Wall clock time and date at job start Wed Apr 1 2020 05:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46997 * 2 1 4 4 C 1.36935 * 120.00161 * 272.90205 * 3 2 1 5 5 H 1.08001 * 120.00442 * 176.45609 * 4 3 2 6 6 C 1.38813 * 119.99832 * 356.46194 * 4 3 2 7 7 N 1.31624 * 120.00383 * 30.74484 * 6 4 3 8 8 Si 1.86805 * 119.99898 * 210.75521 * 6 4 3 9 9 H 1.48497 * 109.47049 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47451 * 119.99704 * 8 6 4 11 11 H 1.48507 * 109.46721 * 239.99556 * 8 6 4 12 12 S 1.65601 * 120.00021 * 92.90547 * 3 2 1 13 13 O 1.42093 * 106.40223 * 341.66167 * 12 3 2 14 14 O 1.42097 * 106.40351 * 208.73662 * 12 3 2 15 15 C 1.76201 * 107.21453 * 95.20046 * 12 3 2 16 16 C 1.38383 * 119.85431 * 345.56383 * 15 12 3 17 17 C 1.37920 * 120.15757 * 179.97438 * 16 15 12 18 18 C 1.39651 * 119.84557 * 0.02562 * 17 16 15 19 19 C 1.43194 * 120.15120 * 180.02562 * 18 17 16 20 20 N 8.32550 * 159.37275 * 62.45362 * 2 1 3 21 21 C 1.39619 * 119.69996 * 0.27138 * 18 17 16 22 22 C 1.37965 * 119.84201 * 359.46703 * 21 18 17 23 23 C 1.50699 * 119.92418 * 180.23225 * 22 21 18 24 24 F 1.39905 * 109.47119 * 353.77015 * 23 22 21 25 25 F 1.39900 * 109.47152 * 113.76853 * 23 22 21 26 26 F 1.39899 * 109.47213 * 233.76723 * 23 22 21 27 27 H 1.09002 * 109.47160 * 300.00561 * 1 2 3 28 28 H 1.09003 * 109.46504 * 60.00288 * 1 2 3 29 29 H 1.09002 * 109.47036 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47540 * 239.99780 * 2 1 3 31 31 H 1.08996 * 109.47115 * 119.99546 * 2 1 3 32 32 H 0.96997 * 119.99800 * 180.02562 * 7 6 4 33 33 H 1.07999 * 119.91692 * 359.97438 * 16 15 12 34 34 H 1.08003 * 120.08122 * 179.97438 * 17 16 15 35 35 H 1.07994 * 120.07817 * 179.73146 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1899 2.0468 -1.1844 5 1 2.4949 3.0828 -1.1824 6 6 1.9718 1.3899 -2.3876 7 7 1.0788 0.4255 -2.4585 8 14 2.9458 1.8743 -3.9062 9 1 3.8789 2.9778 -3.5646 10 1 3.7196 0.7038 -4.3923 11 1 2.0126 2.3269 -4.9691 12 16 2.3628 2.1377 1.4323 13 8 1.6999 1.3963 2.4472 14 8 2.1457 3.5251 1.2157 15 6 4.0900 1.9437 1.7222 16 6 4.8117 1.0176 0.9898 17 6 6.1640 0.8611 1.2111 18 6 6.8047 1.6394 2.1775 19 6 8.2085 1.4826 2.4124 20 7 9.3218 1.3564 2.6005 21 6 6.0694 2.5675 2.9172 22 6 4.7183 2.7176 2.6816 23 6 3.9238 3.7225 3.4753 24 9 4.7334 4.2721 4.4752 25 9 3.4770 4.7399 2.6254 26 9 2.8235 3.0884 4.0622 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 0.9267 -0.0338 -3.2992 33 1 4.3148 0.4161 0.2430 34 1 6.7260 0.1376 0.6391 35 1 6.5578 3.1695 3.6691 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299306051.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:03 Heat of formation + Delta-G solvation = -130.297779 kcal Electronic energy + Delta-G solvation = -29849.130796 eV Core-core repulsion = 25140.312066 eV Total energy + Delta-G solvation = -4708.818731 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.054 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -49.99360 -47.58112 -47.28066 -39.61601 -36.67757 -36.49352 -35.99493 -34.67546 -32.39263 -31.94431 -31.56473 -29.48422 -26.10993 -24.79795 -24.47279 -22.36240 -21.88079 -19.62916 -18.85290 -18.44713 -18.20825 -17.83912 -16.83297 -16.64714 -16.48954 -15.56399 -14.88927 -14.66117 -14.56287 -14.33721 -14.20230 -14.07824 -14.01777 -13.84432 -13.66955 -13.48228 -13.42506 -13.08910 -12.92354 -12.82340 -12.68255 -12.52643 -12.34332 -11.80878 -11.53750 -11.39421 -11.08676 -11.01414 -10.91414 -10.75442 -10.59041 -10.24983 -10.10698 -9.84788 -9.44942 -9.33355 -9.24767 -8.42550 -6.81090 -4.03113 0.26072 0.86377 1.26294 2.34802 2.55386 2.72686 2.98506 3.09861 3.14596 3.47225 3.50737 3.76129 3.78550 4.08873 4.12771 4.43674 4.54984 4.55945 4.67927 4.85556 5.17292 5.28731 5.52046 5.63482 5.66993 5.88542 5.95822 6.01256 6.40683 6.45315 6.53752 6.74428 6.95121 7.06035 7.18421 7.34135 7.64805 8.12780 8.47793 8.89851 10.12544 Molecular weight = 348.05amu Principal moments of inertia in cm(-1) A = 0.011318 B = 0.005487 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.376873 B = 5101.990353 C = 6331.587377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.128 3.872 3 N -0.803 5.803 4 C -0.277 4.277 5 H 0.123 0.877 6 C 0.055 3.945 7 N -0.802 5.802 8 Si 0.893 3.107 9 H -0.261 1.261 10 H -0.275 1.275 11 H -0.277 1.277 12 S 2.525 3.475 13 O -0.970 6.970 14 O -0.955 6.955 15 C -0.581 4.581 16 C -0.034 4.034 17 C -0.058 4.058 18 C -0.010 4.010 19 C 0.259 3.741 20 N -0.411 5.411 21 C -0.047 4.047 22 C -0.107 4.107 23 C 0.482 3.518 24 F -0.178 7.178 25 F -0.140 7.140 26 F -0.165 7.165 27 H 0.031 0.969 28 H 0.092 0.908 29 H 0.041 0.959 30 H 0.095 0.905 31 H 0.043 0.957 32 H 0.277 0.723 33 H 0.157 0.843 34 H 0.145 0.855 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.375 -1.072 3.297 6.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.003 3.997 3 N -0.631 5.631 4 C -0.421 4.421 5 H 0.140 0.860 6 C -0.159 4.159 7 N -0.440 5.440 8 Si 0.717 3.283 9 H -0.185 1.185 10 H -0.200 1.200 11 H -0.203 1.203 12 S 2.615 3.385 13 O -0.959 6.959 14 O -0.944 6.944 15 C -0.653 4.653 16 C -0.052 4.052 17 C -0.079 4.079 18 C -0.013 4.013 19 C -0.057 4.057 20 N -0.085 5.085 21 C -0.068 4.068 22 C -0.110 4.110 23 C 0.427 3.573 24 F -0.159 7.159 25 F -0.121 7.121 26 F -0.146 7.146 27 H 0.050 0.950 28 H 0.111 0.889 29 H 0.060 0.940 30 H 0.113 0.887 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.174 0.826 34 H 0.163 0.837 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.594 -0.925 4.382 7.971 hybrid contribution 0.742 0.155 -0.824 1.119 sum 7.336 -0.770 3.558 8.189 Atomic orbital electron populations 1.22020 0.95741 1.00144 1.02360 1.21228 0.95560 0.82228 1.00707 1.54181 1.63442 1.23526 1.21983 1.19774 1.43947 0.96030 0.82365 0.85956 1.25359 0.95379 0.95757 0.99422 1.70274 1.23596 1.22318 1.27837 0.86415 0.80982 0.79430 0.81454 1.18509 1.20029 1.20274 1.11635 0.76870 0.75534 0.74490 1.93463 1.72788 1.72300 1.57312 1.93512 1.84516 1.31127 1.85242 1.33182 1.34548 0.98916 0.98644 1.20923 0.93039 0.94787 0.96495 1.21542 0.95122 0.96662 0.94524 1.15883 0.85198 1.00211 1.00016 1.25508 0.92434 0.93876 0.93834 1.81255 1.11636 1.07825 1.07834 1.20975 0.92239 0.95929 0.97665 1.19372 0.94502 0.98242 0.98844 1.18626 0.78529 0.81710 0.78423 1.93149 1.73012 1.86842 1.62923 1.93426 1.89207 1.60327 1.69130 1.93323 1.54784 1.81596 1.84896 0.95030 0.88920 0.94028 0.88682 0.93852 0.91195 0.82576 0.83694 0.83444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 52. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.69 37.16 0.36 -2.50 16 2 C 0.13 2.52 5.05 -4.04 -0.02 2.50 16 3 N -0.80 -16.98 1.93 -59.91 -0.12 -17.09 16 4 C -0.28 -6.05 9.43 -15.06 -0.14 -6.19 16 5 H 0.12 2.73 7.42 -52.49 -0.39 2.34 16 6 C 0.05 1.14 4.95 -17.43 -0.09 1.05 16 7 N -0.80 -16.74 8.40 55.49 0.47 -16.28 16 8 Si 0.89 16.24 29.65 -169.99 -5.04 11.20 16 9 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 10 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 11 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 12 S 2.52 54.53 4.10 -107.50 -0.44 54.09 16 13 O -0.97 -22.50 15.56 -57.17 -0.89 -23.39 16 14 O -0.96 -22.83 13.72 -57.17 -0.78 -23.61 16 15 C -0.58 -10.40 5.80 -39.49 -0.23 -10.63 16 16 C -0.03 -0.50 9.54 -39.64 -0.38 -0.88 16 17 C -0.06 -0.69 9.76 -39.17 -0.38 -1.07 16 18 C -0.01 -0.12 5.73 -106.93 -0.61 -0.73 16 19 C 0.26 3.23 15.33 -22.47 -0.34 2.89 16 20 N -0.41 -5.77 18.54 41.84 0.78 -4.99 16 21 C -0.05 -0.63 9.13 -39.17 -0.36 -0.99 16 22 C -0.11 -1.79 5.38 -104.68 -0.56 -2.35 16 23 C 0.48 8.55 2.80 36.01 0.10 8.66 16 24 F -0.18 -2.66 15.99 2.25 0.04 -2.62 16 25 F -0.14 -2.75 14.34 2.25 0.03 -2.72 16 26 F -0.16 -3.22 14.74 2.25 0.03 -3.18 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.09 2.00 6.27 -51.93 -0.33 1.67 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.10 1.85 5.85 -51.93 -0.30 1.55 16 31 H 0.04 0.78 7.54 -51.93 -0.39 0.39 16 32 H 0.28 5.39 8.31 -40.82 -0.34 5.05 16 33 H 0.16 2.16 7.09 -52.49 -0.37 1.79 16 34 H 0.15 1.26 8.06 -52.48 -0.42 0.84 16 35 H 0.15 1.62 7.17 -52.49 -0.38 1.24 16 LS Contribution 324.88 15.07 4.90 4.90 Total: -1.00 -26.02 324.88 -6.25 -32.27 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -2.56 Total: 1.67 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -2.66 Total: -10.24 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 1.13 Total: -38.36 kcal Atomic # 8 Polarization: -45.33 SS G_CDS: -1.67 Total: -47.00 kcal Atomic # 9 Polarization: -8.62 SS G_CDS: 0.10 Total: -8.52 kcal Atomic # 14 Polarization: 16.24 SS G_CDS: -5.04 Total: 11.20 kcal Atomic # 16 Polarization: 54.53 SS G_CDS: -0.44 Total: 54.09 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -26.02 -6.25 -32.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299306051.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.027 kcal (2) G-P(sol) polarization free energy of solvation -26.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds