Wall clock time and date at job start Wed Apr 1 2020 06:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34230 * 116.99823 * 2 1 4 4 O 1.20834 * 119.99734 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00234 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.46779 * 299.99897 * 5 3 2 7 7 N 1.46497 * 109.47294 * 179.97438 * 5 3 2 8 8 S 1.65596 * 120.00088 * 143.46047 * 7 5 3 9 9 O 1.42098 * 106.40635 * 177.94106 * 8 7 5 10 10 O 1.42093 * 106.40434 * 310.86716 * 8 7 5 11 11 N 1.65607 * 107.21827 * 64.40204 * 8 7 5 12 12 C 1.46498 * 120.00089 * 264.77808 * 11 8 7 13 13 C 1.46505 * 119.99571 * 84.77573 * 11 8 7 14 14 C 1.50706 * 109.46875 * 94.79264 * 13 11 8 15 15 H 1.07998 * 120.00118 * 4.79118 * 14 13 11 16 16 C 1.37876 * 119.99691 * 184.79908 * 14 13 11 17 17 N 1.31508 * 120.00384 * 5.22615 * 16 14 13 18 18 Si 1.86803 * 119.99696 * 185.23061 * 16 14 13 19 19 H 1.48499 * 109.47504 * 94.98090 * 18 16 14 20 20 H 1.48504 * 109.47084 * 214.98294 * 18 16 14 21 21 H 1.48505 * 109.46975 * 334.98061 * 18 16 14 22 22 C 1.50701 * 109.47082 * 59.99687 * 5 3 2 23 23 C 1.33389 * 125.20374 * 256.48398 * 22 5 3 24 24 C 1.38425 * 114.92307 * 180.29549 * 23 22 5 25 25 C 1.33388 * 114.91749 * 359.48227 * 24 23 22 26 26 S 1.75886 * 109.59599 * 0.48694 * 25 24 23 27 27 H 1.08994 * 109.47572 * 300.00025 * 1 2 3 28 28 H 1.08997 * 109.47286 * 60.00517 * 1 2 3 29 29 H 1.09006 * 109.47033 * 180.02562 * 1 2 3 30 30 H 0.97001 * 120.00232 * 323.45622 * 7 5 3 31 31 H 1.09001 * 109.47009 * 90.00190 * 12 11 8 32 32 H 1.09003 * 109.46566 * 210.00241 * 12 11 8 33 33 H 1.08993 * 109.47095 * 329.99514 * 12 11 8 34 34 H 1.08993 * 109.46938 * 214.78530 * 13 11 8 35 35 H 1.08993 * 109.47480 * 334.79257 * 13 11 8 36 36 H 0.96996 * 120.00384 * 180.02562 * 17 16 14 37 37 H 1.08001 * 122.53887 * 0.02562 * 23 22 5 38 38 H 1.08001 * 122.54194 * 179.72878 * 24 23 22 39 39 H 1.08002 * 125.20454 * 180.20984 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9563 0.7807 0.8892 7 7 3.9816 2.6799 -0.0011 8 16 5.3215 3.1475 0.8521 9 8 5.4838 4.5389 0.6138 10 8 5.1828 2.5928 2.1529 11 7 6.6279 2.3994 0.1618 12 6 7.1232 1.1351 0.7118 13 6 7.2882 3.0021 -0.9988 14 6 8.4572 3.8332 -0.5363 15 1 8.7327 3.8437 0.5079 16 6 9.1747 4.5803 -1.4462 17 7 8.7784 4.6497 -2.6982 18 14 10.7100 5.4939 -0.9005 19 1 11.9070 4.6595 -1.1763 20 1 10.8160 6.7735 -1.6467 21 1 10.6274 5.7752 0.5553 22 6 4.1046 0.5921 -1.2314 23 6 4.6653 -0.6180 -1.2562 24 6 5.0929 -1.0373 -2.5042 25 6 4.8696 -0.1722 -3.4947 26 16 4.0903 1.2689 -2.8547 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.4717 3.3362 -0.5012 31 1 6.6179 0.3030 0.2215 32 1 8.1970 1.0603 0.5402 33 1 6.9232 1.1017 1.7827 34 1 7.6428 2.2151 -1.6643 35 1 6.5796 3.6364 -1.5313 36 1 9.2834 5.1750 -3.3385 37 1 4.7810 -1.2230 -0.3691 38 1 5.5675 -1.9941 -2.6646 39 1 5.1317 -0.3303 -4.5304 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348114212.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:53:57 Heat of formation + Delta-G solvation = -110.757767 kcal Electronic energy + Delta-G solvation = -27625.976364 eV Core-core repulsion = 23595.305643 eV Total energy + Delta-G solvation = -4030.670721 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.77826 -38.03071 -36.89624 -36.66486 -35.49717 -35.23511 -35.08437 -32.42004 -30.29531 -28.29513 -27.75193 -26.21312 -25.07525 -23.50822 -22.29692 -21.34617 -19.81804 -19.00238 -18.07135 -17.75771 -17.26950 -17.02878 -16.56133 -16.43726 -16.12668 -15.50245 -15.25738 -14.77204 -14.30984 -13.81976 -13.69176 -13.48495 -13.34389 -12.91311 -12.78704 -12.64526 -12.38780 -12.26848 -12.14837 -12.00901 -11.72789 -11.61400 -11.46186 -11.16260 -11.07658 -11.02561 -10.91145 -10.70663 -10.65487 -10.51688 -10.06244 -9.83945 -9.71820 -8.72044 -8.42553 -8.35114 -8.06756 -6.04698 -4.07755 0.92300 1.06543 1.64435 1.93112 2.06832 2.41485 2.76919 3.32119 3.39309 3.42067 3.45766 4.03402 4.39331 4.46339 4.54486 4.75730 4.87610 4.92632 4.96543 5.10016 5.27015 5.30139 5.37587 5.52053 5.58983 5.71000 6.01047 6.04702 6.09215 6.25540 6.28011 6.45929 6.54851 6.93424 7.24825 7.40545 7.48280 7.61061 7.93340 8.22281 8.94239 9.56917 11.03760 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.014397 B = 0.004415 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.402948 B = 6340.497209 C = 7275.473260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.349 6.349 3 C 0.467 3.533 4 O -0.490 6.490 5 C 0.247 3.753 6 H 0.141 0.859 7 N -1.117 6.117 8 S 2.780 3.220 9 O -0.949 6.949 10 O -0.995 6.995 11 N -0.987 5.987 12 C 0.092 3.908 13 C 0.262 3.738 14 C -0.529 4.529 15 H 0.061 0.939 16 C 0.064 3.936 17 N -0.893 5.893 18 Si 0.895 3.105 19 H -0.281 1.281 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.216 4.216 23 C -0.102 4.102 24 C -0.138 4.138 25 C -0.202 4.202 26 S 0.144 5.856 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.422 0.578 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.032 0.968 35 H 0.040 0.960 36 H 0.263 0.737 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.463 -15.008 0.369 20.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.264 6.264 3 C 0.306 3.694 4 O -0.375 6.375 5 C 0.134 3.866 6 H 0.158 0.842 7 N -0.874 5.874 8 S 2.787 3.213 9 O -0.933 6.933 10 O -0.979 6.979 11 N -0.831 5.831 12 C -0.055 4.055 13 C 0.140 3.860 14 C -0.569 4.569 15 H 0.079 0.921 16 C -0.139 4.139 17 N -0.532 5.532 18 Si 0.723 3.277 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.336 4.336 23 C -0.134 4.134 24 C -0.169 4.169 25 C -0.339 4.339 26 S 0.409 5.591 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.257 0.743 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -14.063 -12.783 0.398 19.009 hybrid contribution 1.045 -0.678 0.110 1.250 sum -13.018 -13.461 0.508 18.733 Atomic orbital electron populations 1.23318 0.76027 1.03851 1.02719 1.86509 1.23514 1.32549 1.83826 1.23554 0.91396 0.81881 0.72560 1.90681 1.66267 1.36301 1.44300 1.18219 0.87668 0.83733 0.96973 0.84210 1.56523 1.47506 1.12982 1.70376 1.02146 0.72315 0.73733 0.73112 1.93677 1.84644 1.29624 1.85372 1.93526 1.86441 1.80594 1.37313 1.57543 1.44378 1.34612 1.46555 1.21432 1.01593 0.84659 0.97811 1.19035 0.92827 0.92726 0.81417 1.21508 1.13244 1.27278 0.94859 0.92114 1.24911 0.97976 0.96064 0.94929 1.69924 1.39189 1.41192 1.02889 0.86524 0.82996 0.79216 0.78946 1.20725 1.21121 1.19729 1.24438 1.11109 1.00014 0.98030 1.20043 0.99286 0.94928 0.99161 1.20061 1.03677 1.01476 0.91686 1.25747 1.06914 0.97475 1.03718 1.84505 1.57567 1.18640 0.98382 0.91726 0.91750 0.87868 0.74300 0.93993 0.90290 0.91596 0.95018 0.94167 0.92763 0.83867 0.84135 0.81807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.34 16 2 O -0.35 -3.88 10.48 -39.26 -0.41 -4.29 16 3 C 0.47 6.27 7.31 36.00 0.26 6.53 16 4 O -0.49 -7.60 15.76 -18.76 -0.30 -7.89 16 5 C 0.25 3.36 3.28 -70.24 -0.23 3.13 16 6 H 0.14 1.69 7.49 -51.93 -0.39 1.30 16 7 N -1.12 -18.06 5.11 -6.88 -0.04 -18.10 16 8 S 2.78 55.32 6.04 -107.50 -0.65 54.67 16 9 O -0.95 -23.05 17.31 -57.17 -0.99 -24.04 16 10 O -1.00 -20.15 16.03 -57.17 -0.92 -21.07 16 11 N -0.99 -19.76 3.23 -123.05 -0.40 -20.16 16 12 C 0.09 1.48 10.65 59.85 0.64 2.12 16 13 C 0.26 6.35 5.08 -5.19 -0.03 6.33 16 14 C -0.53 -14.64 9.38 -34.44 -0.32 -14.96 16 15 H 0.06 1.69 7.82 -52.49 -0.41 1.27 16 16 C 0.06 1.79 5.45 -17.82 -0.10 1.69 16 17 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 18 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 22 C -0.22 -2.80 5.34 -36.00 -0.19 -2.99 16 23 C -0.10 -1.13 8.81 -41.21 -0.36 -1.49 16 24 C -0.14 -1.48 10.18 -41.21 -0.42 -1.90 16 25 C -0.20 -2.33 11.23 29.04 0.33 -2.01 16 26 S 0.14 1.95 23.14 -107.50 -2.49 -0.54 16 27 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 28 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.42 6.62 8.26 -34.46 -0.28 6.33 16 31 H 0.04 0.56 6.87 -51.93 -0.36 0.20 16 32 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 33 H 0.07 1.01 7.00 -51.93 -0.36 0.64 16 34 H 0.03 0.78 8.11 -51.93 -0.42 0.36 16 35 H 0.04 1.05 7.75 -51.93 -0.40 0.65 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 39 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 366.77 15.07 5.53 5.53 Total: -1.00 -34.87 366.77 -9.02 -43.89 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -4.72 Total: 2.54 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 0.64 Total: -2.20 kcal Atomic # 7 Polarization: -63.63 SS G_CDS: 0.30 Total: -63.32 kcal Atomic # 8 Polarization: -54.67 SS G_CDS: -2.61 Total: -57.29 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 57.27 SS G_CDS: -3.14 Total: 54.13 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.87 -9.02 -43.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348114212.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.869 kcal (2) G-P(sol) polarization free energy of solvation -34.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds