Wall clock time and date at job start Wed Apr 1 2020 06:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46991 * 2 1 4 4 N 1.46504 * 109.46837 * 184.20818 * 3 2 1 5 5 C 1.36943 * 119.99793 * 285.80972 * 4 3 2 6 6 H 1.07995 * 120.00013 * 306.46767 * 5 4 3 7 7 C 1.38808 * 119.99626 * 126.46563 * 5 4 3 8 8 N 1.31622 * 119.99764 * 161.64090 * 7 5 4 9 9 Si 1.86802 * 120.00217 * 341.63622 * 7 5 4 10 10 H 1.48498 * 109.47269 * 95.74320 * 9 7 5 11 11 H 1.48498 * 109.47064 * 215.74251 * 9 7 5 12 12 H 1.48500 * 109.47203 * 335.74464 * 9 7 5 13 13 S 1.65597 * 120.00164 * 105.81685 * 4 3 2 14 14 O 1.42094 * 106.40280 * 329.98837 * 13 4 3 15 15 O 1.42099 * 106.40241 * 197.07173 * 13 4 3 16 16 C 1.76200 * 107.22180 * 83.52949 * 13 4 3 17 17 C 1.38267 * 119.99810 * 345.39916 * 16 13 4 18 18 C 1.38210 * 119.99797 * 179.97438 * 17 16 13 19 19 C 1.38257 * 120.00110 * 359.80322 * 18 17 16 20 20 C 1.38212 * 120.00092 * 0.42892 * 19 18 17 21 21 C 1.38207 * 120.00113 * 165.37602 * 16 13 4 22 22 S 1.76200 * 120.00205 * 359.97438 * 21 16 13 23 23 N 1.65600 * 107.21858 * 292.11254 * 22 21 16 24 24 O 1.42101 * 106.40242 * 45.65371 * 22 21 16 25 25 O 1.42097 * 106.40200 * 178.57152 * 22 21 16 26 26 H 1.09001 * 109.47213 * 299.99982 * 1 2 3 27 27 H 1.08998 * 109.46891 * 60.00626 * 1 2 3 28 28 H 1.09001 * 109.47113 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47608 * 239.99705 * 2 1 3 30 30 H 1.09005 * 109.47221 * 119.99566 * 2 1 3 31 31 H 1.08991 * 109.47227 * 64.20585 * 3 2 1 32 32 H 1.08995 * 109.46850 * 304.20256 * 3 2 1 33 33 H 0.97001 * 119.99654 * 179.97438 * 8 7 5 34 34 H 1.07998 * 119.99735 * 0.02562 * 17 16 13 35 35 H 1.08002 * 119.99486 * 180.02562 * 18 17 16 36 36 H 1.08001 * 120.00149 * 180.23659 * 19 18 17 37 37 H 1.07999 * 120.00430 * 179.80032 * 20 19 18 38 38 H 0.97005 * 119.99989 * 149.99398 * 23 22 21 39 39 H 0.96993 * 120.00002 * 330.00402 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5015 1.4437 -0.1014 5 6 4.2631 1.0933 0.9814 6 1 4.1165 1.5910 1.9286 7 6 5.2237 0.0985 0.8615 8 7 6.1858 0.0016 1.7544 9 14 5.1509 -1.1029 -0.5671 10 1 6.0389 -0.6285 -1.6587 11 1 5.6001 -2.4426 -0.1106 12 1 3.7557 -1.1926 -1.0679 13 16 4.2324 1.8689 -1.5252 14 8 3.3372 1.4946 -2.5632 15 8 5.5706 1.3977 -1.4456 16 6 4.3254 3.6281 -1.5588 17 6 3.5757 4.3771 -0.6707 18 6 3.6491 5.7570 -0.6967 19 6 4.4753 6.3883 -1.6080 20 6 5.2211 5.6398 -2.4989 21 6 5.1482 4.2593 -2.4725 22 16 6.1046 3.3048 -3.6033 23 7 7.2500 2.4997 -2.7189 24 8 5.2330 2.3130 -4.1286 25 8 6.8065 4.2332 -4.4185 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 1.7395 1.9341 0.9252 32 1 1.6164 1.9775 -0.8499 33 1 6.8569 -0.6938 1.6708 34 1 2.9334 3.8838 0.0438 35 1 3.0638 6.3420 -0.0028 36 1 4.5355 7.4665 -1.6258 37 1 5.8640 6.1329 -3.2129 38 1 7.5785 1.6382 -3.0203 39 1 7.5923 2.8895 -1.8993 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349455894.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:29:54 Heat of formation + Delta-G solvation = -86.764163 kcal Electronic energy + Delta-G solvation = -28914.744323 eV Core-core repulsion = 24885.114043 eV Total energy + Delta-G solvation = -4029.630280 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -38.95878 -37.00527 -36.49937 -35.99953 -35.60180 -34.56445 -33.08179 -32.58157 -31.62646 -31.28457 -30.97548 -26.24775 -23.86866 -23.12814 -23.01554 -20.83703 -19.45816 -19.07876 -18.61431 -17.55089 -16.99541 -16.47118 -16.27151 -15.73804 -15.31717 -15.28387 -14.79084 -14.61240 -14.38768 -14.15807 -14.09283 -13.47382 -13.09972 -12.95283 -12.66298 -12.58119 -11.97606 -11.92202 -11.87211 -11.80991 -11.70530 -11.60090 -11.39650 -11.16095 -10.98380 -10.79683 -10.73846 -10.58285 -10.26890 -9.98551 -9.91276 -9.78934 -9.39318 -9.38515 -9.08428 -8.78428 -8.09892 -6.72954 -4.45041 0.56051 0.79675 1.20555 1.43682 3.25590 3.30090 3.36863 3.48896 3.51468 3.85542 3.95161 4.25252 4.59354 4.64642 4.76297 4.90129 4.97065 5.16397 5.42363 5.49975 5.55753 5.67603 5.75140 5.82062 5.83592 5.91152 6.00305 6.14953 6.16783 6.25693 6.29353 6.38779 6.62399 6.66976 6.85498 6.86211 7.02514 7.50183 7.64093 7.95188 8.73730 8.87887 10.26963 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.012651 B = 0.006744 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.753446 B = 4150.989988 C = 4957.386371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.140 4.140 3 C 0.131 3.869 4 N -0.829 5.829 5 C -0.251 4.251 6 H 0.098 0.902 7 C 0.097 3.903 8 N -0.810 5.810 9 Si 0.845 3.155 10 H -0.223 1.223 11 H -0.287 1.287 12 H -0.251 1.251 13 S 2.470 3.530 14 O -0.959 6.959 15 O -0.942 6.942 16 C -0.545 4.545 17 C -0.056 4.056 18 C -0.083 4.083 19 C -0.117 4.117 20 C -0.042 4.042 21 C -0.604 4.604 22 S 2.670 3.330 23 N -1.209 6.209 24 O -0.949 6.949 25 O -0.969 6.969 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.285 0.715 34 H 0.141 0.859 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.144 0.856 38 H 0.423 0.577 39 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.398 7.427 -0.739 8.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C 0.005 3.995 4 N -0.655 5.655 5 C -0.403 4.403 6 H 0.115 0.885 7 C -0.122 4.122 8 N -0.445 5.445 9 Si 0.670 3.330 10 H -0.147 1.147 11 H -0.215 1.215 12 H -0.175 1.175 13 S 2.570 3.430 14 O -0.948 6.948 15 O -0.930 6.930 16 C -0.620 4.620 17 C -0.076 4.076 18 C -0.102 4.102 19 C -0.136 4.136 20 C -0.062 4.062 21 C -0.692 4.692 22 S 2.757 3.243 23 N -0.886 5.886 24 O -0.938 6.938 25 O -0.958 6.958 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.159 0.841 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.162 0.838 38 H 0.254 0.746 39 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -3.243 7.140 -2.693 8.291 hybrid contribution 0.157 0.406 0.629 0.765 sum -3.086 7.546 -2.065 8.410 Atomic orbital electron populations 1.21733 0.96256 1.01296 1.01340 1.21942 0.94561 0.97866 1.03533 1.21312 0.80175 0.97128 1.00933 1.53230 1.10494 1.71331 1.30398 1.18967 1.15652 1.15768 0.89904 0.88488 1.25865 0.93596 0.96149 0.96596 1.69768 1.09528 1.30701 1.34483 0.87342 0.81877 0.79445 0.84301 1.14658 1.21493 1.17511 1.13979 0.76489 0.75028 0.77479 1.93468 1.63896 1.80433 1.57018 1.93518 1.36486 1.76796 1.86244 1.32507 0.98852 1.32695 0.97954 1.21043 0.96498 0.93964 0.96081 1.21601 0.96481 0.95110 0.96959 1.21375 0.96538 1.00100 0.95545 1.21079 0.96383 0.91919 0.96812 1.30484 1.14713 1.07648 1.16311 1.02468 0.74245 0.73960 0.73634 1.52505 1.59492 1.35464 1.41149 1.93750 1.65177 1.57599 1.77287 1.93573 1.73100 1.64709 1.64445 0.92892 0.92940 0.92982 0.91419 0.90639 0.91727 0.91759 0.90450 0.84104 0.84879 0.84908 0.83792 0.74559 0.75286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.14 -2.48 5.89 -26.73 -0.16 -2.63 16 3 C 0.13 2.39 4.40 -4.04 -0.02 2.37 16 4 N -0.83 -18.13 1.43 -59.91 -0.09 -18.22 16 5 C -0.25 -5.90 9.43 -15.06 -0.14 -6.04 16 6 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 7 C 0.10 2.42 4.71 -17.43 -0.08 2.34 16 8 N -0.81 -20.61 13.97 55.49 0.78 -19.83 16 9 Si 0.85 20.49 24.87 -169.99 -4.23 16.26 16 10 H -0.22 -5.53 6.03 56.52 0.34 -5.19 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.25 -6.03 5.44 56.52 0.31 -5.72 16 13 S 2.47 58.53 2.63 -107.50 -0.28 58.25 16 14 O -0.96 -25.28 15.56 -65.63 -1.02 -26.30 16 15 O -0.94 -22.80 8.31 -61.67 -0.51 -23.31 16 16 C -0.54 -11.17 5.82 -39.58 -0.23 -11.40 16 17 C -0.06 -0.97 9.56 -39.58 -0.38 -1.35 16 18 C -0.08 -1.15 10.05 -39.58 -0.40 -1.54 16 19 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 20 C -0.04 -0.67 9.55 -39.58 -0.38 -1.04 16 21 C -0.60 -11.58 5.91 -39.58 -0.23 -11.82 16 22 S 2.67 52.27 5.46 -107.50 -0.59 51.69 16 23 N -1.21 -20.81 6.66 60.35 0.40 -20.41 16 24 O -0.95 -22.27 14.86 -67.50 -1.00 -23.27 16 25 O -0.97 -18.82 16.97 -57.17 -0.97 -19.79 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.36 6.68 -51.93 -0.35 1.01 16 30 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.06 1.12 7.44 -51.93 -0.39 0.73 16 33 H 0.29 6.82 8.31 -40.82 -0.34 6.48 16 34 H 0.14 2.18 6.38 -52.49 -0.33 1.85 16 35 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.14 1.95 7.33 -52.49 -0.38 1.56 16 38 H 0.42 6.77 8.96 -34.47 -0.31 6.46 16 39 H 0.42 6.37 8.96 -34.47 -0.31 6.07 16 LS Contribution 333.48 15.07 5.03 5.03 Total: -1.00 -32.69 333.48 -9.28 -41.97 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -4.74 Total: 12.69 kcal Atomic # 6 Polarization: -32.69 SS G_CDS: -2.05 Total: -34.73 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: 1.09 Total: -58.46 kcal Atomic # 8 Polarization: -89.18 SS G_CDS: -3.51 Total: -92.69 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.23 Total: 16.26 kcal Atomic # 16 Polarization: 110.81 SS G_CDS: -0.87 Total: 109.94 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.69 -9.28 -41.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349455894.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.799 kcal (2) G-P(sol) polarization free energy of solvation -32.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds