.60650 5.85637 5.94398
6.13870 6.22178 6.22874 6.43380 6.79933 7.15031 7.16558 7.26846
7.63709 8.25668 8.82347 9.20152 10.57841
Molecular weight = 348.05amu
Principal moments of inertia in cm(-1)
A = 0.013982 B = 0.004063 C = 0.003756
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2002.162337 B = 6889.735996 C = 7452.210107
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.109 3.891
3 N -0.837 5.837
4 C -0.279 4.279
5 H 0.095 0.905
6 C 0.041 3.959
7 N -0.848 5.848
8 Si 0.916 3.084
9 H -0.267 1.267
10 H -0.280 1.280
11 H -0.279 1.279
12 S 2.612 3.388
13 O -0.963 6.963
14 O -0.988 6.988
15 C -0.623 4.623
16 C 0.003 3.997
17 C -0.093 4.093
18 C -0.108 4.108
19 C 0.504 3.496
20 F -0.170 7.170
21 F -0.171 7.171
22 F -0.170 7.170
23 C 0.000 4.000
24 C 0.240 3.760
25 N -0.383 5.383
26 C 0.029 3.971
27 H 0.060 0.940
28 H 0.050 0.950
29 H 0.036 0.964
30 H 0.117 0.883
31 H 0.062 0.938
32 H 0.270 0.730
33 H 0.159 0.841
34 H 0.156 0.844
35 H 0.163 0.837
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.908 1.127 8.731 13.254
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C -0.018 4.018
3 N -0.669 5.669
4 C -0.417 4.417
5 H 0.112 0.888
6 C -0.168 4.168
7 N -0.487 5.487
8 Si 0.742 3.258
9 H -0.191 1.191
10 H -0.206 1.206
11 H -0.204 1.204
12 S 2.707 3.293
13 O -0.952 6.952
14 O -0.977 6.977
15 C -0.703 4.703
16 C -0.017 4.017
17 C -0.112 4.112
18 C -0.112 4.112
19 C 0.450 3.550
20 F -0.151 7.151
21 F -0.152 7.152
22 F -0.151 7.151
23 C -0.005 4.005
24 C -0.077 4.077
25 N -0.057 5.057
26 C 0.008 3.992
27 H 0.079 0.921
28 H 0.069 0.931
29 H 0.055 0.945
30 H 0.135 0.865
31 H 0.080 0.920
32 H 0.080 0.920
33 H 0.177 0.823
34 H 0.173 0.827
35 H 0.180 0.820
Dipole moment (debyes) X Y Z Total
from point charges -9.450 2.760 8.796 13.202
hybrid contribution -1.064 0.234 -0.549 1.220
sum -10.514 2.994 8.247 13.694
Atomic orbital electron populations
1.22212 0.98510 1.00290 1.01311 1.21439 0.91742 0.83523 1.05049
1.52701 1.76195 1.20862 1.17123 1.19209 1.44783 0.94258 0.83447
0.88768 1.25363 0.94850 0.96797 0.99783 1.69962 1.33083 1.16485
1.29217 0.86054 0.78644 0.79338 0.81795 1.19074 1.20612 1.20448
1.06117 0.73628 0.74268 0.75265 1.93465 1.58625 1.59717 1.83421
1.93432 1.82067 1.55245 1.66961 1.32104 1.24248 1.05019 1.08884
1.21245 0.90279 1.00143 0.89990 1.21088 0.98055 0.92294 0.99714
1.20166 0.94292 0.96422 1.00314 1.18254 0.83809 0.76910 0.76048
1.93189 1.81076 1.67410 1.73419 1.93254 1.91641 1.52942 1.77386
1.93264 1.74320 1.91336 1.56165 1.15605 0.97186 0.87002 1.00675
1.25386 0.94863 0.92643 0.94758 1.81226 1.06441 1.11022 1.07027
1.21045 0.92580 0.92537 0.93018 0.92053 0.93131 0.94535 0.86538
0.91967 0.91990 0.82299 0.82675 0.81980
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 28.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.61 10.20 37.16 0.38 -2.23 16
2 C 0.11 2.14 6.01 -4.04 -0.02 2.12 16
3 N -0.84 -17.85 2.85 -59.91 -0.17 -18.02 16
4 C -0.28 -6.46 8.87 -15.06 -0.13 -6.59 16
5 H 0.09 2.09 7.94 -52.49 -0.42 1.68 16
6 C 0.04 0.96 4.98 -17.43 -0.09 0.87 16
7 N -0.85 -20.78 11.27 55.49 0.63 -20.16 16
8 Si 0.92 18.49 29.62 -169.99 -5.03 13.45 16
9 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16
10 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16
11 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16
12 S 2.61 51.94 5.65 -107.50 -0.61 51.33 16
13 O -0.96 -21.93 16.49 -57.17 -0.94 -22.87 16
14 O -0.99 -20.64 15.82 -57.17 -0.90 -21.54 16
15 C -0.62 -9.57 5.97 -39.64 -0.24 -9.81 16
16 C 0.00 0.04 8.52 -39.49 -0.34 -0.30 16
17 C -0.09 -0.98 9.42 -39.65 -0.37 -1.35 16
18 C -0.11 -1.29 5.40 -104.21 -0.56 -1.86 16
19 C 0.50 5.88 2.89 36.01 0.10 5.98 16
20 F -0.17 -1.75 15.98 2.25 0.04 -1.71 16
21 F -0.17 -2.13 16.53 2.25 0.04 -2.09 16
22 F -0.17 -2.15 16.53 2.25 0.04 -2.12 16
23 C 0.00 -0.01 5.71 -106.93 -0.61 -0.62 16
24 C 0.24 3.50 13.19 -22.47 -0.30 3.20 16
25 N -0.38 -6.11 18.54 41.84 0.78 -5.33 16
26 C 0.03 0.43 9.23 -39.17 -0.36 0.07 16
27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16
28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
29 H 0.04 0.50 7.11 -51.93 -0.37 0.13 16
30 H 0.12 2.56 5.31 -51.93 -0.28 2.28 16
31 H 0.06 1.17 6.90 -51.93 -0.36 0.81 16
32 H 0.27 6.21 8.31 -40.82 -0.34 5.87 16
33 H 0.16 1.72 7.61 -52.48 -0.40 1.32 16
34 H 0.16 1.15 7.15 -52.49 -0.38 0.78 16
35 H 0.16 2.32 7.61 -52.48 -0.40 1.92 16
LS Contribution 335.19 15.07 5.05 5.05
Total: -1.00 -28.04 335.19 -6.21 -34.25
By element:
Atomic # 1 Polarization: 2.83 SS G_CDS: -2.57 Total: 0.26 kcal
Atomic # 6 Polarization: -7.97 SS G_CDS: -2.54 Total: -10.51 kcal
Atomic # 7 Polarization: -44.74 SS G_CDS: 1.23 Total: -43.51 kcal
Atomic # 8 Polarization: -42.57 SS G_CDS: -1.85 Total: -44.41 kcal
Atomic # 9 Polarization: -6.03 SS G_CDS: 0.11 Total: -5.92 kcal
Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.45 kcal
Atomic # 16 Polarization: 51.94 SS G_CDS: -0.61 Total: 51.33 kcal
Total LS contribution 5.05 Total: 5.05 kcal
Total: -28.04 -6.21 -34.25 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000282990264.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -117.543 kcal
(2) G-P(sol) polarization free energy of solvation -28.043 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.587 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.210 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.254 kcal
(6) G-S(sol) free energy of system = (1) + (5) -151.797 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 4.19 seconds