Wall clock time and date at job start Wed Apr 1 2020 06:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46991 * 2 1 4 4 N 1.46504 * 109.46837 * 184.20818 * 3 2 1 5 5 C 1.36943 * 119.99793 * 285.80972 * 4 3 2 6 6 H 1.07995 * 120.00013 * 306.46767 * 5 4 3 7 7 C 1.38808 * 119.99626 * 126.46563 * 5 4 3 8 8 N 1.31622 * 119.99764 * 161.64090 * 7 5 4 9 9 Si 1.86802 * 120.00217 * 341.63622 * 7 5 4 10 10 H 1.48498 * 109.47269 * 95.74320 * 9 7 5 11 11 H 1.48498 * 109.47064 * 215.74251 * 9 7 5 12 12 H 1.48500 * 109.47203 * 335.74464 * 9 7 5 13 13 S 1.65597 * 120.00164 * 105.81685 * 4 3 2 14 14 O 1.42094 * 106.40280 * 329.98837 * 13 4 3 15 15 O 1.42099 * 106.40241 * 197.07173 * 13 4 3 16 16 C 1.76200 * 107.22180 * 83.52949 * 13 4 3 17 17 C 1.38267 * 119.99810 * 345.39916 * 16 13 4 18 18 C 1.38210 * 119.99797 * 179.97438 * 17 16 13 19 19 C 1.38257 * 120.00110 * 359.80322 * 18 17 16 20 20 C 1.38212 * 120.00092 * 0.42892 * 19 18 17 21 21 C 1.38207 * 120.00113 * 165.37602 * 16 13 4 22 22 S 1.76200 * 120.00205 * 359.97438 * 21 16 13 23 23 N 1.65600 * 107.21858 * 292.11254 * 22 21 16 24 24 O 1.42101 * 106.40242 * 45.65371 * 22 21 16 25 25 O 1.42097 * 106.40200 * 178.57152 * 22 21 16 26 26 H 1.09001 * 109.47213 * 299.99982 * 1 2 3 27 27 H 1.08998 * 109.46891 * 60.00626 * 1 2 3 28 28 H 1.09001 * 109.47113 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47608 * 239.99705 * 2 1 3 30 30 H 1.09005 * 109.47221 * 119.99566 * 2 1 3 31 31 H 1.08991 * 109.47227 * 64.20585 * 3 2 1 32 32 H 1.08995 * 109.46850 * 304.20256 * 3 2 1 33 33 H 0.97001 * 119.99654 * 179.97438 * 8 7 5 34 34 H 1.07998 * 119.99735 * 0.02562 * 17 16 13 35 35 H 1.08002 * 119.99486 * 180.02562 * 18 17 16 36 36 H 1.08001 * 120.00149 * 180.23659 * 19 18 17 37 37 H 1.07999 * 120.00430 * 179.80032 * 20 19 18 38 38 H 0.97005 * 119.99989 * 149.99398 * 23 22 21 39 39 H 0.96993 * 120.00002 * 330.00402 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5015 1.4437 -0.1014 5 6 4.2631 1.0933 0.9814 6 1 4.1165 1.5910 1.9286 7 6 5.2237 0.0985 0.8615 8 7 6.1858 0.0016 1.7544 9 14 5.1509 -1.1029 -0.5671 10 1 6.0389 -0.6285 -1.6587 11 1 5.6001 -2.4426 -0.1106 12 1 3.7557 -1.1926 -1.0679 13 16 4.2324 1.8689 -1.5252 14 8 3.3372 1.4946 -2.5632 15 8 5.5706 1.3977 -1.4456 16 6 4.3254 3.6281 -1.5588 17 6 3.5757 4.3771 -0.6707 18 6 3.6491 5.7570 -0.6967 19 6 4.4753 6.3883 -1.6080 20 6 5.2211 5.6398 -2.4989 21 6 5.1482 4.2593 -2.4725 22 16 6.1046 3.3048 -3.6033 23 7 7.2500 2.4997 -2.7189 24 8 5.2330 2.3130 -4.1286 25 8 6.8065 4.2332 -4.4185 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 1.7395 1.9341 0.9252 32 1 1.6164 1.9775 -0.8499 33 1 6.8569 -0.6938 1.6708 34 1 2.9334 3.8838 0.0438 35 1 3.0638 6.3420 -0.0028 36 1 4.5355 7.4665 -1.6258 37 1 5.8640 6.1329 -3.2129 38 1 7.5785 1.6382 -3.0203 39 1 7.5923 2.8895 -1.8993 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349455894.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:29:52 Heat of formation + Delta-G solvation = -112.847505 kcal Electronic energy + Delta-G solvation = -28915.875382 eV Core-core repulsion = 24885.114043 eV Total energy + Delta-G solvation = -4030.761338 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -40.20362 -38.61676 -38.11191 -37.89494 -37.21230 -36.47229 -34.74105 -34.04001 -33.17293 -32.55506 -32.28208 -27.78878 -25.40022 -24.51622 -24.30407 -22.26885 -21.05775 -20.77590 -20.14109 -19.12463 -18.50810 -18.02896 -17.88446 -17.29995 -17.04252 -16.78028 -16.31557 -16.13596 -15.77521 -15.67312 -15.52444 -15.13185 -14.77995 -14.30678 -14.14682 -13.89219 -13.53075 -13.49333 -13.43653 -13.37948 -13.32357 -13.21553 -13.02768 -12.74354 -12.55819 -12.43554 -12.27271 -12.13209 -11.95159 -11.69837 -11.43727 -11.35665 -11.03595 -10.67889 -10.59987 -10.36748 -9.82031 -8.63717 -6.32493 -0.88454 -0.57661 -0.32526 -0.03222 1.28468 1.40471 1.54591 1.89105 2.16375 2.16622 2.34421 2.46125 2.84972 2.96337 3.17496 3.67972 3.87701 3.92609 4.10912 4.13434 4.18934 4.28034 4.48632 4.50564 4.61075 4.65172 4.76729 4.84830 4.98837 5.01789 5.12687 5.19710 5.28295 5.29233 5.42881 5.55444 5.70483 5.80710 6.08853 6.32087 6.88269 7.10035 8.40666 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.012651 B = 0.006744 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.753446 B = 4150.989988 C = 4957.386371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.143 4.143 3 C 0.119 3.881 4 N -0.837 5.837 5 C -0.252 4.252 6 H 0.099 0.901 7 C 0.081 3.919 8 N -0.840 5.840 9 Si 0.847 3.153 10 H -0.240 1.240 11 H -0.279 1.279 12 H -0.256 1.256 13 S 2.486 3.514 14 O -0.997 6.997 15 O -0.959 6.959 16 C -0.583 4.583 17 C -0.067 4.067 18 C -0.070 4.070 19 C -0.097 4.097 20 C -0.047 4.047 21 C -0.623 4.623 22 S 2.673 3.327 23 N -1.204 6.204 24 O -0.996 6.996 25 O -0.973 6.973 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.032 0.968 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.287 0.713 34 H 0.153 0.847 35 H 0.185 0.815 36 H 0.187 0.813 37 H 0.166 0.834 38 H 0.426 0.574 39 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.840 11.071 0.376 12.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.183 4.183 3 C -0.006 4.006 4 N -0.664 5.664 5 C -0.400 4.400 6 H 0.117 0.883 7 C -0.135 4.135 8 N -0.477 5.477 9 Si 0.673 3.327 10 H -0.165 1.165 11 H -0.206 1.206 12 H -0.180 1.180 13 S 2.590 3.410 14 O -0.986 6.986 15 O -0.947 6.947 16 C -0.665 4.665 17 C -0.086 4.086 18 C -0.088 4.088 19 C -0.116 4.116 20 C -0.067 4.067 21 C -0.713 4.713 22 S 2.762 3.238 23 N -0.883 5.883 24 O -0.985 6.985 25 O -0.962 6.962 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.119 0.881 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.171 0.829 35 H 0.202 0.798 36 H 0.204 0.796 37 H 0.183 0.817 38 H 0.258 0.742 39 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -4.673 10.671 -1.538 11.751 hybrid contribution 0.536 -0.421 0.179 0.705 sum -4.136 10.250 -1.359 11.136 Atomic orbital electron populations 1.21697 0.92875 1.02560 1.02793 1.21968 0.97588 0.97248 1.01506 1.21679 0.78095 0.97859 1.02988 1.53128 1.11852 1.72393 1.29021 1.18861 1.15508 1.15401 0.90257 0.88313 1.26033 0.94244 0.96725 0.96454 1.69766 1.10604 1.31935 1.35380 0.87294 0.81248 0.80132 0.83998 1.16461 1.20599 1.17979 1.12102 0.75885 0.76047 0.76941 1.93429 1.64974 1.82053 1.58140 1.93497 1.36851 1.78000 1.86400 1.31749 1.02798 1.30430 1.01497 1.21415 0.95947 0.95930 0.95351 1.22200 0.95856 0.93693 0.97098 1.22060 0.93818 1.02613 0.93087 1.21536 0.96908 0.90519 0.97762 1.30228 1.15351 1.09252 1.16443 1.02056 0.74044 0.73658 0.73992 1.52357 1.58849 1.35655 1.41460 1.93694 1.66551 1.59484 1.78820 1.93556 1.73041 1.64421 1.65194 0.90304 0.92551 0.91932 0.94930 0.91222 0.88098 0.91148 0.90279 0.82935 0.79792 0.79573 0.81694 0.74166 0.74238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 9.91 71.98 0.71 -2.89 16 2 C -0.14 -5.07 5.89 30.59 0.18 -4.89 16 3 C 0.12 4.22 4.40 86.38 0.38 4.59 16 4 N -0.84 -36.56 1.43 -343.46 -0.49 -37.05 16 5 C -0.25 -11.86 9.43 84.03 0.79 -11.07 16 6 H 0.10 4.60 8.06 -2.91 -0.02 4.58 16 7 C 0.08 4.15 4.71 84.86 0.40 4.55 16 8 N -0.84 -43.59 13.97 21.65 0.30 -43.29 16 9 Si 0.85 42.58 24.87 68.60 1.71 44.29 16 10 H -0.24 -12.56 6.03 99.48 0.60 -11.96 16 11 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 12 H -0.26 -12.90 5.44 99.48 0.54 -12.36 16 13 S 2.49 119.54 2.63 -56.49 -0.15 119.39 16 14 O -1.00 -54.21 15.56 -119.91 -1.87 -56.08 16 15 O -0.96 -47.81 8.31 -123.70 -1.03 -48.84 16 16 C -0.58 -23.23 5.82 22.27 0.13 -23.10 16 17 C -0.07 -2.09 9.56 22.27 0.21 -1.87 16 18 C -0.07 -1.53 10.05 22.27 0.22 -1.30 16 19 C -0.10 -2.01 10.05 22.27 0.22 -1.78 16 20 C -0.05 -1.32 9.55 22.27 0.21 -1.11 16 21 C -0.62 -23.02 5.91 22.27 0.13 -22.89 16 22 S 2.67 105.78 5.46 -56.49 -0.31 105.47 16 23 N -1.20 -42.49 6.66 37.02 0.25 -42.24 16 24 O -1.00 -48.60 14.86 -118.13 -1.76 -50.36 16 25 O -0.97 -37.39 16.97 -128.00 -2.17 -39.56 16 26 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.06 1.45 8.14 -2.39 -0.02 1.44 16 29 H 0.03 1.35 6.68 -2.38 -0.02 1.33 16 30 H 0.07 2.49 8.10 -2.38 -0.02 2.47 16 31 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.07 2.38 7.44 -2.39 -0.02 2.37 16 33 H 0.29 14.11 8.31 -92.71 -0.77 13.34 16 34 H 0.15 4.24 6.38 -2.91 -0.02 4.23 16 35 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 36 H 0.19 1.92 8.06 -2.91 -0.02 1.90 16 37 H 0.17 3.83 7.33 -2.91 -0.02 3.81 16 38 H 0.43 14.32 8.96 -96.74 -0.87 13.45 16 39 H 0.43 13.23 8.96 -96.75 -0.87 12.36 16 Total: -1.00 -75.03 333.48 -2.81 -77.85 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: -0.90 Total: 32.17 kcal Atomic # 6 Polarization: -65.35 SS G_CDS: 3.60 Total: -61.75 kcal Atomic # 7 Polarization: -122.64 SS G_CDS: 0.06 Total: -122.58 kcal Atomic # 8 Polarization: -188.02 SS G_CDS: -6.82 Total: -194.84 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.71 Total: 44.29 kcal Atomic # 16 Polarization: 225.32 SS G_CDS: -0.46 Total: 224.86 kcal Total: -75.03 -2.81 -77.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349455894.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.000 kcal (2) G-P(sol) polarization free energy of solvation -75.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds