Wall clock time and date at job start Wed Apr 1 2020 05:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86806 * 120.00082 * 2 1 4 4 H 1.48496 * 109.46866 * 274.66199 * 3 2 1 5 5 H 1.48498 * 109.46883 * 34.65488 * 3 2 1 6 6 H 1.48493 * 109.47470 * 154.65968 * 3 2 1 7 7 C 1.39940 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00139 * 162.10605 * 7 2 1 9 9 C 1.41396 * 120.00247 * 342.11422 * 7 2 1 10 10 C 1.40716 * 120.23809 * 335.43838 * 9 7 2 11 11 C 1.37624 * 119.74224 * 180.23246 * 10 9 7 12 12 C 1.38629 * 120.24653 * 359.52057 * 11 10 9 13 13 S 1.76201 * 119.74946 * 180.27661 * 12 11 10 14 14 O 1.42107 * 106.40373 * 203.54153 * 13 12 11 15 15 O 1.42102 * 106.40063 * 336.46013 * 13 12 11 16 16 N 1.65598 * 107.21899 * 90.00185 * 13 12 11 17 17 C 1.38427 * 119.99722 * 65.00354 * 16 13 12 18 18 C 1.39425 * 119.52819 * 179.72698 * 17 16 13 19 19 C 1.36831 * 119.38003 * 179.76048 * 18 17 16 20 20 C 1.40415 * 118.48906 * 0.50174 * 19 18 17 21 21 C 1.47399 * 120.48000 * 179.76516 * 20 19 18 22 22 O 1.21516 * 120.00235 * 359.97321 * 21 20 19 23 23 O 1.34759 * 120.00187 * 179.97438 * 21 20 19 24 24 C 1.39622 * 119.03954 * 359.74520 * 20 19 18 25 25 N 1.31662 * 120.50962 * 359.97438 * 24 20 19 26 26 C 1.38642 * 120.50308 * 0.25595 * 12 11 10 27 27 C 1.37612 * 120.24660 * 359.97438 * 26 12 11 28 28 H 0.97002 * 120.00064 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.13067 * 0.03791 * 10 9 7 30 30 H 1.07999 * 119.87648 * 179.80170 * 11 10 9 31 31 H 0.96995 * 120.00089 * 245.00103 * 16 13 12 32 32 H 1.07996 * 120.31121 * 359.97438 * 18 17 16 33 33 H 1.08003 * 120.75576 * 180.23904 * 19 18 17 34 34 H 0.96695 * 116.99903 * 179.97438 * 23 21 20 35 35 H 1.08001 * 119.74539 * 179.97438 * 24 20 19 36 36 H 1.08003 * 119.87153 * 179.97438 * 26 12 11 37 37 H 1.08001 * 120.12580 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3912 2.1033 -1.3954 5 1 1.4924 2.6223 0.7961 6 1 3.5856 1.4139 0.5992 7 6 2.0080 -1.2119 0.0005 8 1 3.0488 -1.2346 -0.2868 9 6 1.3523 -2.4067 0.3771 10 6 0.2237 -2.3615 1.2163 11 6 -0.4037 -3.5310 1.5804 12 6 0.0663 -4.7496 1.1156 13 16 -0.7515 -6.2384 1.5840 14 8 0.2061 -7.2803 1.4537 15 8 -1.4330 -5.9567 2.7987 16 7 -1.9209 -6.5333 0.4492 17 6 -1.5618 -6.8118 -0.8583 18 6 -2.5542 -7.0643 -1.8046 19 6 -2.1961 -7.3343 -3.0973 20 6 -0.8304 -7.3577 -3.4230 21 6 -0.3953 -7.6490 -4.8008 22 8 -1.2206 -7.8717 -5.6644 23 8 0.9179 -7.6685 -5.1028 24 6 0.1094 -7.1006 -2.4229 25 7 -0.2787 -6.8395 -1.1922 26 6 1.1746 -4.8057 0.2845 27 6 1.8205 -3.6493 -0.0886 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1469 -1.4129 1.5758 30 1 -1.2682 -3.4991 2.2269 31 1 -2.8574 -6.5110 0.7008 32 1 -3.5960 -7.0435 -1.5206 33 1 -2.9466 -7.5293 -3.8491 34 1 1.1546 -7.8646 -6.0196 35 1 1.1628 -7.1161 -2.6607 36 1 1.5323 -5.7606 -0.0713 37 1 2.6835 -3.6952 -0.7364 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387506330.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:11 Heat of formation + Delta-G solvation = -109.392243 kcal Electronic energy + Delta-G solvation = -27559.039516 eV Core-core repulsion = 23392.984057 eV Total energy + Delta-G solvation = -4166.055458 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.87921 -39.67671 -37.55828 -36.60524 -36.22627 -35.43105 -35.22216 -34.05336 -32.74077 -30.28945 -30.26163 -29.42670 -25.83915 -24.80470 -24.00155 -21.73461 -21.50698 -21.13163 -19.35884 -18.53258 -18.21901 -17.60106 -17.39601 -17.31940 -16.56105 -15.77932 -15.66614 -15.50195 -14.97984 -14.59867 -14.34512 -14.13368 -13.95977 -13.40880 -13.31705 -13.14541 -12.92067 -12.42853 -12.14955 -11.93073 -11.83780 -11.74220 -11.56727 -11.45627 -11.40858 -11.32565 -11.17493 -10.92197 -10.89730 -10.43608 -10.14200 -9.76563 -9.55578 -9.52393 -9.48624 -8.57740 -7.96444 -7.65852 -7.16265 -4.81291 0.47186 0.97686 1.14848 2.24582 2.42791 2.84893 2.87459 2.88618 2.94761 2.97517 3.19747 3.65060 3.68569 4.12618 4.19668 4.47490 4.63294 4.69113 4.69649 5.06828 5.12988 5.31098 5.41533 5.57777 5.88129 5.96511 6.10648 6.24657 6.28363 6.33899 6.67174 6.68248 6.76116 6.97358 7.07082 7.36951 7.45490 7.64039 7.69309 7.77878 7.79969 7.97916 8.31372 8.51181 8.65644 9.74938 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.009689 B = 0.003844 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2889.106461 B = 7281.429770 C = 9203.231122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.073 3.927 3 Si 0.916 3.084 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.433 4.433 8 H 0.088 0.912 9 C 0.142 3.858 10 C -0.183 4.183 11 C -0.020 4.020 12 C -0.777 4.777 13 S 2.676 3.324 14 O -0.952 6.952 15 O -0.975 6.975 16 N -1.034 6.034 17 C 0.436 3.564 18 C -0.221 4.221 19 C 0.023 3.977 20 C -0.235 4.235 21 C 0.542 3.458 22 O -0.524 6.524 23 O -0.510 6.510 24 C 0.221 3.779 25 N -0.518 5.518 26 C 0.024 3.976 27 C -0.246 4.246 28 H 0.289 0.711 29 H 0.121 0.879 30 H 0.101 0.899 31 H 0.430 0.570 32 H 0.147 0.853 33 H 0.150 0.850 34 H 0.414 0.586 35 H 0.179 0.821 36 H 0.119 0.881 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.674 -8.695 -6.492 11.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.150 4.150 3 Si 0.739 3.261 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.461 4.461 8 H 0.106 0.894 9 C 0.138 3.862 10 C -0.204 4.204 11 C -0.041 4.041 12 C -0.876 4.876 13 S 2.778 3.222 14 O -0.942 6.942 15 O -0.966 6.966 16 N -0.774 5.774 17 C 0.202 3.798 18 C -0.246 4.246 19 C -0.003 4.003 20 C -0.241 4.241 21 C 0.387 3.613 22 O -0.414 6.414 23 O -0.322 6.322 24 C 0.061 3.939 25 N -0.233 5.233 26 C 0.004 3.996 27 C -0.267 4.267 28 H 0.100 0.900 29 H 0.139 0.861 30 H 0.119 0.881 31 H 0.265 0.735 32 H 0.164 0.836 33 H 0.167 0.833 34 H 0.273 0.727 35 H 0.196 0.804 36 H 0.137 0.863 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.351 -8.936 -4.832 10.697 hybrid contribution -0.634 1.245 -1.607 2.130 sum -3.986 -7.690 -6.439 10.793 Atomic orbital electron populations 1.69820 1.07957 1.30340 1.30710 1.26140 0.94876 1.02152 0.91786 0.86155 0.80861 0.79619 0.79485 1.19112 1.19588 1.17936 1.19966 0.98514 0.91203 1.36403 0.89391 1.17874 0.89838 0.92260 0.86223 1.21302 1.00200 0.96701 1.02173 1.20268 0.96831 0.91827 0.95142 1.28791 1.16686 1.14502 1.27578 1.02000 0.72700 0.75480 0.72044 1.93521 1.59287 1.55948 1.85470 1.93533 1.75062 1.86698 1.41315 1.54198 1.24761 1.79500 1.18905 1.18243 0.89889 0.86745 0.84969 1.21247 1.00370 1.09839 0.93176 1.21156 0.94531 0.88784 0.95820 1.19807 0.95274 1.16655 0.92333 1.20450 0.79987 0.72464 0.88403 1.90883 1.53953 1.46907 1.49653 1.84573 1.26513 1.83575 1.37549 1.22960 1.00362 0.85449 0.85081 1.67430 1.15003 1.19515 1.21396 1.20339 0.91103 0.97779 0.90370 1.21062 1.04855 0.92689 1.08062 0.90017 0.86076 0.88077 0.73468 0.83568 0.83268 0.72685 0.80427 0.86337 0.88246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.01 10.97 55.55 0.61 -17.40 16 2 C 0.07 1.65 5.14 -17.34 -0.09 1.56 16 3 Si 0.92 16.84 29.60 -169.99 -5.03 11.81 16 4 H -0.27 -4.83 7.11 56.52 0.40 -4.42 16 5 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 6 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 7 C -0.43 -10.52 9.05 -37.74 -0.34 -10.86 16 8 H 0.09 2.02 7.91 -52.48 -0.42 1.60 16 9 C 0.14 3.55 5.57 -106.83 -0.60 2.96 16 10 C -0.18 -4.53 8.70 -38.87 -0.34 -4.87 16 11 C -0.02 -0.46 9.49 -39.66 -0.38 -0.84 16 12 C -0.78 -16.87 5.79 -39.29 -0.23 -17.10 16 13 S 2.68 50.33 5.38 -107.50 -0.58 49.75 16 14 O -0.95 -19.74 16.11 -57.17 -0.92 -20.66 16 15 O -0.98 -19.86 17.26 -57.17 -0.99 -20.84 16 16 N -1.03 -14.90 5.82 31.11 0.18 -14.72 16 17 C 0.44 6.36 7.32 -155.29 -1.14 5.22 16 18 C -0.22 -2.49 9.86 -39.65 -0.39 -2.88 16 19 C 0.02 0.25 9.65 -39.27 -0.38 -0.13 16 20 C -0.24 -2.88 5.89 -104.83 -0.62 -3.50 16 21 C 0.54 6.32 8.27 34.46 0.28 6.60 16 22 O -0.52 -7.24 17.20 -19.28 -0.33 -7.57 16 23 O -0.51 -4.49 12.69 -40.65 -0.52 -5.00 16 24 C 0.22 2.97 10.79 -17.11 -0.18 2.79 16 25 N -0.52 -8.32 6.17 -12.13 -0.07 -8.40 16 26 C 0.02 0.54 8.36 -39.66 -0.33 0.20 16 27 C -0.25 -5.73 9.80 -38.88 -0.38 -6.11 16 28 H 0.29 6.08 8.30 -40.82 -0.34 5.74 16 29 H 0.12 3.04 6.17 -52.49 -0.32 2.71 16 30 H 0.10 2.12 7.60 -52.49 -0.40 1.72 16 31 H 0.43 4.50 8.81 -34.47 -0.30 4.20 16 32 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 33 H 0.15 1.39 7.73 -52.48 -0.41 0.98 16 34 H 0.41 1.72 9.11 45.56 0.42 2.14 16 35 H 0.18 2.02 7.61 -52.49 -0.40 1.62 16 36 H 0.12 2.41 6.51 -52.48 -0.34 2.07 16 37 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 342.03 15.07 5.15 5.15 Total: -1.00 -33.07 342.03 -9.75 -42.82 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -2.15 Total: 12.01 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: -5.10 Total: -26.95 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.72 Total: -40.52 kcal Atomic # 8 Polarization: -51.32 SS G_CDS: -2.76 Total: -54.08 kcal Atomic # 14 Polarization: 16.84 SS G_CDS: -5.03 Total: 11.81 kcal Atomic # 16 Polarization: 50.33 SS G_CDS: -0.58 Total: 49.75 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.07 -9.75 -42.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387506330.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.570 kcal (2) G-P(sol) polarization free energy of solvation -33.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds