Wall clock time and date at job start Wed Apr 1 2020 04:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34774 * 120.00271 * 2 1 4 4 O 1.21591 * 119.99884 * 359.97438 * 3 2 1 5 5 C 1.47529 * 120.00273 * 180.02562 * 3 2 1 6 6 C 1.39712 * 120.18605 * 359.97364 * 5 3 2 7 7 C 1.37897 * 119.89788 * 180.02562 * 6 5 3 8 8 Cl 1.73592 * 119.86419 * 180.02562 * 7 6 5 9 9 C 1.38643 * 120.26963 * 359.97438 * 7 6 5 10 10 C 1.38053 * 120.37928 * 0.02562 * 9 7 6 11 11 S 1.76206 * 119.94978 * 179.97438 * 10 9 7 12 12 O 1.42095 * 106.40048 * 357.43667 * 11 10 9 13 13 O 1.42094 * 106.40255 * 130.36419 * 11 10 9 14 14 N 1.65606 * 107.21417 * 243.90109 * 11 10 9 15 15 C 1.36934 * 119.99848 * 63.67095 * 14 11 10 16 16 H 1.07997 * 120.00208 * 5.11469 * 15 14 11 17 17 C 1.38813 * 119.99990 * 185.10990 * 15 14 11 18 18 N 1.31622 * 119.99710 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00209 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47301 * 60.00484 * 19 17 15 21 21 H 1.48510 * 109.47165 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47305 * 300.00093 * 19 17 15 23 23 C 1.38695 * 120.09797 * 359.97438 * 10 9 7 24 24 O 1.35677 * 120.13430 * 180.02562 * 23 10 9 25 25 C 1.42902 * 117.00341 * 95.02769 * 24 23 10 26 26 H 1.09003 * 109.47144 * 60.00002 * 1 2 3 27 27 H 1.09000 * 109.47389 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47114 * 300.00094 * 1 2 3 29 29 H 0.96999 * 119.99920 * 179.97438 * 2 1 3 30 30 H 1.08006 * 120.05360 * 0.02562 * 6 5 3 31 31 H 1.08000 * 119.81172 * 180.27890 * 9 7 6 32 32 H 0.96997 * 119.99597 * 243.66846 * 14 11 10 33 33 H 0.97004 * 120.00122 * 180.02562 * 18 17 15 34 34 H 1.08997 * 109.46748 * 185.59402 * 25 24 23 35 35 H 1.08995 * 109.47025 * 305.59450 * 25 24 23 36 36 H 1.09004 * 109.46913 * 65.59881 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5310 2.2202 -0.0005 5 6 3.6142 1.1671 -0.0006 6 6 4.3167 -0.0405 -0.0006 7 6 5.6956 -0.0336 -0.0006 8 17 6.5676 -1.5346 -0.0012 9 6 6.3884 1.1673 -0.0011 10 6 5.7057 2.3672 -0.0011 11 16 6.5977 3.8868 -0.0011 12 8 7.9752 3.5435 0.0598 13 8 6.0394 4.6798 -1.0398 14 7 6.2456 4.6618 1.4194 15 6 6.6098 4.1004 2.6141 16 1 7.1984 3.1950 2.6281 17 6 6.2227 4.6951 3.8071 18 7 5.5051 5.7983 3.7900 19 14 6.7201 3.9297 5.4368 20 1 8.2015 3.8762 5.5270 21 1 6.1852 4.7504 6.5530 22 1 6.1687 2.5538 5.5264 23 6 4.3188 2.3783 -0.0011 24 8 3.6471 3.5571 -0.0017 25 6 3.2289 4.0651 -1.2702 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.9499 -0.8400 0.0004 30 1 3.7806 -0.9781 -0.0005 31 1 7.4684 1.1641 -0.0057 32 1 5.7814 5.5134 1.4051 33 1 5.2348 6.2142 4.6237 34 1 2.7935 5.0557 -1.1393 35 1 4.0890 4.1313 -1.9365 36 1 2.4852 3.3955 -1.7024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350143064.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:03 Heat of formation + Delta-G solvation = -114.238754 kcal Electronic energy + Delta-G solvation = -27206.622488 eV Core-core repulsion = 23037.924020 eV Total energy + Delta-G solvation = -4168.698468 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.52145 -38.62160 -37.55240 -36.22685 -35.81733 -34.72374 -34.64019 -34.62788 -31.62307 -31.07813 -30.01608 -27.18723 -26.35084 -24.62313 -23.93868 -22.37367 -20.77502 -19.04810 -18.27840 -18.00005 -17.21830 -16.81880 -16.45182 -15.87884 -15.52569 -15.46932 -15.13649 -14.84093 -14.65903 -14.29060 -14.00162 -13.71804 -13.41815 -13.36883 -12.89805 -12.82682 -12.49967 -12.26180 -12.04083 -11.51739 -11.37030 -11.21306 -11.12267 -11.09124 -10.92515 -10.84778 -10.65679 -10.40564 -10.16735 -10.00153 -9.90023 -9.52986 -9.35772 -9.18554 -8.52882 -8.36157 -6.63346 -3.96360 0.63719 0.89005 1.55595 2.03325 2.70301 3.05085 3.15543 3.17059 3.19754 3.47854 3.94866 4.03231 4.37106 4.50972 4.68245 4.76193 4.98549 5.05409 5.12382 5.24415 5.33758 5.42157 5.63185 5.68491 5.76744 5.86928 5.92735 5.99921 6.16407 6.23025 6.28685 6.45324 6.95718 7.31668 7.34700 7.71734 8.15813 8.55988 8.65185 9.12685 10.50118 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.008927 B = 0.005161 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3135.764485 B = 5423.600326 C = 5948.434692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.738 5.738 3 C 0.562 3.438 4 O -0.508 6.508 5 C -0.182 4.182 6 C -0.035 4.035 7 C -0.076 4.076 8 Cl -0.068 7.068 9 C 0.019 3.981 10 C -0.671 4.671 11 S 2.566 3.434 12 O -0.975 6.975 13 O -0.999 6.999 14 N -0.919 5.919 15 C -0.250 4.250 16 H 0.107 0.893 17 C 0.033 3.967 18 N -0.850 5.850 19 Si 0.924 3.076 20 H -0.267 1.267 21 H -0.279 1.279 22 H -0.270 1.270 23 C 0.264 3.736 24 O -0.314 6.314 25 C 0.048 3.952 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.399 0.601 30 H 0.137 0.863 31 H 0.156 0.844 32 H 0.413 0.587 33 H 0.280 0.720 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.179 -12.997 -5.880 15.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.391 5.391 3 C 0.349 3.651 4 O -0.384 6.384 5 C -0.187 4.187 6 C -0.055 4.055 7 C -0.104 4.104 8 Cl -0.039 7.039 9 C 0.000 4.000 10 C -0.747 4.747 11 S 2.657 3.343 12 O -0.965 6.965 13 O -0.987 6.987 14 N -0.669 5.669 15 C -0.397 4.397 16 H 0.125 0.875 17 C -0.178 4.178 18 N -0.491 5.491 19 Si 0.750 3.250 20 H -0.192 1.192 21 H -0.204 1.204 22 H -0.195 1.195 23 C 0.217 3.783 24 O -0.230 6.230 25 C -0.045 4.045 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.233 0.767 30 H 0.155 0.845 31 H 0.174 0.826 32 H 0.249 0.751 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.086 0.914 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.136 -12.096 -6.565 15.069 hybrid contribution -0.387 -1.443 1.053 1.828 sum -6.523 -13.539 -5.511 16.007 Atomic orbital electron populations 1.21518 0.79173 1.02076 1.02543 1.45696 1.07833 1.08432 1.77153 1.17929 0.86544 0.83959 0.76689 1.90841 1.69339 1.30519 1.47662 1.20281 0.93458 0.93641 1.11307 1.21062 0.92293 0.97242 0.94892 1.20829 0.92164 0.87646 1.09729 1.98358 1.76483 1.31823 1.97226 1.20994 1.01247 0.88790 0.89000 1.32823 1.05492 1.24004 1.12367 1.09763 0.76219 0.73218 0.75126 1.93430 1.31431 1.84148 1.87446 1.93352 1.79079 1.68219 1.58048 1.52085 1.69091 1.25604 1.20078 1.19499 1.26124 1.11100 0.82971 0.87543 1.25446 0.95965 0.96342 1.00055 1.69700 1.33001 1.16880 1.29508 0.86015 0.79458 0.79215 0.80351 1.19158 1.20431 1.19485 1.18125 0.88189 0.85420 0.86559 1.85941 1.73147 1.33070 1.30806 1.23072 0.99399 0.98909 0.83114 0.92160 0.90718 0.92018 0.76694 0.84494 0.82635 0.75067 0.90998 0.88615 0.91350 0.93859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 10.70 59.85 0.64 1.44 16 2 N -0.74 -8.08 5.66 -68.15 -0.39 -8.46 16 3 C 0.56 8.88 7.74 -12.47 -0.10 8.79 16 4 O -0.51 -9.71 13.38 -16.60 -0.22 -9.93 16 5 C -0.18 -3.03 5.89 -104.85 -0.62 -3.65 16 6 C -0.04 -0.48 9.31 -39.16 -0.36 -0.84 16 7 C -0.08 -1.13 6.31 -39.56 -0.25 -1.38 16 8 Cl -0.07 -0.84 28.94 -51.86 -1.50 -2.34 16 9 C 0.02 0.34 9.32 -39.50 -0.37 -0.03 16 10 C -0.67 -13.45 5.80 -39.48 -0.23 -13.68 16 11 S 2.57 57.80 5.26 -107.50 -0.57 57.23 16 12 O -0.97 -23.40 16.68 -57.17 -0.95 -24.36 16 13 O -1.00 -23.21 15.09 -62.10 -0.94 -24.15 16 14 N -0.92 -22.30 5.74 31.50 0.18 -22.12 16 15 C -0.25 -6.23 9.63 -15.06 -0.15 -6.38 16 16 H 0.11 2.51 7.82 -52.49 -0.41 2.10 16 17 C 0.03 0.83 5.50 -17.43 -0.10 0.73 16 18 N -0.85 -21.97 13.06 55.49 0.72 -21.24 16 19 Si 0.92 19.11 29.55 -169.99 -5.02 14.08 16 20 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 21 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 C 0.26 5.25 5.69 -38.71 -0.22 5.03 16 24 O -0.31 -6.66 8.11 -45.57 -0.37 -7.03 16 25 C 0.05 0.88 9.78 101.05 0.99 1.87 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.40 3.15 6.86 -40.82 -0.28 2.87 16 30 H 0.14 1.27 6.40 -52.48 -0.34 0.94 16 31 H 0.16 2.60 7.31 -52.49 -0.38 2.21 16 32 H 0.41 10.23 8.04 -34.47 -0.28 9.96 16 33 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 34 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.07 1.26 6.38 -51.93 -0.33 0.93 16 36 H 0.04 0.73 6.82 -51.93 -0.35 0.38 16 LS Contribution 338.97 15.07 5.11 5.11 Total: -1.00 -31.49 338.97 -7.90 -39.39 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -3.20 Total: 11.90 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -0.76 Total: -8.09 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: 0.52 Total: -51.83 kcal Atomic # 8 Polarization: -62.98 SS G_CDS: -2.48 Total: -65.47 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.08 kcal Atomic # 16 Polarization: 57.80 SS G_CDS: -0.57 Total: 57.23 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.50 Total: -2.34 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.49 -7.90 -39.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350143064.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.845 kcal (2) G-P(sol) polarization free energy of solvation -31.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds