Wall clock time and date at job start Wed Apr 1 2020 05:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38256 * 119.99754 * 2 1 4 4 C 1.38214 * 119.99782 * 180.02562 * 3 2 1 5 5 C 1.50708 * 119.99960 * 179.97438 * 4 3 2 6 6 F 1.39907 * 109.46959 * 89.99711 * 5 4 3 7 7 F 1.39896 * 109.47000 * 209.99730 * 5 4 3 8 8 F 1.39897 * 109.47031 * 329.99518 * 5 4 3 9 9 C 1.38258 * 120.00340 * 359.96931 * 4 3 2 10 10 C 1.38221 * 119.99446 * 359.75243 * 9 4 3 11 11 C 1.38204 * 120.00142 * 179.97438 * 2 1 3 12 12 S 1.76211 * 120.00055 * 0.02562 * 11 2 1 13 13 O 1.42099 * 106.39975 * 182.14405 * 12 11 2 14 14 O 1.42100 * 106.39852 * 49.22993 * 12 11 2 15 15 N 1.65601 * 107.21765 * 295.68936 * 12 11 2 16 16 C 1.36929 * 119.99835 * 279.70647 * 15 12 11 17 17 H 1.08007 * 120.00083 * 7.19203 * 16 15 12 18 18 C 1.38813 * 120.00342 * 187.19326 * 16 15 12 19 19 N 1.31622 * 119.99351 * 24.11269 * 18 16 15 20 20 Si 1.86794 * 120.00489 * 204.11816 * 18 16 15 21 21 H 1.48497 * 109.47317 * 89.99616 * 20 18 16 22 22 H 1.48498 * 109.47375 * 209.99613 * 20 18 16 23 23 H 1.48501 * 109.46916 * 329.99574 * 20 18 16 24 24 C 1.46495 * 119.99891 * 99.43567 * 15 12 11 25 25 C 1.47194 * 109.47508 * 92.65864 * 24 15 12 26 26 N 6.13377 * 50.82815 * 166.38448 * 2 1 3 27 27 H 1.09001 * 109.47828 * 264.21596 * 1 2 3 28 28 H 1.09003 * 109.47267 * 24.21657 * 1 2 3 29 29 H 1.09001 * 109.47264 * 144.21217 * 1 2 3 30 30 H 1.07995 * 120.00423 * 359.97085 * 3 2 1 31 31 H 1.07995 * 120.00467 * 179.97438 * 9 4 3 32 32 H 1.08000 * 119.99586 * 180.27456 * 10 9 4 33 33 H 0.97007 * 119.99503 * 180.02562 * 19 18 16 34 34 H 1.09002 * 109.46849 * 212.66426 * 24 15 12 35 35 H 1.09004 * 109.47356 * 332.65496 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 -0.0005 5 6 4.3338 2.5025 -0.0011 6 9 4.5675 2.9067 1.3178 7 9 5.5560 2.3351 -0.6610 8 9 3.5775 3.4773 -0.6606 9 6 4.2717 0.0001 -0.0004 10 6 3.5806 -1.1969 0.0054 11 6 2.1980 -1.1969 0.0005 12 16 1.3170 -2.7229 0.0005 13 8 2.2961 -3.7514 0.0521 14 8 0.3459 -2.6255 -1.0323 15 7 0.4775 -2.8043 1.4257 16 6 1.1158 -3.1862 2.5753 17 1 2.1873 -3.3219 2.5786 18 6 0.3857 -3.3992 3.7366 19 7 -0.8925 -3.7043 3.6636 20 14 1.2173 -3.2525 5.4028 21 1 1.1104 -1.8532 5.8880 22 1 0.5533 -4.1636 6.3694 23 1 2.6494 -3.6244 5.2757 24 6 -0.9465 -2.4619 1.4575 25 6 -1.7487 -3.6810 1.2653 26 7 -2.3674 -4.6216 1.1194 27 1 -0.3635 -0.1036 1.0224 28 1 -0.3634 0.9372 -0.4215 29 1 -0.3634 -0.8336 -0.6010 30 1 1.6582 2.1326 -0.0005 31 1 5.3516 0.0000 -0.0013 32 1 4.1206 -2.1322 0.0099 33 1 -1.4028 -3.8527 4.4752 34 1 -1.1910 -2.0141 2.4207 35 1 -1.1675 -1.7521 0.6604 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283015675.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:40 Heat of formation + Delta-G solvation = -144.299313 kcal Electronic energy + Delta-G solvation = -29035.278082 eV Core-core repulsion = 24325.852200 eV Total energy + Delta-G solvation = -4709.425883 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.054 amu Computer time = 3.76 seconds Orbital eigenvalues (eV) -50.33497 -47.85436 -47.78790 -39.53182 -36.99134 -36.53209 -35.15654 -34.49982 -33.30008 -31.89913 -31.62517 -27.93004 -26.89234 -26.36942 -24.20635 -22.65220 -21.76701 -18.95001 -18.66397 -18.59809 -18.27764 -18.15947 -17.70927 -16.91162 -16.09635 -15.69033 -14.85879 -14.84054 -14.62063 -14.53756 -14.34441 -14.24521 -14.03724 -14.00282 -13.94767 -13.79870 -13.65660 -13.35095 -13.07825 -12.55882 -12.30161 -12.25026 -11.98661 -11.77463 -11.54060 -11.44259 -11.40915 -11.28890 -11.11442 -11.08476 -10.57789 -10.42507 -10.29751 -10.18155 -9.77810 -9.50468 -8.88640 -8.47522 -6.60295 -4.10336 0.48193 1.04099 1.18292 2.46507 3.07950 3.12113 3.18181 3.20082 3.51144 3.60033 3.84269 4.01199 4.15945 4.24037 4.25660 4.43038 4.58115 4.68422 4.76455 4.95429 5.08182 5.28504 5.30950 5.42240 5.53799 5.67644 5.73947 5.81792 5.93417 5.98745 6.15392 6.23766 6.40889 6.67749 6.78476 7.28885 8.04302 8.56128 8.89252 8.97171 10.43368 Molecular weight = 348.05amu Principal moments of inertia in cm(-1) A = 0.013680 B = 0.004206 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.339105 B = 6656.263169 C = 7464.470849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.020 3.980 3 C -0.098 4.098 4 C -0.143 4.143 5 C 0.507 3.493 6 F -0.175 7.175 7 F -0.177 7.177 8 F -0.177 7.177 9 C -0.104 4.104 10 C -0.021 4.021 11 C -0.641 4.641 12 S 2.643 3.357 13 O -0.954 6.954 14 O -0.972 6.972 15 N -0.831 5.831 16 C -0.318 4.318 17 H 0.115 0.885 18 C 0.049 3.951 19 N -0.860 5.860 20 Si 0.913 3.087 21 H -0.275 1.275 22 H -0.284 1.284 23 H -0.268 1.268 24 C 0.224 3.776 25 C 0.257 3.743 26 N -0.476 5.476 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.113 0.887 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.152 0.848 33 H 0.276 0.724 34 H 0.128 0.872 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.593 13.501 -4.141 15.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.019 3.981 3 C -0.117 4.117 4 C -0.145 4.145 5 C 0.453 3.547 6 F -0.156 7.156 7 F -0.158 7.158 8 F -0.158 7.158 9 C -0.122 4.122 10 C -0.040 4.040 11 C -0.721 4.721 12 S 2.732 3.268 13 O -0.944 6.944 14 O -0.961 6.961 15 N -0.662 5.662 16 C -0.451 4.451 17 H 0.133 0.867 18 C -0.159 4.159 19 N -0.498 5.498 20 Si 0.739 3.261 21 H -0.200 1.200 22 H -0.209 1.209 23 H -0.192 1.192 24 C 0.094 3.906 25 C -0.062 4.062 26 N -0.156 5.156 27 H 0.116 0.884 28 H 0.102 0.898 29 H 0.131 0.869 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.169 0.831 33 H 0.087 0.913 34 H 0.146 0.854 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.627 11.563 -4.989 13.793 hybrid contribution 1.185 1.451 1.503 2.402 sum 6.812 13.014 -3.486 15.097 Atomic orbital electron populations 1.21950 0.90070 1.06560 1.05117 1.19447 0.96279 0.91011 0.91354 1.20892 0.92036 0.99068 0.99659 1.20118 0.95148 0.92004 1.07190 1.18360 0.77400 0.85045 0.73874 1.93239 1.94675 1.91759 1.35915 1.93189 1.45940 1.95548 1.81131 1.93188 1.75879 1.65599 1.81148 1.21001 1.00545 0.91177 0.99511 1.20972 0.92371 0.98759 0.91879 1.32172 1.06610 1.22740 1.10529 1.04552 0.73429 0.75340 0.73457 1.93496 1.60974 1.53457 1.86452 1.93457 1.59916 1.87257 1.55500 1.53297 1.12991 1.73982 1.25895 1.19341 0.93857 1.45184 0.86678 0.86706 1.25052 0.95522 0.95857 0.99420 1.69905 1.08508 1.41644 1.29791 0.86145 0.79854 0.78404 0.81714 1.20049 1.20939 1.19231 1.18728 0.79071 0.88257 1.04512 1.28967 0.92894 0.94855 0.89448 1.80832 1.11109 1.10285 1.13388 0.88388 0.89798 0.86899 0.84300 0.84324 0.83065 0.91282 0.85400 0.88887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 90. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 7.87 36.00 0.28 -1.94 16 2 C 0.02 0.29 5.87 -104.63 -0.61 -0.33 16 3 C -0.10 -1.24 9.03 -39.58 -0.36 -1.59 16 4 C -0.14 -1.82 5.45 -104.62 -0.57 -2.39 16 5 C 0.51 5.90 3.36 36.01 0.12 6.02 16 6 F -0.17 -2.11 17.30 2.25 0.04 -2.07 16 7 F -0.18 -2.02 16.46 2.25 0.04 -1.98 16 8 F -0.18 -2.01 16.46 2.25 0.04 -1.97 16 9 C -0.10 -1.33 9.40 -39.58 -0.37 -1.70 16 10 C -0.02 -0.31 9.55 -39.58 -0.38 -0.69 16 11 C -0.64 -10.39 5.90 -39.59 -0.23 -10.63 16 12 S 2.64 51.54 5.00 -107.50 -0.54 51.00 16 13 O -0.95 -21.10 16.17 -57.17 -0.92 -22.02 16 14 O -0.97 -19.48 14.44 -57.17 -0.83 -20.31 16 15 N -0.83 -17.09 2.81 -62.78 -0.18 -17.26 16 16 C -0.32 -7.10 9.36 -15.06 -0.14 -7.24 16 17 H 0.12 2.53 7.66 -52.48 -0.40 2.13 16 18 C 0.05 1.10 4.94 -17.43 -0.09 1.02 16 19 N -0.86 -20.14 8.96 55.49 0.50 -19.65 16 20 Si 0.91 17.95 29.62 -169.99 -5.03 12.91 16 21 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 22 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 24 C 0.22 4.24 3.90 -6.83 -0.03 4.22 16 25 C 0.26 5.80 13.40 -20.79 -0.28 5.52 16 26 N -0.48 -11.63 18.53 42.12 0.78 -10.85 16 27 H 0.10 1.11 6.60 -51.93 -0.34 0.76 16 28 H 0.08 0.78 8.05 -51.93 -0.42 0.36 16 29 H 0.11 1.56 4.01 -51.93 -0.21 1.35 16 30 H 0.14 1.40 7.60 -52.49 -0.40 1.00 16 31 H 0.14 1.42 7.60 -52.49 -0.40 1.02 16 32 H 0.15 2.09 7.34 -52.49 -0.39 1.71 16 33 H 0.28 6.28 8.31 -40.82 -0.34 5.94 16 34 H 0.13 2.37 6.37 -51.93 -0.33 2.03 16 35 H 0.09 1.42 4.10 -51.93 -0.21 1.21 16 LS Contribution 322.76 15.07 4.86 4.86 Total: -1.00 -28.55 322.76 -6.13 -34.68 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -2.23 Total: 2.38 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -2.65 Total: -9.72 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: 1.10 Total: -47.76 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -1.75 Total: -42.33 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 0.11 Total: -6.03 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.91 kcal Atomic # 16 Polarization: 51.54 SS G_CDS: -0.54 Total: 51.00 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.55 -6.13 -34.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283015675.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.619 kcal (2) G-P(sol) polarization free energy of solvation -28.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.76 seconds