Wall clock time and date at job start Wed Apr 1 2020 05:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86806 * 120.00082 * 2 1 4 4 H 1.48496 * 109.46866 * 274.66199 * 3 2 1 5 5 H 1.48498 * 109.46883 * 34.65488 * 3 2 1 6 6 H 1.48493 * 109.47470 * 154.65968 * 3 2 1 7 7 C 1.39940 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00139 * 162.10605 * 7 2 1 9 9 C 1.41396 * 120.00247 * 342.11422 * 7 2 1 10 10 C 1.40716 * 120.23809 * 335.43838 * 9 7 2 11 11 C 1.37624 * 119.74224 * 180.23246 * 10 9 7 12 12 C 1.38629 * 120.24653 * 359.52057 * 11 10 9 13 13 S 1.76201 * 119.74946 * 180.27661 * 12 11 10 14 14 O 1.42107 * 106.40373 * 203.54153 * 13 12 11 15 15 O 1.42102 * 106.40063 * 336.46013 * 13 12 11 16 16 N 1.65598 * 107.21899 * 90.00185 * 13 12 11 17 17 C 1.38427 * 119.99722 * 65.00354 * 16 13 12 18 18 C 1.39425 * 119.52819 * 179.72698 * 17 16 13 19 19 C 1.36831 * 119.38003 * 179.76048 * 18 17 16 20 20 C 1.40415 * 118.48906 * 0.50174 * 19 18 17 21 21 C 1.47399 * 120.48000 * 179.76516 * 20 19 18 22 22 O 1.21516 * 120.00235 * 359.97321 * 21 20 19 23 23 O 1.34759 * 120.00187 * 179.97438 * 21 20 19 24 24 C 1.39622 * 119.03954 * 359.74520 * 20 19 18 25 25 N 1.31662 * 120.50962 * 359.97438 * 24 20 19 26 26 C 1.38642 * 120.50308 * 0.25595 * 12 11 10 27 27 C 1.37612 * 120.24660 * 359.97438 * 26 12 11 28 28 H 0.97002 * 120.00064 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.13067 * 0.03791 * 10 9 7 30 30 H 1.07999 * 119.87648 * 179.80170 * 11 10 9 31 31 H 0.96995 * 120.00089 * 245.00103 * 16 13 12 32 32 H 1.07996 * 120.31121 * 359.97438 * 18 17 16 33 33 H 1.08003 * 120.75576 * 180.23904 * 19 18 17 34 34 H 0.96695 * 116.99903 * 179.97438 * 23 21 20 35 35 H 1.08001 * 119.74539 * 179.97438 * 24 20 19 36 36 H 1.08003 * 119.87153 * 179.97438 * 26 12 11 37 37 H 1.08001 * 120.12580 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3912 2.1033 -1.3954 5 1 1.4924 2.6223 0.7961 6 1 3.5856 1.4139 0.5992 7 6 2.0080 -1.2119 0.0005 8 1 3.0488 -1.2346 -0.2868 9 6 1.3523 -2.4067 0.3771 10 6 0.2237 -2.3615 1.2163 11 6 -0.4037 -3.5310 1.5804 12 6 0.0663 -4.7496 1.1156 13 16 -0.7515 -6.2384 1.5840 14 8 0.2061 -7.2803 1.4537 15 8 -1.4330 -5.9567 2.7987 16 7 -1.9209 -6.5333 0.4492 17 6 -1.5618 -6.8118 -0.8583 18 6 -2.5542 -7.0643 -1.8046 19 6 -2.1961 -7.3343 -3.0973 20 6 -0.8304 -7.3577 -3.4230 21 6 -0.3953 -7.6490 -4.8008 22 8 -1.2206 -7.8717 -5.6644 23 8 0.9179 -7.6685 -5.1028 24 6 0.1094 -7.1006 -2.4229 25 7 -0.2787 -6.8395 -1.1922 26 6 1.1746 -4.8057 0.2845 27 6 1.8205 -3.6493 -0.0886 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1469 -1.4129 1.5758 30 1 -1.2682 -3.4991 2.2269 31 1 -2.8574 -6.5110 0.7008 32 1 -3.5960 -7.0435 -1.5206 33 1 -2.9466 -7.5293 -3.8491 34 1 1.1546 -7.8646 -6.0196 35 1 1.1628 -7.1161 -2.6607 36 1 1.5323 -5.7606 -0.0713 37 1 2.6835 -3.6952 -0.7364 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387506330.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:11 Heat of formation + Delta-G solvation = -132.188777 kcal Electronic energy + Delta-G solvation = -27560.028047 eV Core-core repulsion = 23392.984057 eV Total energy + Delta-G solvation = -4167.043990 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.84779 -40.61732 -39.33687 -38.19017 -37.07777 -36.86138 -36.51653 -35.78889 -33.72885 -32.04438 -31.30326 -31.22150 -27.60891 -25.80843 -24.99323 -23.26232 -22.91238 -22.66977 -20.67827 -19.62324 -19.36105 -19.29291 -18.69535 -18.29853 -18.11875 -17.16036 -16.74998 -16.68491 -16.42246 -15.80419 -15.56910 -15.51332 -15.14758 -14.94531 -14.85694 -14.23305 -14.06202 -13.92192 -13.81159 -13.54595 -13.26777 -13.14184 -12.99455 -12.91978 -12.89712 -12.74078 -12.56488 -12.48071 -12.00113 -11.86017 -11.49412 -11.25194 -11.21080 -11.09332 -10.63479 -9.76877 -9.62039 -9.47060 -8.86762 -6.63621 -0.58003 -0.44889 0.22019 0.51188 1.13517 1.35820 1.41716 1.48355 1.52406 1.87709 2.10553 2.11806 2.48929 2.65055 2.85931 3.11044 3.49176 3.58558 3.75982 3.81531 3.81874 4.27955 4.33178 4.34344 4.51116 4.70249 4.89953 4.95260 4.98432 5.06447 5.15521 5.28496 5.38650 5.57243 5.58799 5.64652 5.71595 5.82648 5.96945 6.19885 6.51293 6.70732 6.71715 6.84549 7.00854 8.08246 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.009689 B = 0.003844 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2889.106461 B = 7281.429770 C = 9203.231122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.036 3.964 3 Si 0.989 3.011 4 H -0.258 1.258 5 H -0.263 1.263 6 H -0.256 1.256 7 C -0.467 4.467 8 H 0.091 0.909 9 C 0.115 3.885 10 C -0.209 4.209 11 C -0.024 4.024 12 C -0.790 4.790 13 S 2.717 3.283 14 O -0.971 6.971 15 O -0.991 6.991 16 N -1.022 6.022 17 C 0.406 3.594 18 C -0.202 4.202 19 C 0.022 3.978 20 C -0.234 4.234 21 C 0.549 3.451 22 O -0.546 6.546 23 O -0.505 6.505 24 C 0.207 3.793 25 N -0.554 5.554 26 C 0.027 3.973 27 C -0.264 4.264 28 H 0.298 0.702 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.448 0.552 32 H 0.185 0.815 33 H 0.172 0.828 34 H 0.435 0.565 35 H 0.189 0.811 36 H 0.133 0.867 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.529 -9.193 -7.518 12.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.183 4.183 3 Si 0.808 3.192 4 H -0.182 1.182 5 H -0.187 1.187 6 H -0.179 1.179 7 C -0.494 4.494 8 H 0.109 0.891 9 C 0.111 3.889 10 C -0.229 4.229 11 C -0.044 4.044 12 C -0.885 4.885 13 S 2.814 3.186 14 O -0.961 6.961 15 O -0.981 6.981 16 N -0.769 5.769 17 C 0.172 3.828 18 C -0.227 4.227 19 C -0.003 4.003 20 C -0.239 4.239 21 C 0.394 3.606 22 O -0.439 6.439 23 O -0.318 6.318 24 C 0.048 3.952 25 N -0.270 5.270 26 C 0.007 3.993 27 C -0.285 4.285 28 H 0.109 0.891 29 H 0.127 0.873 30 H 0.134 0.866 31 H 0.288 0.712 32 H 0.202 0.798 33 H 0.190 0.810 34 H 0.298 0.702 35 H 0.206 0.794 36 H 0.151 0.849 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.175 -9.415 -5.883 11.861 hybrid contribution -0.431 1.200 -1.386 1.883 sum -4.606 -8.215 -7.269 11.897 Atomic orbital electron populations 1.69849 1.09339 1.31760 1.31018 1.26976 0.95551 1.05093 0.90692 0.85078 0.79258 0.75069 0.79781 1.18242 1.18741 1.17920 1.20231 0.98935 0.92180 1.38038 0.89135 1.18206 0.90460 0.93339 0.86882 1.21317 1.01180 0.96979 1.03459 1.20488 0.97036 0.91869 0.95039 1.29321 1.17070 1.15751 1.26319 1.00774 0.72385 0.73822 0.71590 1.93495 1.60808 1.55845 1.85908 1.93510 1.75250 1.86654 1.42703 1.53525 1.24981 1.79764 1.18588 1.18543 0.90444 0.88581 0.85202 1.21573 1.01462 1.07450 0.92194 1.21494 0.94549 0.87961 0.96308 1.20009 0.95863 1.15585 0.92464 1.20317 0.80519 0.71858 0.87864 1.90879 1.54735 1.48105 1.50155 1.84536 1.24904 1.82900 1.39505 1.23144 1.01283 0.86003 0.84734 1.67289 1.16355 1.20615 1.22772 1.20522 0.90881 0.97908 0.89967 1.21270 1.05591 0.92851 1.08783 0.89107 0.87255 0.86622 0.71183 0.79778 0.81014 0.70242 0.79397 0.84939 0.87333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.24 10.97 21.82 0.24 -38.00 16 2 C 0.04 1.67 5.14 85.26 0.44 2.11 16 3 Si 0.99 34.50 29.60 68.60 2.03 36.53 16 4 H -0.26 -8.61 7.11 99.48 0.71 -7.90 16 5 H -0.26 -8.75 7.11 99.48 0.71 -8.05 16 6 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 7 C -0.47 -23.36 9.05 23.46 0.21 -23.15 16 8 H 0.09 4.29 7.91 -2.91 -0.02 4.27 16 9 C 0.11 5.95 5.57 -21.29 -0.12 5.83 16 10 C -0.21 -10.71 8.70 22.73 0.20 -10.51 16 11 C -0.02 -1.12 9.49 22.22 0.21 -0.91 16 12 C -0.79 -34.37 5.79 22.46 0.13 -34.24 16 13 S 2.72 99.61 5.38 -56.49 -0.30 99.31 16 14 O -0.97 -39.46 16.11 -128.00 -2.06 -41.52 16 15 O -0.99 -39.20 17.26 -128.00 -2.21 -41.41 16 16 N -1.02 -27.59 5.82 -55.50 -0.32 -27.91 16 17 C 0.41 11.07 7.32 133.27 0.98 12.05 16 18 C -0.20 -3.93 9.86 22.23 0.22 -3.71 16 19 C 0.02 0.44 9.65 22.47 0.22 0.65 16 20 C -0.23 -5.31 5.89 -20.00 -0.12 -5.43 16 21 C 0.55 11.76 8.27 70.23 0.58 12.35 16 22 O -0.55 -14.04 17.20 19.78 0.34 -13.70 16 23 O -0.50 -7.89 12.69 -56.69 -0.72 -8.61 16 24 C 0.21 5.36 10.79 85.05 0.92 6.27 16 25 N -0.55 -17.27 6.17 -192.28 -1.19 -18.45 16 26 C 0.03 1.20 8.36 22.22 0.19 1.39 16 27 C -0.26 -12.66 9.80 22.73 0.22 -12.44 16 28 H 0.30 12.68 8.30 -92.71 -0.77 11.91 16 29 H 0.11 5.73 6.17 -2.91 -0.02 5.71 16 30 H 0.12 4.88 7.60 -2.91 -0.02 4.86 16 31 H 0.45 8.26 8.81 -96.75 -0.85 7.41 16 32 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 33 H 0.17 2.59 7.73 -2.91 -0.02 2.57 16 34 H 0.44 2.65 9.11 -74.06 -0.67 1.97 16 35 H 0.19 4.16 7.61 -2.91 -0.02 4.14 16 36 H 0.13 5.42 6.51 -2.91 -0.02 5.40 16 37 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -72.23 342.03 -0.27 -72.50 By element: Atomic # 1 Polarization: 31.34 SS G_CDS: -0.35 Total: 30.99 kcal Atomic # 6 Polarization: -54.00 SS G_CDS: 4.27 Total: -49.73 kcal Atomic # 7 Polarization: -83.09 SS G_CDS: -1.27 Total: -84.36 kcal Atomic # 8 Polarization: -100.59 SS G_CDS: -4.65 Total: -105.24 kcal Atomic # 14 Polarization: 34.50 SS G_CDS: 2.03 Total: 36.53 kcal Atomic # 16 Polarization: 99.61 SS G_CDS: -0.30 Total: 99.31 kcal Total: -72.23 -0.27 -72.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387506330.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.686 kcal (2) G-P(sol) polarization free energy of solvation -72.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds