Wall clock time and date at job start Wed Apr 1 2020 06:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34230 * 116.99823 * 2 1 4 4 O 1.20834 * 119.99734 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00234 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.46779 * 299.99897 * 5 3 2 7 7 N 1.46497 * 109.47294 * 179.97438 * 5 3 2 8 8 S 1.65596 * 120.00088 * 143.46047 * 7 5 3 9 9 O 1.42098 * 106.40635 * 177.94106 * 8 7 5 10 10 O 1.42093 * 106.40434 * 310.86716 * 8 7 5 11 11 N 1.65607 * 107.21827 * 64.40204 * 8 7 5 12 12 C 1.46498 * 120.00089 * 264.77808 * 11 8 7 13 13 C 1.46505 * 119.99571 * 84.77573 * 11 8 7 14 14 C 1.50706 * 109.46875 * 94.79264 * 13 11 8 15 15 H 1.07998 * 120.00118 * 4.79118 * 14 13 11 16 16 C 1.37876 * 119.99691 * 184.79908 * 14 13 11 17 17 N 1.31508 * 120.00384 * 5.22615 * 16 14 13 18 18 Si 1.86803 * 119.99696 * 185.23061 * 16 14 13 19 19 H 1.48499 * 109.47504 * 94.98090 * 18 16 14 20 20 H 1.48504 * 109.47084 * 214.98294 * 18 16 14 21 21 H 1.48505 * 109.46975 * 334.98061 * 18 16 14 22 22 C 1.50701 * 109.47082 * 59.99687 * 5 3 2 23 23 C 1.33389 * 125.20374 * 256.48398 * 22 5 3 24 24 C 1.38425 * 114.92307 * 180.29549 * 23 22 5 25 25 C 1.33388 * 114.91749 * 359.48227 * 24 23 22 26 26 S 1.75886 * 109.59599 * 0.48694 * 25 24 23 27 27 H 1.08994 * 109.47572 * 300.00025 * 1 2 3 28 28 H 1.08997 * 109.47286 * 60.00517 * 1 2 3 29 29 H 1.09006 * 109.47033 * 180.02562 * 1 2 3 30 30 H 0.97001 * 120.00232 * 323.45622 * 7 5 3 31 31 H 1.09001 * 109.47009 * 90.00190 * 12 11 8 32 32 H 1.09003 * 109.46566 * 210.00241 * 12 11 8 33 33 H 1.08993 * 109.47095 * 329.99514 * 12 11 8 34 34 H 1.08993 * 109.46938 * 214.78530 * 13 11 8 35 35 H 1.08993 * 109.47480 * 334.79257 * 13 11 8 36 36 H 0.96996 * 120.00384 * 180.02562 * 17 16 14 37 37 H 1.08001 * 122.53887 * 0.02562 * 23 22 5 38 38 H 1.08001 * 122.54194 * 179.72878 * 24 23 22 39 39 H 1.08002 * 125.20454 * 180.20984 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9563 0.7807 0.8892 7 7 3.9816 2.6799 -0.0011 8 16 5.3215 3.1475 0.8521 9 8 5.4838 4.5389 0.6138 10 8 5.1828 2.5928 2.1529 11 7 6.6279 2.3994 0.1618 12 6 7.1232 1.1351 0.7118 13 6 7.2882 3.0021 -0.9988 14 6 8.4572 3.8332 -0.5363 15 1 8.7327 3.8437 0.5079 16 6 9.1747 4.5803 -1.4462 17 7 8.7784 4.6497 -2.6982 18 14 10.7100 5.4939 -0.9005 19 1 11.9070 4.6595 -1.1763 20 1 10.8160 6.7735 -1.6467 21 1 10.6274 5.7752 0.5553 22 6 4.1046 0.5921 -1.2314 23 6 4.6653 -0.6180 -1.2562 24 6 5.0929 -1.0373 -2.5042 25 6 4.8696 -0.1722 -3.4947 26 16 4.0903 1.2689 -2.8547 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.4717 3.3362 -0.5012 31 1 6.6179 0.3030 0.2215 32 1 8.1970 1.0603 0.5402 33 1 6.9232 1.1017 1.7827 34 1 7.6428 2.2151 -1.6643 35 1 6.5796 3.6364 -1.5313 36 1 9.2834 5.1750 -3.3385 37 1 4.7810 -1.2230 -0.3691 38 1 5.5675 -1.9941 -2.6646 39 1 5.1317 -0.3303 -4.5304 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348114212.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:53:56 Heat of formation + Delta-G solvation = -136.202353 kcal Electronic energy + Delta-G solvation = -27627.079724 eV Core-core repulsion = 23595.305643 eV Total energy + Delta-G solvation = -4031.774081 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.78137 -38.97238 -38.34975 -37.84107 -37.18021 -36.94508 -36.24335 -34.46427 -31.36382 -29.61194 -29.07029 -27.13805 -26.74155 -24.42931 -24.18349 -22.35264 -21.01432 -20.06551 -19.39125 -18.90190 -18.73652 -18.43644 -18.07564 -17.76239 -17.39540 -16.97713 -16.40422 -16.24559 -15.69721 -15.15342 -14.96081 -14.69905 -14.53077 -14.14403 -13.98052 -13.86790 -13.73436 -13.46591 -13.35203 -13.30008 -13.18048 -13.03532 -12.98896 -12.93657 -12.83244 -12.46023 -12.35492 -12.01718 -11.93162 -11.85830 -11.71618 -11.59241 -11.08432 -10.54776 -9.76406 -9.64468 -9.34144 -8.16418 -6.26879 -0.50237 0.02436 0.68823 0.90929 1.16051 1.40345 1.42887 1.44048 1.53245 1.82184 2.10065 2.41985 2.53812 3.14320 3.35846 3.42723 3.54236 3.74718 4.06714 4.28901 4.29321 4.31380 4.33015 4.67786 4.71349 4.77953 4.80262 4.88080 5.14099 5.15590 5.21612 5.26224 5.38109 5.47429 5.62417 5.66846 5.74960 5.98971 6.15753 6.49515 6.81263 7.41310 8.90831 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.014397 B = 0.004415 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.402948 B = 6340.497209 C = 7275.473260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.344 6.344 3 C 0.471 3.529 4 O -0.519 6.519 5 C 0.241 3.759 6 H 0.160 0.840 7 N -1.111 6.111 8 S 2.799 3.201 9 O -1.001 7.001 10 O -0.998 6.998 11 N -0.990 5.990 12 C 0.084 3.916 13 C 0.283 3.717 14 C -0.549 4.549 15 H 0.053 0.947 16 C 0.014 3.986 17 N -0.921 5.921 18 Si 0.953 3.047 19 H -0.265 1.265 20 H -0.283 1.283 21 H -0.274 1.274 22 C -0.228 4.228 23 C -0.091 4.091 24 C -0.136 4.136 25 C -0.200 4.200 26 S 0.075 5.925 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.139 0.861 30 H 0.423 0.577 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.029 0.971 35 H 0.014 0.986 36 H 0.265 0.735 37 H 0.175 0.825 38 H 0.173 0.827 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.117 -17.644 0.980 22.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.259 6.259 3 C 0.312 3.688 4 O -0.407 6.407 5 C 0.129 3.871 6 H 0.177 0.823 7 N -0.871 5.871 8 S 2.807 3.193 9 O -0.985 6.985 10 O -0.982 6.982 11 N -0.833 5.833 12 C -0.061 4.061 13 C 0.159 3.841 14 C -0.588 4.588 15 H 0.072 0.928 16 C -0.186 4.186 17 N -0.561 5.561 18 Si 0.778 3.222 19 H -0.190 1.190 20 H -0.209 1.209 21 H -0.199 1.199 22 C -0.347 4.347 23 C -0.123 4.123 24 C -0.166 4.166 25 C -0.336 4.336 26 S 0.339 5.661 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.157 0.843 30 H 0.258 0.742 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.047 0.953 35 H 0.032 0.968 36 H 0.074 0.926 37 H 0.193 0.807 38 H 0.190 0.810 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -13.717 -15.468 1.027 20.699 hybrid contribution 0.831 -0.008 -0.080 0.834 sum -12.886 -15.476 0.947 20.161 Atomic orbital electron populations 1.23663 0.74137 1.06201 1.02668 1.86491 1.25263 1.30986 1.83142 1.23481 0.91292 0.82163 0.71875 1.90672 1.66827 1.37343 1.45850 1.18457 0.88250 0.82083 0.98279 0.82336 1.56098 1.46387 1.14656 1.69933 1.01296 0.72541 0.72496 0.72994 1.93605 1.85640 1.33105 1.86118 1.93512 1.86682 1.80364 1.37625 1.57356 1.44684 1.35825 1.45441 1.21700 1.01763 0.83874 0.98762 1.18519 0.91329 0.91902 0.82300 1.21879 1.14450 1.27892 0.94591 0.92829 1.25693 1.00790 0.96998 0.95080 1.70020 1.40340 1.41981 1.03765 0.85622 0.80052 0.78220 0.78263 1.19040 1.20901 1.19866 1.24320 1.12881 1.00777 0.96749 1.20477 0.97150 0.94126 1.00528 1.20453 1.02785 1.02301 0.91029 1.26014 1.06519 0.96155 1.04946 1.84775 1.59459 1.21356 1.00514 0.91673 0.92018 0.84298 0.74172 0.90584 0.90701 0.90419 0.95344 0.96780 0.92558 0.80744 0.81018 0.80138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.34 -7.00 10.48 -51.42 -0.54 -7.54 16 3 C 0.47 12.25 7.31 71.23 0.52 12.77 16 4 O -0.52 -16.14 15.76 21.94 0.35 -15.79 16 5 C 0.24 6.27 3.28 43.50 0.14 6.41 16 6 H 0.16 3.45 7.49 -2.39 -0.02 3.43 16 7 N -1.11 -36.18 5.11 -175.69 -0.90 -37.08 16 8 S 2.80 111.83 6.04 -56.49 -0.34 111.49 16 9 O -1.00 -50.16 17.31 -128.00 -2.22 -52.38 16 10 O -1.00 -39.46 16.03 -128.00 -2.05 -41.51 16 11 N -0.99 -39.20 3.23 -543.23 -1.75 -40.96 16 12 C 0.08 2.55 10.65 127.77 1.36 3.91 16 13 C 0.28 13.92 5.08 85.63 0.44 14.36 16 14 C -0.55 -30.64 9.38 25.60 0.24 -30.40 16 15 H 0.05 2.99 7.82 -2.91 -0.02 2.97 16 16 C 0.01 0.79 5.45 84.66 0.46 1.25 16 17 N -0.92 -53.85 13.29 21.45 0.28 -53.57 16 18 Si 0.95 44.54 29.54 68.60 2.03 46.57 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 21 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 22 C -0.23 -5.54 5.34 24.59 0.13 -5.41 16 23 C -0.09 -1.70 8.81 21.22 0.19 -1.52 16 24 C -0.14 -2.44 10.18 21.22 0.22 -2.22 16 25 C -0.20 -4.28 11.23 66.72 0.75 -3.53 16 26 S 0.07 2.02 23.14 -56.49 -1.31 0.72 16 27 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 28 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 29 H 0.14 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.42 13.84 8.26 -96.75 -0.80 13.04 16 31 H 0.08 1.76 6.87 -2.39 -0.02 1.75 16 32 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 33 H 0.08 2.18 7.00 -2.39 -0.02 2.17 16 34 H 0.03 1.41 8.11 -2.39 -0.02 1.39 16 35 H 0.01 0.77 7.75 -2.39 -0.02 0.75 16 36 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 37 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 38 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.18 3.11 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -76.02 366.77 -0.52 -76.54 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.29 Total: 16.32 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: 5.64 Total: -2.81 kcal Atomic # 7 Polarization: -129.23 SS G_CDS: -2.37 Total: -131.60 kcal Atomic # 8 Polarization: -112.76 SS G_CDS: -4.46 Total: -117.22 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: 113.86 SS G_CDS: -1.65 Total: 112.21 kcal Total: -76.02 -0.52 -76.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348114212.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.666 kcal (2) G-P(sol) polarization free energy of solvation -76.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds