Wall clock time and date at job start Wed Apr 1 2020 05:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46997 * 2 1 4 4 C 1.36935 * 120.00161 * 272.90205 * 3 2 1 5 5 H 1.08001 * 120.00442 * 176.45609 * 4 3 2 6 6 C 1.38813 * 119.99832 * 356.46194 * 4 3 2 7 7 N 1.31624 * 120.00383 * 30.74484 * 6 4 3 8 8 Si 1.86805 * 119.99898 * 210.75521 * 6 4 3 9 9 H 1.48497 * 109.47049 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47451 * 119.99704 * 8 6 4 11 11 H 1.48507 * 109.46721 * 239.99556 * 8 6 4 12 12 S 1.65601 * 120.00021 * 92.90547 * 3 2 1 13 13 O 1.42093 * 106.40223 * 341.66167 * 12 3 2 14 14 O 1.42097 * 106.40351 * 208.73662 * 12 3 2 15 15 C 1.76201 * 107.21453 * 95.20046 * 12 3 2 16 16 C 1.38383 * 119.85431 * 345.56383 * 15 12 3 17 17 C 1.37920 * 120.15757 * 179.97438 * 16 15 12 18 18 C 1.39651 * 119.84557 * 0.02562 * 17 16 15 19 19 C 1.43194 * 120.15120 * 180.02562 * 18 17 16 20 20 N 8.32550 * 159.37275 * 62.45362 * 2 1 3 21 21 C 1.39619 * 119.69996 * 0.27138 * 18 17 16 22 22 C 1.37965 * 119.84201 * 359.46703 * 21 18 17 23 23 C 1.50699 * 119.92418 * 180.23225 * 22 21 18 24 24 F 1.39905 * 109.47119 * 353.77015 * 23 22 21 25 25 F 1.39900 * 109.47152 * 113.76853 * 23 22 21 26 26 F 1.39899 * 109.47213 * 233.76723 * 23 22 21 27 27 H 1.09002 * 109.47160 * 300.00561 * 1 2 3 28 28 H 1.09003 * 109.46504 * 60.00288 * 1 2 3 29 29 H 1.09002 * 109.47036 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47540 * 239.99780 * 2 1 3 31 31 H 1.08996 * 109.47115 * 119.99546 * 2 1 3 32 32 H 0.96997 * 119.99800 * 180.02562 * 7 6 4 33 33 H 1.07999 * 119.91692 * 359.97438 * 16 15 12 34 34 H 1.08003 * 120.08122 * 179.97438 * 17 16 15 35 35 H 1.07994 * 120.07817 * 179.73146 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1899 2.0468 -1.1844 5 1 2.4949 3.0828 -1.1824 6 6 1.9718 1.3899 -2.3876 7 7 1.0788 0.4255 -2.4585 8 14 2.9458 1.8743 -3.9062 9 1 3.8789 2.9778 -3.5646 10 1 3.7196 0.7038 -4.3923 11 1 2.0126 2.3269 -4.9691 12 16 2.3628 2.1377 1.4323 13 8 1.6999 1.3963 2.4472 14 8 2.1457 3.5251 1.2157 15 6 4.0900 1.9437 1.7222 16 6 4.8117 1.0176 0.9898 17 6 6.1640 0.8611 1.2111 18 6 6.8047 1.6394 2.1775 19 6 8.2085 1.4826 2.4124 20 7 9.3218 1.3564 2.6005 21 6 6.0694 2.5675 2.9172 22 6 4.7183 2.7176 2.6816 23 6 3.9238 3.7225 3.4753 24 9 4.7334 4.2721 4.4752 25 9 3.4770 4.7399 2.6254 26 9 2.8235 3.0884 4.0622 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 0.9267 -0.0338 -3.2992 33 1 4.3148 0.4161 0.2430 34 1 6.7260 0.1376 0.6391 35 1 6.5578 3.1695 3.6691 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299306051.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:59 Heat of formation + Delta-G solvation = -143.958708 kcal Electronic energy + Delta-G solvation = -29849.723179 eV Core-core repulsion = 25140.312066 eV Total energy + Delta-G solvation = -4709.411113 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.054 amu Computer time = 3.70 seconds Orbital eigenvalues (eV) -51.39654 -48.95623 -48.74311 -40.77754 -38.07666 -37.82353 -37.74823 -36.51909 -33.64589 -33.40848 -32.78105 -31.06806 -27.40307 -26.39133 -25.69738 -23.63382 -23.42775 -20.85020 -20.46820 -19.84066 -19.64070 -19.33181 -18.32746 -18.19177 -17.86705 -16.80522 -16.53744 -16.09453 -15.89642 -15.74648 -15.47752 -15.34269 -15.27941 -15.21109 -15.16652 -14.93654 -14.86783 -14.44482 -14.22691 -14.12520 -14.04854 -13.77287 -13.61387 -13.38620 -13.13890 -12.80729 -12.74731 -12.58669 -12.54969 -12.46635 -12.04837 -11.83703 -11.68655 -11.42853 -10.86298 -10.60331 -10.48631 -9.98747 -8.32206 -5.67554 -0.93933 -0.38807 -0.26023 1.24887 1.44057 1.47455 1.53600 1.61860 1.71024 2.20234 2.32859 2.40484 2.50474 2.57285 2.78375 2.84300 3.08470 3.13252 3.50916 3.73046 3.93844 4.04421 4.14409 4.40011 4.45250 4.53080 4.76296 4.83170 4.86386 4.94718 5.12912 5.33569 5.38948 5.49893 5.79183 6.00817 6.18134 6.54663 6.91268 7.32734 8.63827 Molecular weight = 348.05amu Principal moments of inertia in cm(-1) A = 0.011318 B = 0.005487 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.376873 B = 5101.990353 C = 6331.587377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.129 3.871 3 N -0.819 5.819 4 C -0.317 4.317 5 H 0.106 0.894 6 C 0.033 3.967 7 N -0.828 5.828 8 Si 0.949 3.051 9 H -0.267 1.267 10 H -0.265 1.265 11 H -0.286 1.286 12 S 2.562 3.438 13 O -0.992 6.992 14 O -0.985 6.985 15 C -0.610 4.610 16 C -0.034 4.034 17 C -0.035 4.035 18 C 0.008 3.992 19 C 0.282 3.718 20 N -0.429 5.429 21 C -0.035 4.035 22 C -0.122 4.122 23 C 0.475 3.525 24 F -0.160 7.160 25 F -0.156 7.156 26 F -0.180 7.180 27 H 0.015 0.985 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.100 0.900 31 H 0.058 0.942 32 H 0.280 0.720 33 H 0.165 0.835 34 H 0.189 0.811 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.166 -2.136 3.525 9.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.004 3.996 3 N -0.649 5.649 4 C -0.457 4.457 5 H 0.123 0.877 6 C -0.178 4.178 7 N -0.466 5.466 8 Si 0.773 3.227 9 H -0.191 1.191 10 H -0.189 1.189 11 H -0.212 1.212 12 S 2.656 3.344 13 O -0.981 6.981 14 O -0.975 6.975 15 C -0.689 4.689 16 C -0.052 4.052 17 C -0.055 4.055 18 C 0.005 3.995 19 C -0.034 4.034 20 N -0.104 5.104 21 C -0.056 4.056 22 C -0.125 4.125 23 C 0.421 3.579 24 F -0.141 7.141 25 F -0.137 7.137 26 F -0.162 7.162 27 H 0.034 0.966 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.182 0.818 34 H 0.206 0.794 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 9.310 -1.997 4.520 10.540 hybrid contribution 0.034 0.526 -0.624 0.817 sum 9.344 -1.471 3.896 10.230 Atomic orbital electron populations 1.22007 0.96405 1.01128 1.00558 1.21315 0.95128 0.81641 1.01515 1.53667 1.66303 1.23875 1.21050 1.19587 1.46990 0.96100 0.83038 0.87661 1.25724 0.95436 0.96022 1.00655 1.70300 1.24273 1.23607 1.28460 0.85592 0.79473 0.79079 0.78558 1.19088 1.18938 1.21249 1.08841 0.77304 0.74437 0.73868 1.93447 1.74090 1.72620 1.57908 1.93490 1.85639 1.32649 1.85704 1.32360 1.32180 1.02438 1.01901 1.21107 0.94306 0.93886 0.95936 1.21920 0.93829 0.96201 0.93560 1.15873 0.85022 0.99325 0.99304 1.25173 0.91862 0.93203 0.93164 1.81315 1.12253 1.08415 1.08396 1.21189 0.90720 0.95879 0.97815 1.19316 0.95753 0.98347 0.99084 1.18867 0.78481 0.81793 0.78787 1.93175 1.72224 1.86608 1.62130 1.93390 1.89519 1.61093 1.69738 1.93288 1.55851 1.81858 1.85156 0.96567 0.90803 0.91706 0.88221 0.92407 0.90898 0.81775 0.79408 0.80803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 78. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.73 9.69 71.98 0.70 -5.04 16 2 C 0.13 5.09 5.05 86.38 0.44 5.53 16 3 N -0.82 -35.20 1.93 -343.45 -0.66 -35.86 16 4 C -0.32 -14.23 9.43 84.03 0.79 -13.44 16 5 H 0.11 4.94 7.42 -2.91 -0.02 4.92 16 6 C 0.03 1.38 4.95 84.86 0.42 1.80 16 7 N -0.83 -35.04 8.40 21.65 0.18 -34.86 16 8 Si 0.95 33.50 29.65 68.60 2.03 35.53 16 9 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 10 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 11 H -0.29 -10.42 7.11 99.48 0.71 -9.71 16 12 S 2.56 112.07 4.10 -56.49 -0.23 111.84 16 13 O -0.99 -46.50 15.56 -128.00 -1.99 -48.50 16 14 O -0.99 -48.57 13.72 -128.00 -1.76 -50.33 16 15 C -0.61 -21.08 5.80 22.33 0.13 -20.95 16 16 C -0.03 -0.91 9.54 22.23 0.21 -0.69 16 17 C -0.03 -0.67 9.76 22.54 0.22 -0.45 16 18 C 0.01 0.17 5.73 -21.36 -0.12 0.04 16 19 C 0.28 5.76 15.33 88.33 1.35 7.12 16 20 N -0.43 -10.40 18.54 19.00 0.35 -10.05 16 21 C -0.04 -0.82 9.13 22.54 0.21 -0.62 16 22 C -0.12 -3.88 5.38 -19.90 -0.11 -3.98 16 23 C 0.48 16.58 2.80 71.24 0.20 16.78 16 24 F -0.16 -4.53 15.99 44.97 0.72 -3.81 16 25 F -0.16 -6.20 14.34 44.97 0.65 -5.56 16 26 F -0.18 -7.07 14.74 44.97 0.66 -6.40 16 27 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.07 3.28 6.27 -2.39 -0.01 3.27 16 29 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.10 3.86 5.85 -2.39 -0.01 3.85 16 31 H 0.06 2.05 7.54 -2.39 -0.02 2.04 16 32 H 0.28 10.98 8.31 -92.71 -0.77 10.21 16 33 H 0.16 4.19 7.09 -2.91 -0.02 4.17 16 34 H 0.19 2.11 8.06 -2.91 -0.02 2.08 16 35 H 0.17 3.10 7.17 -2.91 -0.02 3.08 16 Total: -1.00 -57.62 324.88 5.57 -52.05 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 1.18 Total: 9.85 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: 4.44 Total: -13.91 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -0.13 Total: -80.77 kcal Atomic # 8 Polarization: -95.07 SS G_CDS: -3.75 Total: -98.82 kcal Atomic # 9 Polarization: -17.79 SS G_CDS: 2.03 Total: -15.77 kcal Atomic # 14 Polarization: 33.50 SS G_CDS: 2.03 Total: 35.53 kcal Atomic # 16 Polarization: 112.07 SS G_CDS: -0.23 Total: 111.84 kcal Total: -57.62 5.57 -52.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299306051.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.906 kcal (2) G-P(sol) polarization free energy of solvation -57.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.70 seconds