Wall clock time and date at job start Wed Apr 1 2020 05:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38256 * 119.99754 * 2 1 4 4 C 1.38214 * 119.99782 * 180.02562 * 3 2 1 5 5 C 1.50708 * 119.99960 * 179.97438 * 4 3 2 6 6 F 1.39907 * 109.46959 * 89.99711 * 5 4 3 7 7 F 1.39896 * 109.47000 * 209.99730 * 5 4 3 8 8 F 1.39897 * 109.47031 * 329.99518 * 5 4 3 9 9 C 1.38258 * 120.00340 * 359.96931 * 4 3 2 10 10 C 1.38221 * 119.99446 * 359.75243 * 9 4 3 11 11 C 1.38204 * 120.00142 * 179.97438 * 2 1 3 12 12 S 1.76211 * 120.00055 * 0.02562 * 11 2 1 13 13 O 1.42099 * 106.39975 * 182.14405 * 12 11 2 14 14 O 1.42100 * 106.39852 * 49.22993 * 12 11 2 15 15 N 1.65601 * 107.21765 * 295.68936 * 12 11 2 16 16 C 1.36929 * 119.99835 * 279.70647 * 15 12 11 17 17 H 1.08007 * 120.00083 * 7.19203 * 16 15 12 18 18 C 1.38813 * 120.00342 * 187.19326 * 16 15 12 19 19 N 1.31622 * 119.99351 * 24.11269 * 18 16 15 20 20 Si 1.86794 * 120.00489 * 204.11816 * 18 16 15 21 21 H 1.48497 * 109.47317 * 89.99616 * 20 18 16 22 22 H 1.48498 * 109.47375 * 209.99613 * 20 18 16 23 23 H 1.48501 * 109.46916 * 329.99574 * 20 18 16 24 24 C 1.46495 * 119.99891 * 99.43567 * 15 12 11 25 25 C 1.47194 * 109.47508 * 92.65864 * 24 15 12 26 26 N 6.13377 * 50.82815 * 166.38448 * 2 1 3 27 27 H 1.09001 * 109.47828 * 264.21596 * 1 2 3 28 28 H 1.09003 * 109.47267 * 24.21657 * 1 2 3 29 29 H 1.09001 * 109.47264 * 144.21217 * 1 2 3 30 30 H 1.07995 * 120.00423 * 359.97085 * 3 2 1 31 31 H 1.07995 * 120.00467 * 179.97438 * 9 4 3 32 32 H 1.08000 * 119.99586 * 180.27456 * 10 9 4 33 33 H 0.97007 * 119.99503 * 180.02562 * 19 18 16 34 34 H 1.09002 * 109.46849 * 212.66426 * 24 15 12 35 35 H 1.09004 * 109.47356 * 332.65496 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 -0.0005 5 6 4.3338 2.5025 -0.0011 6 9 4.5675 2.9067 1.3178 7 9 5.5560 2.3351 -0.6610 8 9 3.5775 3.4773 -0.6606 9 6 4.2717 0.0001 -0.0004 10 6 3.5806 -1.1969 0.0054 11 6 2.1980 -1.1969 0.0005 12 16 1.3170 -2.7229 0.0005 13 8 2.2961 -3.7514 0.0521 14 8 0.3459 -2.6255 -1.0323 15 7 0.4775 -2.8043 1.4257 16 6 1.1158 -3.1862 2.5753 17 1 2.1873 -3.3219 2.5786 18 6 0.3857 -3.3992 3.7366 19 7 -0.8925 -3.7043 3.6636 20 14 1.2173 -3.2525 5.4028 21 1 1.1104 -1.8532 5.8880 22 1 0.5533 -4.1636 6.3694 23 1 2.6494 -3.6244 5.2757 24 6 -0.9465 -2.4619 1.4575 25 6 -1.7487 -3.6810 1.2653 26 7 -2.3674 -4.6216 1.1194 27 1 -0.3635 -0.1036 1.0224 28 1 -0.3634 0.9372 -0.4215 29 1 -0.3634 -0.8336 -0.6010 30 1 1.6582 2.1326 -0.0005 31 1 5.3516 0.0000 -0.0013 32 1 4.1206 -2.1322 0.0099 33 1 -1.4028 -3.8527 4.4752 34 1 -1.1910 -2.0141 2.4207 35 1 -1.1675 -1.7521 0.6604 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283015675.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:37 Heat of formation + Delta-G solvation = -161.413897 kcal Electronic energy + Delta-G solvation = -29036.020227 eV Core-core repulsion = 24325.852200 eV Total energy + Delta-G solvation = -4710.168027 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.054 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -51.23627 -48.74149 -48.69666 -40.64121 -38.60080 -38.18373 -36.85911 -36.25954 -34.39962 -33.26414 -32.96772 -29.38465 -28.00927 -27.44704 -25.83504 -23.75865 -22.84996 -20.51131 -19.91190 -19.55902 -19.47258 -19.20653 -19.15032 -18.41270 -17.65142 -16.96847 -16.39681 -15.99157 -15.83715 -15.53068 -15.47360 -15.37142 -15.13613 -15.10775 -14.91931 -14.84742 -14.83656 -14.75252 -14.23630 -14.08306 -13.75590 -13.48851 -13.32954 -13.20990 -13.12693 -13.02597 -12.98999 -12.72954 -12.62309 -12.44152 -12.16633 -11.98019 -11.78066 -11.71788 -11.30587 -10.71196 -10.10812 -9.93237 -8.20547 -5.83099 -0.73074 -0.45008 0.12045 1.51726 1.52190 1.56857 1.63935 1.84044 2.16064 2.35266 2.44944 2.57246 2.67158 2.82365 2.91663 3.09988 3.32457 3.37393 3.64921 3.72835 3.73819 4.02622 4.17202 4.31843 4.34190 4.50277 4.72270 4.75994 4.84179 4.86385 4.94321 5.11802 5.24675 5.31066 5.59518 5.64465 6.41123 6.95639 7.14829 7.34611 8.83497 Molecular weight = 348.05amu Principal moments of inertia in cm(-1) A = 0.013680 B = 0.004206 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.339105 B = 6656.263169 C = 7464.470849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.020 3.980 3 C -0.093 4.093 4 C -0.138 4.138 5 C 0.516 3.484 6 F -0.176 7.176 7 F -0.174 7.174 8 F -0.172 7.172 9 C -0.100 4.100 10 C -0.031 4.031 11 C -0.649 4.649 12 S 2.681 3.319 13 O -0.991 6.991 14 O -0.982 6.982 15 N -0.857 5.857 16 C -0.338 4.338 17 H 0.108 0.892 18 C 0.011 3.989 19 N -0.903 5.903 20 Si 0.968 3.032 21 H -0.264 1.264 22 H -0.298 1.298 23 H -0.271 1.271 24 C 0.228 3.772 25 C 0.261 3.739 26 N -0.523 5.523 27 H 0.110 0.890 28 H 0.121 0.879 29 H 0.096 0.904 30 H 0.172 0.828 31 H 0.166 0.834 32 H 0.154 0.846 33 H 0.268 0.732 34 H 0.137 0.863 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.068 16.950 -5.009 19.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.019 3.981 3 C -0.111 4.111 4 C -0.140 4.140 5 C 0.462 3.538 6 F -0.157 7.157 7 F -0.155 7.155 8 F -0.153 7.153 9 C -0.118 4.118 10 C -0.050 4.050 11 C -0.737 4.737 12 S 2.776 3.224 13 O -0.982 6.982 14 O -0.972 6.972 15 N -0.689 5.689 16 C -0.467 4.467 17 H 0.125 0.875 18 C -0.191 4.191 19 N -0.544 5.544 20 Si 0.794 3.206 21 H -0.189 1.189 22 H -0.225 1.225 23 H -0.196 1.196 24 C 0.099 3.901 25 C -0.057 4.057 26 N -0.204 5.204 27 H 0.128 0.872 28 H 0.140 0.860 29 H 0.114 0.886 30 H 0.190 0.810 31 H 0.184 0.816 32 H 0.172 0.828 33 H 0.079 0.921 34 H 0.155 0.845 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.074 14.936 -5.778 17.508 hybrid contribution 0.948 0.542 1.409 1.782 sum 8.022 15.479 -4.370 17.973 Atomic orbital electron populations 1.22084 0.88746 1.07948 1.05876 1.19718 0.97378 0.90691 0.90342 1.21220 0.92142 0.99587 0.98152 1.20383 0.95550 0.92555 1.05488 1.18115 0.77345 0.84520 0.73858 1.93248 1.94670 1.91702 1.36065 1.93203 1.45754 1.95515 1.81061 1.93206 1.75771 1.65318 1.81035 1.21229 1.01954 0.90257 0.98400 1.21108 0.91789 1.00074 0.92064 1.31061 1.06974 1.20171 1.15450 1.01785 0.73263 0.74890 0.72512 1.93467 1.62566 1.55382 1.86741 1.93473 1.60345 1.87598 1.55748 1.52879 1.14374 1.78405 1.23279 1.19337 0.93206 1.47885 0.86269 0.87474 1.25543 0.96056 0.96011 1.01508 1.69992 1.09247 1.45715 1.29432 0.85314 0.78386 0.78341 0.78597 1.18898 1.22460 1.19557 1.19200 0.77393 0.87172 1.06328 1.30010 0.92252 0.95330 0.88072 1.80799 1.12575 1.11915 1.15156 0.87200 0.86011 0.88609 0.81048 0.81613 0.82844 0.92148 0.84519 0.85100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 54. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.00 7.87 71.23 0.56 -3.44 16 2 C 0.02 0.50 5.87 -19.87 -0.12 0.38 16 3 C -0.09 -1.90 9.03 22.27 0.20 -1.70 16 4 C -0.14 -2.91 5.45 -19.86 -0.11 -3.02 16 5 C 0.52 9.76 3.36 71.24 0.24 10.00 16 6 F -0.18 -3.55 17.30 44.97 0.78 -2.78 16 7 F -0.17 -3.28 16.46 44.97 0.74 -2.54 16 8 F -0.17 -3.13 16.46 44.97 0.74 -2.39 16 9 C -0.10 -2.19 9.40 22.27 0.21 -1.98 16 10 C -0.03 -0.85 9.55 22.27 0.21 -0.63 16 11 C -0.65 -19.67 5.90 22.27 0.13 -19.54 16 12 S 2.68 103.30 5.00 -56.49 -0.28 103.02 16 13 O -0.99 -44.33 16.17 -128.00 -2.07 -46.40 16 14 O -0.98 -38.54 14.44 -128.00 -1.85 -40.39 16 15 N -0.86 -35.35 2.81 -352.53 -0.99 -36.34 16 16 C -0.34 -15.41 9.36 84.03 0.79 -14.62 16 17 H 0.11 4.86 7.66 -2.91 -0.02 4.83 16 18 C 0.01 0.51 4.94 84.86 0.42 0.93 16 19 N -0.90 -43.87 8.96 21.65 0.19 -43.68 16 20 Si 0.97 37.76 29.62 68.60 2.03 39.79 16 21 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 22 H -0.30 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 24 C 0.23 8.63 3.90 84.57 0.33 8.96 16 25 C 0.26 12.05 13.40 89.45 1.20 13.25 16 26 N -0.52 -26.44 18.53 20.00 0.37 -26.07 16 27 H 0.11 2.11 6.60 -2.39 -0.02 2.10 16 28 H 0.12 1.63 8.05 -2.39 -0.02 1.61 16 29 H 0.10 2.39 4.01 -2.39 -0.01 2.38 16 30 H 0.17 2.43 7.60 -2.91 -0.02 2.40 16 31 H 0.17 2.70 7.60 -2.91 -0.02 2.68 16 32 H 0.15 4.05 7.34 -2.91 -0.02 4.03 16 33 H 0.27 12.79 8.31 -92.70 -0.77 12.02 16 34 H 0.14 5.07 6.37 -2.39 -0.02 5.05 16 35 H 0.13 3.81 4.10 -2.39 -0.01 3.80 16 Total: -1.00 -63.39 322.76 4.92 -58.47 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 1.19 Total: 10.71 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: 4.06 Total: -11.40 kcal Atomic # 7 Polarization: -105.66 SS G_CDS: -0.42 Total: -106.09 kcal Atomic # 8 Polarization: -82.87 SS G_CDS: -3.92 Total: -86.79 kcal Atomic # 9 Polarization: -9.97 SS G_CDS: 2.26 Total: -7.71 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 2.03 Total: 39.79 kcal Atomic # 16 Polarization: 103.30 SS G_CDS: -0.28 Total: 103.02 kcal Total: -63.39 4.92 -58.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283015675.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.949 kcal (2) G-P(sol) polarization free energy of solvation -63.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds