Wall clock time and date at job start Wed Apr 1 2020 05:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46494 * 109.47191 * 2 1 4 4 C 1.36946 * 119.99988 * 275.96749 * 3 2 1 5 5 H 1.07994 * 119.99690 * 146.59849 * 4 3 2 6 6 C 1.38808 * 119.99499 * 326.59965 * 4 3 2 7 7 N 1.31615 * 120.00676 * 336.10297 * 6 4 3 8 8 Si 1.86806 * 119.99698 * 156.10356 * 6 4 3 9 9 H 1.48505 * 109.47031 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47194 * 119.99766 * 8 6 4 11 11 H 1.48500 * 109.47235 * 240.00082 * 8 6 4 12 12 S 1.65599 * 120.00198 * 95.96746 * 3 2 1 13 13 O 1.42104 * 106.40013 * 156.45737 * 12 3 2 14 14 O 1.42099 * 106.39981 * 23.54219 * 12 3 2 15 15 C 1.76198 * 107.22152 * 269.99764 * 12 3 2 16 16 C 1.38389 * 119.92295 * 89.99504 * 15 12 3 17 17 C 1.38332 * 120.30474 * 180.25570 * 16 15 12 18 18 C 1.37968 * 120.15219 * 359.49625 * 17 16 15 19 19 C 1.50702 * 120.07781 * 180.25859 * 18 17 16 20 20 F 1.39895 * 109.47328 * 0.27043 * 19 18 17 21 21 F 1.39898 * 109.47397 * 120.27585 * 19 18 17 22 22 F 1.39902 * 109.46710 * 240.27107 * 19 18 17 23 23 C 1.39615 * 119.84401 * 0.52578 * 18 17 16 24 24 C 1.43206 * 120.14895 * 179.70660 * 23 18 17 25 25 N 7.82870 * 71.38674 * 12.04655 * 2 1 3 26 26 C 1.37920 * 119.92718 * 270.02474 * 15 12 3 27 27 H 1.09007 * 109.47130 * 60.00032 * 1 2 3 28 28 H 1.08995 * 109.47620 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47294 * 300.00383 * 1 2 3 30 30 H 1.08996 * 109.46784 * 239.99535 * 2 1 3 31 31 H 1.08995 * 109.46714 * 119.99890 * 2 1 3 32 32 H 0.96996 * 120.00182 * 179.97438 * 7 6 4 33 33 H 1.08003 * 119.84363 * 359.97438 * 16 15 12 34 34 H 1.08000 * 119.92734 * 179.72980 * 17 16 15 35 35 H 1.08010 * 120.07675 * 359.97438 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1304 2.0678 -1.1796 5 1 1.9554 3.1332 -1.2028 6 6 2.4688 1.3943 -2.3452 7 7 3.1247 0.2551 -2.2803 8 14 1.9931 2.1049 -4.0060 9 1 1.2677 3.3853 -3.8072 10 1 3.2182 2.3501 -4.8087 11 1 1.1158 1.1445 -4.7225 12 16 2.4350 2.1121 1.4263 13 8 3.3460 3.1508 1.0938 14 8 2.7469 1.0667 2.3368 15 6 0.9881 2.9004 2.0506 16 6 0.1336 2.2092 2.8916 17 6 -1.0072 2.8187 3.3820 18 6 -1.2953 4.1248 3.0435 19 6 -2.5356 4.7890 3.5835 20 9 -3.2267 3.8903 4.4031 21 9 -2.1741 5.9165 4.3285 22 9 -3.3575 5.1768 2.5198 23 6 -0.4379 4.8279 2.1951 24 6 -0.7339 6.1818 1.8345 25 7 -0.9687 7.2558 1.5484 26 6 0.7093 4.2048 1.6995 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.3608 -0.2157 -3.0948 33 1 0.3563 1.1877 3.1626 34 1 -1.6721 2.2721 4.0344 35 1 1.3770 4.7431 1.0430 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282990264.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:15 Heat of formation + Delta-G solvation = -151.797040 kcal Electronic energy + Delta-G solvation = -28919.598821 eV Core-core repulsion = 24209.847812 eV Total energy + Delta-G solvation = -4709.751009 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.054 amu Computer time = 4.19 seconds Orbital eigenvalues (eV) -50.49756 -48.01507 -47.93644 -39.88655 -36.68548 -36.37056 -36.04806 -34.91033 -32.67283 -31.85170 -31.77611 -29.38545 -26.78013 -24.77909 -24.30547 -22.75789 -21.79008 -20.15908 -18.80921 -18.79515 -18.72160 -18.24564 -17.09086 -16.54680 -16.39525 -15.98780 -14.96664 -14.95260 -14.86770 -14.64150 -14.46155 -14.40008 -14.21423 -14.13472 -14.08189 -13.86070 -13.58663 -13.43471 -13.02781 -12.97000 -12.81571 -12.51351 -12.16114 -12.03837 -11.93476 -11.43229 -11.22306 -11.13779 -11.06130 -10.98860 -10.58179 -10.50287 -10.31107 -10.06761 -9.78951 -9.37308 -9.23223 -7.90054 -6.42913 -4.10306 -0.01260 0.61971 1.17622 2.21598 2.37447 2.46785 3.11116 3.21235 3.23269 3.25158 3.25979 3.46977 3.61420 3.95105 4.05307 4.27348 4.37640 4.53176 4.71581 4.83146 4.87698 4.98680 5.28244 5.40362 5.53800 5.60650 5.85637 5.94398 6.13870 6.22178 6.22874 6.43380 6.79933 7.15031 7.16558 7.26846 7.63709 8.25668 8.82347 9.20152 10.57841 Molecular weight = 348.05amu Principal moments of inertia in cm(-1) A = 0.013982 B = 0.004063 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.162337 B = 6889.735996 C = 7452.210107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.109 3.891 3 N -0.837 5.837 4 C -0.279 4.279 5 H 0.095 0.905 6 C 0.041 3.959 7 N -0.848 5.848 8 Si 0.916 3.084 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.279 1.279 12 S 2.612 3.388 13 O -0.963 6.963 14 O -0.988 6.988 15 C -0.623 4.623 16 C 0.003 3.997 17 C -0.093 4.093 18 C -0.108 4.108 19 C 0.504 3.496 20 F -0.170 7.170 21 F -0.171 7.171 22 F -0.170 7.170 23 C 0.000 4.000 24 C 0.240 3.760 25 N -0.383 5.383 26 C 0.029 3.971 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.036 0.964 30 H 0.117 0.883 31 H 0.062 0.938 32 H 0.270 0.730 33 H 0.159 0.841 34 H 0.156 0.844 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.908 1.127 8.731 13.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.018 4.018 3 N -0.669 5.669 4 C -0.417 4.417 5 H 0.112 0.888 6 C -0.168 4.168 7 N -0.487 5.487 8 Si 0.742 3.258 9 H -0.191 1.191 10 H -0.206 1.206 11 H -0.204 1.204 12 S 2.707 3.293 13 O -0.952 6.952 14 O -0.977 6.977 15 C -0.703 4.703 16 C -0.017 4.017 17 C -0.112 4.112 18 C -0.112 4.112 19 C 0.450 3.550 20 F -0.151 7.151 21 F -0.152 7.152 22 F -0.151 7.151 23 C -0.005 4.005 24 C -0.077 4.077 25 N -0.057 5.057 26 C 0.008 3.992 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.135 0.865 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.177 0.823 34 H 0.173 0.827 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.450 2.760 8.796 13.202 hybrid contribution -1.064 0.234 -0.549 1.220 sum -10.514 2.994 8.247 13.694 Atomic orbital electron populations 1.22212 0.98510 1.00290 1.01311 1.21439 0.91742 0.83523 1.05049 1.52701 1.76195 1.20862 1.17123 1.19209 1.44783 0.94258 0.83447 0.88768 1.25363 0.94850 0.96797 0.99783 1.69962 1.33083 1.16485 1.29217 0.86054 0.78644 0.79338 0.81795 1.19074 1.20612 1.20448 1.06117 0.73628 0.74268 0.75265 1.93465 1.58625 1.59717 1.83421 1.93432 1.82067 1.55245 1.66961 1.32104 1.24248 1.05019 1.08884 1.21245 0.90279 1.00143 0.89990 1.21088 0.98055 0.92294 0.99714 1.20166 0.94292 0.96422 1.00314 1.18254 0.83809 0.76910 0.76048 1.93189 1.81076 1.67410 1.73419 1.93254 1.91641 1.52942 1.77386 1.93264 1.74320 1.91336 1.56165 1.15605 0.97186 0.87002 1.00675 1.25386 0.94863 0.92643 0.94758 1.81226 1.06441 1.11022 1.07027 1.21045 0.92580 0.92537 0.93018 0.92053 0.93131 0.94535 0.86538 0.91967 0.91990 0.82299 0.82675 0.81980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 10.20 37.16 0.38 -2.23 16 2 C 0.11 2.14 6.01 -4.04 -0.02 2.12 16 3 N -0.84 -17.85 2.85 -59.91 -0.17 -18.02 16 4 C -0.28 -6.46 8.87 -15.06 -0.13 -6.59 16 5 H 0.09 2.09 7.94 -52.49 -0.42 1.68 16 6 C 0.04 0.96 4.98 -17.43 -0.09 0.87 16 7 N -0.85 -20.78 11.27 55.49 0.63 -20.16 16 8 Si 0.92 18.49 29.62 -169.99 -5.03 13.45 16 9 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 10 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 11 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 12 S 2.61 51.94 5.65 -107.50 -0.61 51.33 16 13 O -0.96 -21.93 16.49 -57.17 -0.94 -22.87 16 14 O -0.99 -20.64 15.82 -57.17 -0.90 -21.54 16 15 C -0.62 -9.57 5.97 -39.64 -0.24 -9.81 16 16 C 0.00 0.04 8.52 -39.49 -0.34 -0.30 16 17 C -0.09 -0.98 9.42 -39.65 -0.37 -1.35 16 18 C -0.11 -1.29 5.40 -104.21 -0.56 -1.86 16 19 C 0.50 5.88 2.89 36.01 0.10 5.98 16 20 F -0.17 -1.75 15.98 2.25 0.04 -1.71 16 21 F -0.17 -2.13 16.53 2.25 0.04 -2.09 16 22 F -0.17 -2.15 16.53 2.25 0.04 -2.12 16 23 C 0.00 -0.01 5.71 -106.93 -0.61 -0.62 16 24 C 0.24 3.50 13.19 -22.47 -0.30 3.20 16 25 N -0.38 -6.11 18.54 41.84 0.78 -5.33 16 26 C 0.03 0.43 9.23 -39.17 -0.36 0.07 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.04 0.50 7.11 -51.93 -0.37 0.13 16 30 H 0.12 2.56 5.31 -51.93 -0.28 2.28 16 31 H 0.06 1.17 6.90 -51.93 -0.36 0.81 16 32 H 0.27 6.21 8.31 -40.82 -0.34 5.87 16 33 H 0.16 1.72 7.61 -52.48 -0.40 1.32 16 34 H 0.16 1.15 7.15 -52.49 -0.38 0.78 16 35 H 0.16 2.32 7.61 -52.48 -0.40 1.92 16 LS Contribution 335.19 15.07 5.05 5.05 Total: -1.00 -28.04 335.19 -6.21 -34.25 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -2.57 Total: 0.26 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -2.54 Total: -10.51 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 1.23 Total: -43.51 kcal Atomic # 8 Polarization: -42.57 SS G_CDS: -1.85 Total: -44.41 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 0.11 Total: -5.92 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.45 kcal Atomic # 16 Polarization: 51.94 SS G_CDS: -0.61 Total: 51.33 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.04 -6.21 -34.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282990264.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.543 kcal (2) G-P(sol) polarization free energy of solvation -28.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.19 seconds