Wall clock time and date at job start Wed Apr 1 2020 06:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47156 * 2 1 4 4 N 1.46495 * 109.47073 * 180.02562 * 3 2 1 5 5 C 1.36937 * 119.99773 * 275.97261 * 4 3 2 6 6 H 1.08001 * 120.00280 * 146.60286 * 5 4 3 7 7 C 1.38818 * 119.99890 * 326.59323 * 5 4 3 8 8 N 1.31617 * 120.00085 * 336.11071 * 7 5 4 9 9 Si 1.86798 * 119.99628 * 156.10891 * 7 5 4 10 10 H 1.48497 * 109.47353 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47205 * 120.00316 * 9 7 5 12 12 H 1.48501 * 109.47266 * 240.00236 * 9 7 5 13 13 S 1.65602 * 120.00195 * 95.97203 * 4 3 2 14 14 O 1.42100 * 106.40292 * 156.45755 * 13 4 3 15 15 O 1.42098 * 106.39694 * 23.53853 * 13 4 3 16 16 C 1.76201 * 107.21734 * 270.00016 * 13 4 3 17 17 C 1.38259 * 119.99781 * 269.98017 * 16 13 4 18 18 C 1.38211 * 119.99729 * 179.97438 * 17 16 13 19 19 C 1.38258 * 120.00146 * 359.97438 * 18 17 16 20 20 C 1.38208 * 120.00116 * 0.08452 * 19 18 17 21 21 S 1.76197 * 120.00294 * 179.97438 * 20 19 18 22 22 N 1.65609 * 107.21758 * 269.91245 * 21 20 19 23 23 O 1.42104 * 106.40110 * 23.44741 * 21 20 19 24 24 O 1.42097 * 106.40779 * 156.37379 * 21 20 19 25 25 C 1.38212 * 120.00162 * 89.99679 * 16 13 4 26 26 H 1.09003 * 109.47346 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46894 * 299.99912 * 1 2 3 28 28 H 1.09001 * 109.47403 * 59.99812 * 1 2 3 29 29 H 1.08998 * 109.47235 * 239.99891 * 2 1 3 30 30 H 1.08997 * 109.47101 * 119.99790 * 2 1 3 31 31 H 1.08998 * 109.47138 * 59.99831 * 3 2 1 32 32 H 1.09001 * 109.47118 * 300.00362 * 3 2 1 33 33 H 0.97000 * 119.99372 * 180.02562 * 8 7 5 34 34 H 1.08003 * 120.00068 * 359.97438 * 17 16 13 35 35 H 1.08002 * 119.99975 * 180.02562 * 18 17 16 36 36 H 1.07999 * 119.99633 * 180.02562 * 19 18 17 37 37 H 0.96999 * 119.99954 * 149.99615 * 22 21 20 38 38 H 0.97000 * 119.99634 * 330.00577 * 22 21 20 39 39 H 1.08003 * 119.99740 * 359.70186 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.3189 1.1786 6 1 5.1364 0.7988 1.2014 7 6 3.6685 1.8623 2.3446 8 7 2.8131 2.8605 2.2802 9 14 4.1806 1.1767 4.0050 10 1 5.1458 0.0660 3.8056 11 1 4.8205 2.2498 4.8077 12 1 2.9830 0.6696 4.7220 13 16 4.3324 1.5919 -1.4273 14 8 5.6155 2.1045 -1.0952 15 8 3.4503 2.2347 -2.3372 16 6 4.5929 -0.0349 -2.0520 17 6 5.7325 -0.7354 -1.7023 18 6 5.9366 -2.0117 -2.1919 19 6 5.0009 -2.5881 -3.0308 20 6 3.8624 -1.8874 -3.3813 21 16 2.6702 -2.6218 -4.4510 22 7 3.0925 -2.2239 -6.0021 23 8 2.8409 -4.0279 -4.3368 24 8 1.4377 -1.9647 -4.1896 25 6 3.6583 -0.6107 -2.8917 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 2.4489 3.2404 3.0951 34 1 6.4632 -0.2852 -1.0467 35 1 6.8266 -2.5590 -1.9185 36 1 5.1603 -3.5856 -3.4130 37 1 2.8792 -2.8257 -6.7323 38 1 3.5532 -1.3891 -6.1803 39 1 2.7659 -0.0652 -3.1612 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345525511.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:29:45 Heat of formation + Delta-G solvation = -144.675382 kcal Electronic energy + Delta-G solvation = -27637.819045 eV Core-core repulsion = 23605.677547 eV Total energy + Delta-G solvation = -4032.141499 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -40.35015 -38.34444 -38.16827 -37.91695 -37.01423 -36.67467 -34.30247 -34.12455 -32.73312 -32.65627 -32.43920 -27.63685 -25.51421 -24.71867 -24.41449 -22.27256 -21.04714 -20.33650 -19.84597 -18.85733 -18.43376 -18.23225 -18.00412 -17.32508 -17.17414 -16.76348 -16.40443 -16.21230 -15.81152 -15.50124 -15.18557 -15.05423 -14.50522 -14.46208 -13.60605 -13.57128 -13.50499 -13.37646 -13.30445 -13.26394 -13.25468 -13.11108 -13.06642 -12.94218 -12.67281 -12.43535 -12.20356 -12.17849 -12.06979 -11.88933 -11.70064 -11.43811 -11.37126 -10.97407 -10.83517 -10.43476 -9.62360 -8.18814 -5.93855 -0.75919 -0.55088 -0.37394 -0.18987 1.47767 1.51282 1.62640 1.89696 2.16060 2.34262 2.59461 2.66123 2.86758 3.13575 3.25157 3.55124 3.65168 3.80790 3.87578 4.21491 4.26013 4.32219 4.37205 4.53191 4.58240 4.67464 4.68476 4.88230 4.98530 5.04160 5.13733 5.21545 5.21649 5.30325 5.50292 5.54732 5.63612 5.93035 6.30600 6.47939 7.07360 7.42585 8.83100 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.014572 B = 0.004319 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.050869 B = 6481.680116 C = 6876.707095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.110 3.890 4 N -0.852 5.852 5 C -0.308 4.308 6 H 0.095 0.905 7 C -0.001 4.001 8 N -0.888 5.888 9 Si 0.975 3.025 10 H -0.257 1.257 11 H -0.284 1.284 12 H -0.276 1.276 13 S 2.633 3.367 14 O -1.000 7.000 15 O -1.015 7.015 16 C -0.684 4.684 17 C 0.022 3.978 18 C -0.147 4.147 19 C 0.031 3.969 20 C -0.699 4.699 21 S 2.729 3.271 22 N -1.230 6.230 23 O -0.978 6.978 24 O -0.990 6.990 25 C 0.056 3.944 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.054 0.946 33 H 0.269 0.731 34 H 0.149 0.851 35 H 0.183 0.817 36 H 0.184 0.816 37 H 0.433 0.567 38 H 0.429 0.571 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.617 -13.673 -12.051 18.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.174 4.174 3 C -0.017 4.017 4 N -0.684 5.684 5 C -0.442 4.442 6 H 0.112 0.888 7 C -0.206 4.206 8 N -0.529 5.529 9 Si 0.799 3.201 10 H -0.180 1.180 11 H -0.210 1.210 12 H -0.201 1.201 13 S 2.734 3.266 14 O -0.990 6.990 15 O -1.005 7.005 16 C -0.773 4.773 17 C 0.003 3.997 18 C -0.166 4.166 19 C 0.012 3.988 20 C -0.786 4.786 21 S 2.816 3.184 22 N -0.910 5.910 23 O -0.968 6.968 24 O -0.979 6.979 25 C 0.036 3.964 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.166 0.834 35 H 0.201 0.799 36 H 0.201 0.799 37 H 0.267 0.733 38 H 0.259 0.741 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.053 -13.320 -12.023 18.061 hybrid contribution 0.780 0.339 0.732 1.122 sum 2.833 -12.981 -11.291 17.436 Atomic orbital electron populations 1.21676 0.94278 1.02250 1.01947 1.21901 0.96855 0.97350 1.01318 1.21519 0.79642 0.96751 1.03742 1.52682 1.12233 1.85876 1.17575 1.19359 1.07233 1.33017 0.84634 0.88760 1.26102 0.97678 0.94149 1.02641 1.70075 1.31944 1.21059 1.29778 0.85163 0.78446 0.78585 0.77924 1.18036 1.21046 1.20104 1.04160 0.73271 0.74916 0.74219 1.93401 1.43417 1.78103 1.84088 1.93393 1.66419 1.74053 1.66639 1.31044 1.05284 1.26486 1.14478 1.21559 0.92615 0.94179 0.91353 1.21868 1.01860 0.94531 0.98352 1.21675 0.88517 0.99014 0.89596 1.30931 1.18304 1.06205 1.23187 1.00649 0.72569 0.72355 0.72861 1.52713 1.78461 1.34640 1.25214 1.93565 1.86323 1.30405 1.86470 1.93611 1.42490 1.76760 1.85069 1.20742 0.95213 0.92512 0.87956 0.91321 0.92665 0.92446 0.93228 0.92109 0.88256 0.92721 0.92082 0.83371 0.79939 0.79924 0.73295 0.74090 0.83537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.71 9.91 71.98 0.71 -3.99 16 2 C -0.13 -5.27 6.22 30.60 0.19 -5.08 16 3 C 0.11 5.12 5.29 86.38 0.46 5.57 16 4 N -0.85 -41.75 2.85 -343.45 -0.98 -42.73 16 5 C -0.31 -15.70 8.87 84.03 0.75 -14.95 16 6 H 0.09 4.60 7.94 -2.91 -0.02 4.58 16 7 C 0.00 -0.06 4.98 84.86 0.42 0.36 16 8 N -0.89 -47.77 11.27 21.65 0.24 -47.53 16 9 Si 0.97 40.05 29.62 68.60 2.03 42.09 16 10 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 11 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 12 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 13 S 2.63 121.20 5.65 -56.49 -0.32 120.88 16 14 O -1.00 -50.69 16.50 -128.00 -2.11 -52.80 16 15 O -1.02 -49.65 15.83 -128.00 -2.03 -51.68 16 16 C -0.68 -24.51 5.97 22.27 0.13 -24.38 16 17 C 0.02 0.66 9.52 22.27 0.21 0.87 16 18 C -0.15 -3.06 10.05 22.27 0.22 -2.84 16 19 C 0.03 0.61 9.52 22.27 0.21 0.82 16 20 C -0.70 -17.01 5.97 22.27 0.13 -16.88 16 21 S 2.73 57.63 6.28 -56.49 -0.35 57.28 16 22 N -1.23 -14.30 9.52 37.02 0.35 -13.95 16 23 O -0.98 -23.42 17.28 -128.00 -2.21 -25.63 16 24 O -0.99 -29.20 17.28 -128.00 -2.21 -31.41 16 25 C 0.06 1.79 8.00 22.27 0.18 1.97 16 26 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.05 1.85 7.11 -2.39 -0.02 1.83 16 30 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.10 5.04 5.31 -2.39 -0.01 5.02 16 32 H 0.05 2.53 6.90 -2.39 -0.02 2.51 16 33 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 34 H 0.15 4.33 7.62 -2.91 -0.02 4.31 16 35 H 0.18 2.23 8.06 -2.91 -0.02 2.21 16 36 H 0.18 2.26 7.62 -2.91 -0.02 2.24 16 37 H 0.43 2.94 8.96 -96.74 -0.87 2.07 16 38 H 0.43 3.58 8.96 -96.74 -0.87 2.71 16 39 H 0.15 4.80 7.18 -2.91 -0.02 4.78 16 Total: -1.00 -77.05 354.27 -4.58 -81.64 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -0.62 Total: 22.36 kcal Atomic # 6 Polarization: -62.14 SS G_CDS: 3.62 Total: -58.52 kcal Atomic # 7 Polarization: -103.83 SS G_CDS: -0.38 Total: -104.21 kcal Atomic # 8 Polarization: -152.95 SS G_CDS: -8.56 Total: -161.52 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.09 kcal Atomic # 16 Polarization: 178.83 SS G_CDS: -0.67 Total: 178.16 kcal Total: -77.05 -4.58 -81.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345525511.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.037 kcal (2) G-P(sol) polarization free energy of solvation -77.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds