Wall clock time and date at job start Wed Apr 1 2020 05:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86793 * 120.00265 * 2 1 4 4 H 1.48503 * 109.47589 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47072 * 300.00232 * 3 2 1 6 6 H 1.48503 * 109.47208 * 60.00075 * 3 2 1 7 7 C 1.39946 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00321 * 190.57533 * 7 2 1 9 9 C 1.41402 * 119.99878 * 10.57388 * 7 2 1 10 10 C 1.40739 * 120.24437 * 29.23642 * 9 7 2 11 11 C 1.37597 * 119.74677 * 180.27366 * 10 9 7 12 12 C 1.38653 * 120.24471 * 359.70306 * 11 10 9 13 13 C 1.38617 * 120.50532 * 0.02562 * 12 11 10 14 14 C 1.37637 * 120.24681 * 359.97280 * 13 12 11 15 15 S 1.76198 * 120.12935 * 180.02562 * 14 13 12 16 16 O 1.42102 * 106.40080 * 2.16901 * 15 14 13 17 17 O 1.42094 * 106.40398 * 229.25161 * 15 14 13 18 18 N 1.65594 * 107.21709 * 115.70696 * 15 14 13 19 19 C 1.39670 * 120.00429 * 298.70086 * 18 15 14 20 20 C 1.38929 * 120.07607 * 313.80327 * 19 18 15 21 21 C 1.38088 * 119.92741 * 179.97438 * 20 19 18 22 22 C 1.38304 * 120.07094 * 0.03757 * 21 20 19 23 23 C 1.38268 * 120.15304 * 359.97438 * 22 21 20 24 24 N 1.48004 * 119.96285 * 179.97438 * 23 22 21 25 25 O 1.21803 * 119.99888 * 180.02562 * 24 23 22 26 26 O 1.21802 * 120.00093 * 0.02562 * 24 23 22 27 27 C 1.38116 * 120.07403 * 359.97438 * 23 22 21 28 28 H 0.97005 * 120.00228 * 0.02562 * 1 2 3 29 29 H 1.08007 * 120.12285 * 0.02562 * 10 9 7 30 30 H 1.07994 * 119.87663 * 179.72805 * 11 10 9 31 31 H 1.08004 * 119.74553 * 180.02562 * 12 11 10 32 32 H 1.07997 * 119.87462 * 179.97438 * 13 12 11 33 33 H 0.97005 * 119.99549 * 118.70155 * 18 15 14 34 34 H 1.08004 * 120.03807 * 359.97438 * 20 19 18 35 35 H 1.07996 * 119.96324 * 180.02562 * 21 20 19 36 36 H 1.08001 * 119.92377 * 179.97438 * 22 21 20 37 37 H 1.08003 * 120.03885 * 179.72257 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6176 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0741 -1.2199 0.1722 9 6 1.3189 -2.4262 -0.2236 10 6 0.1569 -2.4458 -1.0174 11 6 -0.5088 -3.6322 -1.2242 12 6 -0.0352 -4.8064 -0.6590 13 6 1.1115 -4.7999 0.1199 14 6 1.7934 -3.6248 0.3401 15 16 3.2510 -3.6203 1.3300 16 8 3.4851 -4.9706 1.7056 17 8 3.0932 -2.5679 2.2717 18 7 4.5099 -3.1834 0.3469 19 6 4.8410 -3.9731 -0.7565 20 6 4.9346 -5.3527 -0.6223 21 6 5.2616 -6.1306 -1.7154 22 6 5.4966 -5.5376 -2.9425 23 6 5.4046 -4.1648 -3.0795 24 7 5.6575 -3.5346 -4.3946 25 8 5.5771 -2.3253 -4.5159 26 8 5.9461 -4.2252 -5.3555 27 6 5.0769 -3.3810 -1.9906 28 1 -0.4851 0.8401 -0.0004 29 1 -0.2132 -1.5324 -1.4591 30 1 -1.4031 -3.6489 -1.8292 31 1 -0.5637 -5.7332 -0.8269 32 1 1.4711 -5.7204 0.5555 33 1 5.0174 -2.3790 0.5374 34 1 4.7517 -5.8164 0.3359 35 1 5.3341 -7.2031 -1.6118 36 1 5.7527 -6.1482 -3.7958 37 1 5.0095 -2.3083 -2.0972 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355843607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:01 Heat of formation + Delta-G solvation = -30.551293 kcal Electronic energy + Delta-G solvation = -28573.149717 eV Core-core repulsion = 24410.513059 eV Total energy + Delta-G solvation = -4162.636658 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.08782 -39.67488 -37.76316 -36.62134 -36.48230 -35.26027 -35.15374 -34.03494 -31.88421 -30.41915 -29.76404 -29.42502 -26.51492 -25.71367 -22.95463 -22.41802 -21.87229 -21.31318 -19.74626 -18.82039 -18.52305 -17.87669 -17.46230 -17.35022 -16.77055 -16.45890 -16.09390 -15.57601 -15.20491 -14.68417 -14.47466 -14.16712 -13.54709 -13.43982 -13.23779 -12.89642 -12.73235 -12.12294 -12.07257 -11.72732 -11.57755 -11.49253 -11.47607 -11.34592 -11.31807 -11.25128 -11.21455 -11.05389 -10.93701 -10.69459 -10.62411 -10.05830 -9.61315 -9.58214 -9.46680 -8.64710 -8.21753 -7.76689 -7.17113 -4.94318 -0.10395 0.77154 1.15621 1.41789 1.50206 2.14986 2.59760 2.90173 2.94931 3.00162 3.25271 3.40001 3.66545 4.24050 4.30689 4.45110 4.57746 4.71558 4.91021 4.91561 5.13931 5.28526 5.33249 5.63263 5.73229 5.88626 5.94717 6.08400 6.08665 6.25391 6.29323 6.51475 6.59888 6.76925 6.89015 7.04169 7.13794 7.32738 7.48521 7.65444 7.70896 7.72560 8.11283 8.32924 8.47671 9.75387 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.009238 B = 0.005345 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3030.108787 B = 5237.669741 C = 6183.845551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.081 3.919 3 Si 0.916 3.084 4 H -0.254 1.254 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.446 4.446 8 H 0.084 0.916 9 C 0.186 3.814 10 C -0.154 4.154 11 C -0.075 4.075 12 C -0.245 4.245 13 C -0.003 4.003 14 C -0.776 4.776 15 S 2.689 3.311 16 O -0.987 6.987 17 O -0.947 6.947 18 N -1.061 6.061 19 C 0.178 3.822 20 C -0.103 4.103 21 C -0.095 4.095 22 C -0.076 4.076 23 C -0.028 4.028 24 N 0.031 4.969 25 O -0.158 6.158 26 O -0.167 6.167 27 C -0.070 4.070 28 H 0.290 0.710 29 H 0.127 0.873 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.425 0.575 34 H 0.173 0.827 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.014 -6.046 -2.728 10.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.142 4.142 3 Si 0.739 3.261 4 H -0.177 1.177 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.474 4.474 8 H 0.102 0.898 9 C 0.182 3.818 10 C -0.173 4.173 11 C -0.094 4.094 12 C -0.266 4.266 13 C -0.023 4.023 14 C -0.873 4.873 15 S 2.789 3.211 16 O -0.978 6.978 17 O -0.937 6.937 18 N -0.806 5.806 19 C 0.080 3.920 20 C -0.124 4.124 21 C -0.114 4.114 22 C -0.096 4.096 23 C -0.111 4.111 24 N 0.550 4.450 25 O -0.375 6.375 26 O -0.381 6.381 27 C -0.093 4.093 28 H 0.101 0.899 29 H 0.145 0.855 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.127 0.873 33 H 0.262 0.738 34 H 0.190 0.810 35 H 0.169 0.831 36 H 0.170 0.830 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 7.702 -6.488 -1.102 10.131 hybrid contribution -0.098 1.463 -0.926 1.734 sum 7.604 -5.024 -2.028 9.337 Atomic orbital electron populations 1.69758 1.07803 1.30375 1.31473 1.25956 0.94965 1.01966 0.91271 0.86095 0.81084 0.79784 0.79116 1.17720 1.19138 1.19148 1.19852 0.96312 0.90862 1.40394 0.89758 1.17015 0.90473 0.89557 0.84802 1.21539 0.97876 0.96933 1.00991 1.20944 0.97519 0.93480 0.97459 1.20514 1.00808 0.97199 1.08033 1.20216 0.93706 0.94850 0.93488 1.29587 1.24476 1.01349 1.31881 1.01653 0.73149 0.72735 0.73517 1.93407 1.85653 1.36906 1.81792 1.93582 1.85286 1.56434 1.58431 1.53893 1.49943 1.36948 1.39860 1.17050 0.98428 0.90173 0.86352 1.22417 0.95178 0.92444 1.02334 1.21046 0.98795 1.00969 0.90564 1.21029 0.97196 0.91596 0.99760 1.20842 1.13036 0.93708 0.83518 1.43610 0.97543 1.01016 1.02782 1.94564 1.55207 0.96680 1.91042 1.94503 1.50593 1.62759 1.30292 1.21055 0.96381 1.02406 0.89432 0.89896 0.85541 0.88584 0.88522 0.87307 0.73816 0.80966 0.83065 0.83047 0.82244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.24 10.87 55.55 0.60 -17.63 16 2 C 0.08 1.85 5.25 -17.34 -0.09 1.76 16 3 Si 0.92 17.32 29.57 -169.99 -5.03 12.30 16 4 H -0.25 -4.63 7.11 56.52 0.40 -4.23 16 5 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 6 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.45 -10.57 7.64 -37.74 -0.29 -10.86 16 8 H 0.08 1.82 5.82 -52.49 -0.31 1.52 16 9 C 0.19 4.50 5.54 -106.82 -0.59 3.91 16 10 C -0.15 -3.65 8.66 -38.87 -0.34 -3.99 16 11 C -0.08 -1.62 10.02 -39.66 -0.40 -2.02 16 12 C -0.24 -5.08 10.05 -39.29 -0.39 -5.47 16 13 C 0.00 -0.05 9.53 -39.66 -0.38 -0.43 16 14 C -0.78 -17.27 5.82 -38.87 -0.23 -17.50 16 15 S 2.69 52.83 4.86 -107.50 -0.52 52.31 16 16 O -0.99 -19.07 14.12 -57.17 -0.81 -19.88 16 17 O -0.95 -21.53 16.62 -57.17 -0.95 -22.48 16 18 N -1.06 -16.60 4.81 32.41 0.16 -16.44 16 19 C 0.18 2.60 6.13 -83.79 -0.51 2.09 16 20 C -0.10 -1.34 9.23 -39.38 -0.36 -1.71 16 21 C -0.09 -0.99 10.04 -39.61 -0.40 -1.39 16 22 C -0.08 -0.87 9.55 -39.55 -0.38 -1.24 16 23 C -0.03 -0.39 6.85 -79.99 -0.55 -0.94 16 24 N 0.03 0.49 4.45 33.94 0.15 0.64 16 25 O -0.16 -2.66 18.45 -29.46 -0.54 -3.21 16 26 O -0.17 -2.59 18.44 -29.46 -0.54 -3.13 16 27 C -0.07 -1.01 9.48 -39.38 -0.37 -1.39 16 28 H 0.29 6.13 8.30 -40.82 -0.34 5.80 16 29 H 0.13 3.05 6.25 -52.48 -0.33 2.73 16 30 H 0.10 1.81 8.06 -52.49 -0.42 1.38 16 31 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 32 H 0.11 2.06 7.33 -52.49 -0.38 1.67 16 33 H 0.43 5.61 8.81 -34.46 -0.30 5.31 16 34 H 0.17 2.31 5.71 -52.48 -0.30 2.01 16 35 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.15 1.41 7.60 -52.49 -0.40 1.01 16 37 H 0.16 2.27 7.61 -52.48 -0.40 1.87 16 LS Contribution 338.90 15.07 5.11 5.11 Total: -1.00 -29.22 338.90 -10.48 -39.69 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -2.82 Total: 11.89 kcal Atomic # 6 Polarization: -33.89 SS G_CDS: -5.28 Total: -39.17 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.91 Total: -33.43 kcal Atomic # 8 Polarization: -45.86 SS G_CDS: -2.84 Total: -48.70 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.30 kcal Atomic # 16 Polarization: 52.83 SS G_CDS: -0.52 Total: 52.31 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.22 -10.48 -39.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355843607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.140 kcal (2) G-P(sol) polarization free energy of solvation -29.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds