Wall clock time and date at job start Wed Apr 1 2020 04:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34774 * 120.00271 * 2 1 4 4 O 1.21591 * 119.99884 * 359.97438 * 3 2 1 5 5 C 1.47529 * 120.00273 * 180.02562 * 3 2 1 6 6 C 1.39712 * 120.18605 * 359.97364 * 5 3 2 7 7 C 1.37897 * 119.89788 * 180.02562 * 6 5 3 8 8 Cl 1.73592 * 119.86419 * 180.02562 * 7 6 5 9 9 C 1.38643 * 120.26963 * 359.97438 * 7 6 5 10 10 C 1.38053 * 120.37928 * 0.02562 * 9 7 6 11 11 S 1.76206 * 119.94978 * 179.97438 * 10 9 7 12 12 O 1.42095 * 106.40048 * 357.43667 * 11 10 9 13 13 O 1.42094 * 106.40255 * 130.36419 * 11 10 9 14 14 N 1.65606 * 107.21417 * 243.90109 * 11 10 9 15 15 C 1.36934 * 119.99848 * 63.67095 * 14 11 10 16 16 H 1.07997 * 120.00208 * 5.11469 * 15 14 11 17 17 C 1.38813 * 119.99990 * 185.10990 * 15 14 11 18 18 N 1.31622 * 119.99710 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00209 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47301 * 60.00484 * 19 17 15 21 21 H 1.48510 * 109.47165 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47305 * 300.00093 * 19 17 15 23 23 C 1.38695 * 120.09797 * 359.97438 * 10 9 7 24 24 O 1.35677 * 120.13430 * 180.02562 * 23 10 9 25 25 C 1.42902 * 117.00341 * 95.02769 * 24 23 10 26 26 H 1.09003 * 109.47144 * 60.00002 * 1 2 3 27 27 H 1.09000 * 109.47389 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47114 * 300.00094 * 1 2 3 29 29 H 0.96999 * 119.99920 * 179.97438 * 2 1 3 30 30 H 1.08006 * 120.05360 * 0.02562 * 6 5 3 31 31 H 1.08000 * 119.81172 * 180.27890 * 9 7 6 32 32 H 0.96997 * 119.99597 * 243.66846 * 14 11 10 33 33 H 0.97004 * 120.00122 * 180.02562 * 18 17 15 34 34 H 1.08997 * 109.46748 * 185.59402 * 25 24 23 35 35 H 1.08995 * 109.47025 * 305.59450 * 25 24 23 36 36 H 1.09004 * 109.46913 * 65.59881 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5310 2.2202 -0.0005 5 6 3.6142 1.1671 -0.0006 6 6 4.3167 -0.0405 -0.0006 7 6 5.6956 -0.0336 -0.0006 8 17 6.5676 -1.5346 -0.0012 9 6 6.3884 1.1673 -0.0011 10 6 5.7057 2.3672 -0.0011 11 16 6.5977 3.8868 -0.0011 12 8 7.9752 3.5435 0.0598 13 8 6.0394 4.6798 -1.0398 14 7 6.2456 4.6618 1.4194 15 6 6.6098 4.1004 2.6141 16 1 7.1984 3.1950 2.6281 17 6 6.2227 4.6951 3.8071 18 7 5.5051 5.7983 3.7900 19 14 6.7201 3.9297 5.4368 20 1 8.2015 3.8762 5.5270 21 1 6.1852 4.7504 6.5530 22 1 6.1687 2.5538 5.5264 23 6 4.3188 2.3783 -0.0011 24 8 3.6471 3.5571 -0.0017 25 6 3.2289 4.0651 -1.2702 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.9499 -0.8400 0.0004 30 1 3.7806 -0.9781 -0.0005 31 1 7.4684 1.1641 -0.0057 32 1 5.7814 5.5134 1.4051 33 1 5.2348 6.2142 4.6237 34 1 2.7935 5.0557 -1.1393 35 1 4.0890 4.1313 -1.9365 36 1 2.4852 3.3955 -1.7024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350143064.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:01 Heat of formation + Delta-G solvation = -138.394240 kcal Electronic energy + Delta-G solvation = -27207.669949 eV Core-core repulsion = 23037.924020 eV Total energy + Delta-G solvation = -4169.745929 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.84783 -39.90345 -38.96469 -37.89578 -37.31966 -36.68085 -36.48164 -35.71086 -32.96659 -32.87219 -31.40351 -28.30913 -27.62429 -26.45023 -25.26085 -23.76817 -21.99914 -20.54005 -20.09702 -19.67224 -18.64909 -18.39938 -17.96078 -17.42192 -16.89413 -16.73728 -16.45839 -16.37957 -16.11940 -16.03197 -15.40384 -15.18613 -14.95288 -14.56342 -14.14115 -13.89892 -13.82249 -13.72393 -13.11340 -13.07291 -12.99596 -12.97013 -12.89472 -12.79472 -12.48044 -12.36639 -12.28247 -12.08299 -11.81321 -11.78078 -11.26636 -10.98337 -10.74351 -10.21736 -10.17772 -9.82902 -8.36195 -5.88222 -0.71281 -0.52817 -0.24820 0.83869 1.39728 1.47562 1.52115 1.58001 2.01937 2.18131 2.25568 2.54756 2.65846 2.87367 3.20115 3.33669 3.57296 3.65147 3.83240 4.04674 4.18710 4.37142 4.38813 4.47281 4.50380 4.62218 4.62699 4.74479 4.81059 4.95026 5.07093 5.08298 5.31267 5.57457 6.23454 6.39248 6.71546 6.91972 7.08798 7.29555 8.80830 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.008927 B = 0.005161 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3135.764485 B = 5423.600326 C = 5948.434692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.715 5.715 3 C 0.556 3.444 4 O -0.550 6.550 5 C -0.186 4.186 6 C -0.003 4.003 7 C -0.072 4.072 8 Cl -0.034 7.034 9 C 0.015 3.985 10 C -0.696 4.696 11 S 2.640 3.360 12 O -0.989 6.989 13 O -1.002 7.002 14 N -0.952 5.952 15 C -0.302 4.302 16 H 0.109 0.891 17 C -0.012 4.012 18 N -0.911 5.911 19 Si 0.980 3.020 20 H -0.261 1.261 21 H -0.280 1.280 22 H -0.264 1.264 23 C 0.242 3.758 24 O -0.340 6.340 25 C 0.047 3.953 26 H 0.055 0.945 27 H 0.119 0.881 28 H 0.048 0.952 29 H 0.417 0.583 30 H 0.191 0.809 31 H 0.162 0.838 32 H 0.407 0.593 33 H 0.275 0.725 34 H 0.102 0.898 35 H 0.062 0.938 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.872 -17.559 -7.179 20.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.368 5.368 3 C 0.343 3.657 4 O -0.428 6.428 5 C -0.191 4.191 6 C -0.022 4.022 7 C -0.100 4.100 8 Cl -0.005 7.005 9 C -0.005 4.005 10 C -0.779 4.779 11 S 2.732 3.268 12 O -0.979 6.979 13 O -0.991 6.991 14 N -0.704 5.704 15 C -0.440 4.440 16 H 0.126 0.874 17 C -0.216 4.216 18 N -0.553 5.553 19 Si 0.803 3.197 20 H -0.186 1.186 21 H -0.205 1.205 22 H -0.188 1.188 23 C 0.195 3.805 24 O -0.256 6.256 25 C -0.046 4.046 26 H 0.074 0.926 27 H 0.138 0.862 28 H 0.067 0.933 29 H 0.255 0.745 30 H 0.208 0.792 31 H 0.179 0.821 32 H 0.242 0.758 33 H 0.084 0.916 34 H 0.121 0.879 35 H 0.081 0.919 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.785 -16.653 -7.729 19.573 hybrid contribution -0.203 -0.422 0.942 1.052 sum -6.988 -17.075 -6.788 19.659 Atomic orbital electron populations 1.21746 0.77513 1.04764 1.01701 1.45570 1.08836 1.07626 1.74759 1.17924 0.86178 0.84794 0.76823 1.90830 1.69833 1.32308 1.49870 1.20439 0.94435 0.93363 1.10879 1.21588 0.91891 0.98105 0.90613 1.20820 0.92805 0.88060 1.08283 1.98383 1.75939 1.29185 1.96979 1.21113 1.01657 0.89111 0.88601 1.31880 1.05681 1.22814 1.17571 1.04969 0.74935 0.73470 0.73441 1.93446 1.32148 1.84833 1.87514 1.93392 1.79472 1.68963 1.57266 1.51431 1.71418 1.27740 1.19772 1.19528 1.29589 1.11420 0.83477 0.87378 1.26107 0.96196 0.96672 1.02665 1.69803 1.36765 1.19217 1.29505 0.85180 0.79224 0.78443 0.76847 1.18571 1.20487 1.18846 1.18416 0.88209 0.86341 0.87580 1.85920 1.73459 1.34150 1.32117 1.23158 0.99450 0.99676 0.82318 0.92638 0.86221 0.93328 0.74530 0.79216 0.82077 0.75809 0.91562 0.87939 0.91944 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.21 10.70 127.77 1.37 2.57 16 2 N -0.71 -12.65 5.66 -487.79 -2.76 -15.41 16 3 C 0.56 16.22 7.74 86.69 0.67 16.90 16 4 O -0.55 -20.57 13.38 16.93 0.23 -20.34 16 5 C -0.19 -5.71 5.89 -20.01 -0.12 -5.83 16 6 C 0.00 -0.06 9.31 22.55 0.21 0.15 16 7 C -0.07 -1.84 6.31 22.29 0.14 -1.70 16 8 Cl -0.03 -0.68 28.94 -2.72 -0.08 -0.76 16 9 C 0.02 0.50 9.32 22.32 0.21 0.70 16 10 C -0.70 -27.38 5.80 22.33 0.13 -27.26 16 11 S 2.64 120.25 5.26 -56.49 -0.30 119.95 16 12 O -0.99 -47.41 16.68 -128.00 -2.14 -49.55 16 13 O -1.00 -46.89 15.09 -123.29 -1.86 -48.75 16 14 N -0.95 -48.53 5.74 -54.27 -0.31 -48.84 16 15 C -0.30 -15.81 9.63 84.03 0.81 -15.00 16 16 H 0.11 5.33 7.82 -2.91 -0.02 5.31 16 17 C -0.01 -0.64 5.50 84.86 0.47 -0.18 16 18 N -0.91 -50.62 13.06 21.65 0.28 -50.34 16 19 Si 0.98 40.90 29.55 68.60 2.03 42.93 16 20 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 21 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 22 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 23 C 0.24 9.43 5.69 22.84 0.13 9.56 16 24 O -0.34 -14.67 8.11 -64.29 -0.52 -15.19 16 25 C 0.05 1.73 9.78 113.37 1.11 2.83 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.42 4.10 6.86 -92.71 -0.64 3.46 16 30 H 0.19 2.17 6.40 -2.91 -0.02 2.15 16 31 H 0.16 5.04 7.31 -2.91 -0.02 5.02 16 32 H 0.41 21.63 8.04 -96.75 -0.78 20.85 16 33 H 0.28 14.41 8.31 -92.71 -0.77 13.64 16 34 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 35 H 0.06 2.31 6.38 -2.39 -0.02 2.30 16 36 H 0.06 1.90 6.82 -2.38 -0.02 1.88 16 Total: -1.00 -72.90 338.97 -0.54 -73.45 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: -0.24 Total: 30.11 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: 5.12 Total: -17.25 kcal Atomic # 7 Polarization: -111.81 SS G_CDS: -2.79 Total: -114.60 kcal Atomic # 8 Polarization: -129.54 SS G_CDS: -4.29 Total: -133.83 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Atomic # 16 Polarization: 120.25 SS G_CDS: -0.30 Total: 119.95 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -72.90 -0.54 -73.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350143064.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.948 kcal (2) G-P(sol) polarization free energy of solvation -72.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds