Wall clock time and date at job start Wed Apr 1 2020 04:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86801 * 120.00048 * 2 1 4 4 H 1.48501 * 109.47258 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47126 * 300.00341 * 3 2 1 6 6 H 1.48500 * 109.47192 * 60.00446 * 3 2 1 7 7 C 1.40047 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00394 * 180.02562 * 7 2 1 9 9 C 1.46378 * 119.99709 * 359.97438 * 7 2 1 10 10 O 1.21690 * 120.00171 * 0.02562 * 9 7 2 11 11 N 1.34776 * 119.99813 * 180.02562 * 9 7 2 12 12 C 1.46505 * 119.99805 * 180.02562 * 11 9 7 13 13 C 1.50702 * 109.46858 * 180.02562 * 12 11 9 14 14 N 1.30813 * 126.24697 * 90.02605 * 13 12 11 15 15 N 1.28684 * 110.28426 * 179.97438 * 14 13 12 16 16 C 1.32307 * 109.47559 * 0.02562 * 15 14 13 17 17 C 1.40922 * 133.46274 * 179.97438 * 16 15 14 18 18 Cl 1.73599 * 120.39692 * 0.04924 * 17 16 15 19 19 C 1.36122 * 119.20545 * 180.02562 * 17 16 15 20 20 C 1.40541 * 119.73381 * 359.97438 * 19 17 16 21 21 C 1.50703 * 119.80815 * 179.97438 * 20 19 17 22 22 F 1.39898 * 109.47072 * 270.02080 * 21 20 19 23 23 F 1.39897 * 109.46942 * 30.02603 * 21 20 19 24 24 F 1.39906 * 109.47029 * 150.02122 * 21 20 19 25 25 C 1.34947 * 120.38219 * 359.97438 * 20 19 17 26 26 N 1.36053 * 126.24471 * 270.00020 * 13 12 11 27 27 H 0.96998 * 119.99755 * 359.97438 * 1 2 3 28 28 H 0.96997 * 120.00329 * 0.02562 * 11 9 7 29 29 H 1.08998 * 109.47391 * 60.00351 * 12 11 9 30 30 H 1.08995 * 109.47407 * 299.99814 * 12 11 9 31 31 H 1.07997 * 120.12894 * 179.97438 * 19 17 16 32 32 H 1.07999 * 119.73726 * 180.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8819 2.3965 -1.2124 6 1 1.8821 2.3964 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2129 -0.0001 9 6 1.2750 -2.4805 -0.0005 10 8 0.0581 -2.4805 -0.0005 11 7 1.9489 -3.6477 -0.0005 12 6 1.2163 -4.9164 -0.0011 13 6 2.1957 -6.0619 -0.0004 14 7 2.6971 -6.6500 1.0550 15 7 3.5011 -7.5907 0.7017 16 6 3.5554 -7.6518 -0.6188 17 6 4.2585 -8.4726 -1.5231 18 17 5.3191 -9.7163 -0.9385 19 6 4.0956 -8.2788 -2.8606 20 6 3.2326 -7.2685 -3.3186 21 6 3.0515 -7.0522 -4.7990 22 9 3.9981 -6.1282 -5.2545 23 9 3.2235 -8.2664 -5.4722 24 9 1.7647 -6.5611 -5.0445 25 6 2.5652 -6.4911 -2.4404 26 7 2.7192 -6.6732 -1.0972 27 1 -0.4850 0.8400 0.0004 28 1 2.9189 -3.6477 -0.0002 29 1 0.5901 -4.9740 -0.8913 30 1 0.5894 -4.9744 0.8886 31 1 4.6275 -8.8990 -3.5669 32 1 1.9044 -5.7181 -2.8038 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355478494.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:56 Heat of formation + Delta-G solvation = -78.898159 kcal Electronic energy + Delta-G solvation = -27440.323374 eV Core-core repulsion = 22628.149448 eV Total energy + Delta-G solvation = -4812.173926 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.034 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.64232 -48.15692 -48.07306 -44.05744 -39.07211 -37.56993 -37.25613 -34.74261 -33.56967 -32.57366 -32.21006 -30.20554 -27.48163 -26.87746 -25.47772 -24.40220 -23.34598 -21.90939 -20.00199 -19.34439 -19.14188 -18.96169 -17.97996 -17.81153 -17.37321 -17.02959 -16.08226 -15.60158 -15.37759 -14.92469 -14.87233 -14.76723 -14.50456 -14.25198 -14.21725 -14.20567 -13.82339 -13.51539 -13.37486 -12.93459 -12.88864 -12.77812 -12.34985 -12.02404 -11.80012 -11.56278 -11.30692 -11.13764 -11.09017 -10.88036 -10.62780 -10.31471 -10.17660 -8.98707 -8.65939 -7.88352 -7.82449 -6.33541 -4.79841 -0.26495 0.29365 1.09046 1.74920 2.11177 2.17924 2.56268 3.06194 3.11610 3.15304 3.19398 3.37620 3.48879 3.82577 3.87361 3.97779 3.99478 4.12055 4.37699 4.43939 4.65884 4.71103 4.95961 5.00717 5.34756 5.42792 5.57632 5.83079 5.96480 6.19664 7.30722 7.58308 7.77790 8.12009 8.14537 8.88388 9.23716 10.39788 10.58867 Molecular weight = 348.03amu Principal moments of inertia in cm(-1) A = 0.011554 B = 0.003209 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.780109 B = 8724.615517 C =10128.603355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.088 3.912 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.540 4.540 8 H 0.070 0.930 9 C 0.556 3.444 10 O -0.575 6.575 11 N -0.764 5.764 12 C 0.216 3.784 13 C 0.177 3.823 14 N -0.227 5.227 15 N -0.257 5.257 16 C 0.191 3.809 17 C 0.008 3.992 18 Cl -0.006 7.006 19 C -0.054 4.054 20 C -0.207 4.207 21 C 0.530 3.470 22 F -0.166 7.166 23 F -0.168 7.168 24 F -0.168 7.168 25 C 0.166 3.834 26 N -0.389 5.389 27 H 0.270 0.730 28 H 0.383 0.617 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.168 0.832 32 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.678 -17.065 -10.519 21.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.577 4.577 8 H 0.088 0.912 9 C 0.361 3.639 10 O -0.457 6.457 11 N -0.423 5.423 12 C 0.089 3.911 13 C -0.085 4.085 14 N -0.065 5.065 15 N -0.101 5.101 16 C -0.060 4.060 17 C -0.023 4.023 18 Cl 0.023 6.977 19 C -0.079 4.079 20 C -0.213 4.213 21 C 0.475 3.525 22 F -0.147 7.147 23 F -0.149 7.149 24 F -0.150 7.150 25 C 0.041 3.959 26 N -0.070 5.070 27 H 0.081 0.919 28 H 0.215 0.785 29 H 0.093 0.907 30 H 0.116 0.884 31 H 0.186 0.814 32 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 7.879 -17.326 -8.785 20.963 hybrid contribution 0.802 0.911 -1.480 1.914 sum 8.681 -16.415 -10.264 21.217 Atomic orbital electron populations 1.70008 1.07074 1.27512 1.34637 1.25706 0.94673 1.00392 0.92491 0.86274 0.80478 0.81460 0.78356 1.18728 1.20057 1.19999 1.20863 0.93701 0.88915 1.54247 0.91214 1.18291 0.87238 0.81871 0.76494 1.90629 1.13864 1.86279 1.54969 1.46353 1.08831 1.03469 1.83634 1.19363 0.89176 0.78501 1.04091 1.25728 1.02368 1.00761 0.79627 1.74457 1.06073 1.03343 1.22641 1.75152 1.15537 1.14506 1.04875 1.21759 0.97264 0.93860 0.93099 1.19169 0.97806 0.94739 0.90593 1.98427 1.61696 1.48665 1.88873 1.20666 0.96741 0.96459 0.94040 1.19334 1.06218 1.02978 0.92758 1.17530 0.74528 0.74542 0.85948 1.93292 1.64655 1.66464 1.90267 1.93226 1.95126 1.44493 1.82051 1.93264 1.38653 1.87889 1.95149 1.21580 0.96421 0.97668 0.80272 1.43728 1.31408 1.25278 1.06607 0.91912 0.78488 0.90705 0.88398 0.81445 0.78958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.84 11.83 55.55 0.66 -21.18 16 2 C 0.09 2.34 5.50 -17.37 -0.10 2.24 16 3 Si 0.91 19.35 29.56 -169.99 -5.02 14.32 16 4 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.54 -14.46 9.54 -35.63 -0.34 -14.80 16 8 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 9 C 0.56 14.68 7.75 -12.99 -0.10 14.58 16 10 O -0.58 -17.29 15.02 5.20 0.08 -17.22 16 11 N -0.76 -15.66 5.54 -62.90 -0.35 -16.01 16 12 C 0.22 3.71 6.19 -5.19 -0.03 3.67 16 13 C 0.18 2.73 7.51 -154.23 -1.16 1.57 16 14 N -0.23 -3.89 12.19 32.94 0.40 -3.49 16 15 N -0.26 -4.16 12.31 31.16 0.38 -3.77 16 16 C 0.19 2.58 7.74 -156.04 -1.21 1.37 16 17 C 0.01 0.08 6.34 -39.33 -0.25 -0.17 16 18 Cl -0.01 -0.06 28.99 -51.86 -1.50 -1.56 16 19 C -0.05 -0.44 9.19 -39.47 -0.36 -0.80 16 20 C -0.21 -1.80 5.42 -104.92 -0.57 -2.37 16 21 C 0.53 4.37 3.36 36.01 0.12 4.49 16 22 F -0.17 -1.52 17.30 2.25 0.04 -1.48 16 23 F -0.17 -1.30 16.48 2.25 0.04 -1.27 16 24 F -0.17 -1.52 16.39 2.25 0.04 -1.48 16 25 C 0.17 1.69 10.26 -16.68 -0.17 1.52 16 26 N -0.39 -5.07 2.95 -59.70 -0.18 -5.25 16 27 H 0.27 6.99 8.29 -40.82 -0.34 6.65 16 28 H 0.38 7.23 8.44 -40.82 -0.34 6.88 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 31 H 0.17 0.90 7.64 -52.49 -0.40 0.50 16 32 H 0.19 1.71 7.51 -52.49 -0.39 1.31 16 LS Contribution 324.69 15.07 4.89 4.89 Total: -1.00 -32.87 324.69 -6.22 -39.09 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -1.53 Total: 3.08 kcal Atomic # 6 Polarization: 15.48 SS G_CDS: -4.16 Total: 11.31 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: 0.92 Total: -49.70 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: 0.08 Total: -17.22 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.11 Total: -4.22 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.32 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.50 Total: -1.56 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.87 -6.22 -39.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355478494.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.807 kcal (2) G-P(sol) polarization free energy of solvation -32.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds