Wall clock time and date at job start Wed Apr 1 2020 05:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86802 * 119.99837 * 2 1 4 4 H 1.48495 * 109.47087 * 274.89286 * 3 2 1 5 5 H 1.48497 * 109.47300 * 34.89719 * 3 2 1 6 6 H 1.48505 * 109.46667 * 154.89446 * 3 2 1 7 7 C 1.39947 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99786 * 161.76508 * 7 2 1 9 9 C 1.41392 * 119.99892 * 341.76047 * 7 2 1 10 10 C 1.40717 * 120.24213 * 154.60453 * 9 7 2 11 11 C 1.37620 * 119.74565 * 180.02562 * 10 9 7 12 12 C 1.38643 * 120.24496 * 0.02562 * 11 10 9 13 13 S 1.76201 * 119.74760 * 179.97438 * 12 11 10 14 14 O 1.42107 * 106.40061 * 331.10712 * 13 12 11 15 15 O 1.42098 * 106.40308 * 198.18997 * 13 12 11 16 16 N 1.65596 * 107.21835 * 84.64479 * 13 12 11 17 17 C 1.39681 * 119.99777 * 64.98520 * 16 13 12 18 18 C 1.38908 * 120.07214 * 74.50768 * 17 16 13 19 19 C 1.38105 * 119.92583 * 179.97438 * 18 17 16 20 20 C 1.38291 * 120.06947 * 0.02562 * 19 18 17 21 21 N 1.48001 * 119.92147 * 179.97438 * 20 19 18 22 22 O 1.21799 * 120.00665 * 0.02562 * 21 20 19 23 23 O 1.21803 * 119.99814 * 180.02562 * 21 20 19 24 24 C 1.38282 * 120.15400 * 0.25798 * 20 19 18 25 25 C 1.38106 * 120.07039 * 359.44363 * 24 20 19 26 26 C 1.38636 * 120.50211 * 0.25320 * 12 11 10 27 27 C 1.37621 * 120.24595 * 359.44957 * 26 12 11 28 28 H 0.97000 * 119.99774 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.13081 * 359.97438 * 10 9 7 30 30 H 1.07992 * 119.87828 * 179.97438 * 11 10 9 31 31 H 0.97004 * 120.00372 * 244.97992 * 16 13 12 32 32 H 1.08004 * 120.03830 * 359.97438 * 18 17 16 33 33 H 1.07998 * 119.96488 * 179.97438 * 19 18 17 34 34 H 1.07994 * 119.96729 * 179.72387 * 24 20 19 35 35 H 1.08001 * 120.03710 * 180.25993 * 25 24 20 36 36 H 1.07995 * 119.87133 * 179.70422 * 26 12 11 37 37 H 1.08000 * 120.12105 * 180.27819 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3863 2.1062 -1.3949 5 1 1.4953 2.6206 0.8010 6 1 3.5877 1.4125 0.5941 7 6 2.0080 -1.2120 -0.0005 8 1 3.0473 -1.2353 -0.2932 9 6 1.3543 -2.4059 0.3822 10 6 1.8124 -3.6485 -0.0933 11 6 1.1681 -4.8041 0.2853 12 6 0.0713 -4.7470 1.1315 13 16 -0.7441 -6.2347 1.6073 14 8 -0.5573 -7.1539 0.5397 15 8 -2.0254 -5.8535 2.0894 16 7 0.0793 -6.8516 2.9049 17 6 0.1094 -6.1484 4.1114 18 6 -1.0141 -6.1184 4.9278 19 6 -0.9808 -5.4226 6.1203 20 6 0.1692 -4.7557 6.5015 21 7 0.2010 -4.0106 7.7799 22 8 -0.7846 -3.9855 8.4950 23 8 1.2130 -3.4224 8.1169 24 6 1.2874 -4.7787 5.6884 25 6 1.2629 -5.4777 4.4976 26 6 -0.3922 -3.5279 1.6013 27 6 0.2403 -2.3601 1.2407 28 1 -0.4850 0.8401 0.0004 29 1 2.6659 -3.6951 -0.7534 30 1 1.5177 -5.7589 -0.0786 31 1 0.5406 -7.7014 2.8272 32 1 -1.9126 -6.6386 4.6303 33 1 -1.8540 -5.3985 6.7553 34 1 2.1824 -4.2532 5.9870 35 1 2.1379 -5.4987 3.8649 36 1 -1.2504 -3.4949 2.2561 37 1 -0.1198 -1.4118 1.6115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387594566.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:05 Heat of formation + Delta-G solvation = -36.549922 kcal Electronic energy + Delta-G solvation = -27538.484917 eV Core-core repulsion = 23375.588139 eV Total energy + Delta-G solvation = -4162.896778 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.19523 -39.80200 -37.72893 -36.77975 -36.58306 -35.46052 -35.29792 -34.17916 -31.59369 -30.43576 -30.39005 -29.63121 -26.00950 -25.96846 -23.35724 -22.38324 -21.69477 -21.29772 -19.43157 -19.40409 -18.68372 -18.08121 -17.75900 -17.55168 -17.43147 -16.66858 -15.74327 -15.52494 -15.04801 -14.86517 -14.26979 -14.01872 -13.77499 -13.58114 -13.34616 -13.25047 -12.58708 -12.35453 -12.06470 -11.96711 -11.90606 -11.72079 -11.61674 -11.60803 -11.46526 -11.36230 -11.21887 -11.16062 -11.00219 -10.62436 -10.36775 -9.88540 -9.73186 -9.60796 -9.55620 -9.31980 -8.12004 -7.87013 -7.27736 -4.94077 -0.31005 0.81459 0.81696 1.28243 1.37814 2.08676 2.76725 2.79169 2.83673 2.88820 3.08084 3.28978 3.57466 4.05405 4.19295 4.30231 4.34354 4.61071 4.76532 4.83004 5.05880 5.19268 5.25081 5.49749 5.61064 5.73240 5.88834 5.95262 5.97012 6.11594 6.37523 6.53746 6.56517 6.71413 6.87968 6.89531 7.18968 7.26416 7.47205 7.61389 7.62252 7.82090 8.17422 8.36663 8.49510 9.64115 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.008561 B = 0.004224 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3269.742044 B = 6627.307659 C = 9037.494453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.072 3.928 3 Si 0.917 3.083 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.429 4.429 8 H 0.090 0.910 9 C 0.140 3.860 10 C -0.236 4.236 11 C 0.003 3.997 12 C -0.790 4.790 13 S 2.680 3.320 14 O -0.971 6.971 15 O -0.971 6.971 16 N -1.080 6.080 17 C 0.203 3.797 18 C -0.111 4.111 19 C -0.047 4.047 20 C -0.048 4.048 21 N 0.032 4.968 22 O -0.165 6.165 23 O -0.162 6.162 24 C -0.045 4.045 25 C -0.108 4.108 26 C -0.015 4.015 27 C -0.181 4.181 28 H 0.292 0.708 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.424 0.576 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.158 0.842 35 H 0.156 0.844 36 H 0.103 0.897 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.104 -7.916 8.061 11.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.381 5.381 2 C -0.152 4.152 3 Si 0.739 3.261 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.179 1.179 7 C -0.456 4.456 8 H 0.108 0.892 9 C 0.136 3.864 10 C -0.257 4.257 11 C -0.017 4.017 12 C -0.887 4.887 13 S 2.782 3.218 14 O -0.962 6.962 15 O -0.961 6.961 16 N -0.831 5.831 17 C 0.107 3.893 18 C -0.132 4.132 19 C -0.066 4.066 20 C -0.132 4.132 21 N 0.550 4.450 22 O -0.380 6.380 23 O -0.378 6.378 24 C -0.065 4.065 25 C -0.129 4.129 26 C -0.035 4.035 27 C -0.201 4.201 28 H 0.103 0.897 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.262 0.738 32 H 0.175 0.825 33 H 0.175 0.825 34 H 0.175 0.825 35 H 0.174 0.826 36 H 0.121 0.879 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.985 -8.446 7.040 11.039 hybrid contribution 0.999 1.206 0.118 1.571 sum 1.984 -7.240 7.158 10.373 Atomic orbital electron populations 1.69814 1.08023 1.30732 1.29522 1.26178 0.94906 1.02315 0.91784 0.86132 0.80828 0.79459 0.79636 1.18971 1.19439 1.17858 1.19997 0.98711 0.91247 1.35656 0.89228 1.17853 0.89869 0.92176 0.86462 1.21017 1.04569 0.92742 1.07341 1.20120 0.91811 0.97430 0.92363 1.28873 1.19762 1.14597 1.25509 1.01795 0.73757 0.74467 0.71768 1.93532 1.86613 1.64203 1.51855 1.93506 1.37907 1.84182 1.80543 1.53874 1.72947 1.32722 1.23595 1.17587 0.93536 0.92093 0.86058 1.21601 0.99786 0.99700 0.92150 1.20924 0.96503 0.92794 0.96412 1.21181 0.99043 1.05065 0.87871 1.43601 1.00077 0.99136 1.02144 1.94527 1.25867 1.66732 1.50867 1.94540 1.22360 1.43497 1.77409 1.20954 0.97376 0.95856 0.92270 1.21557 0.99637 0.95994 0.95732 1.20229 0.95852 0.91731 0.95690 1.21301 0.99942 0.96847 1.02014 0.89709 0.88043 0.87899 0.73793 0.82541 0.82516 0.82489 0.82643 0.87935 0.86191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.61 11.04 55.55 0.61 -16.99 16 2 C 0.07 1.58 5.12 -17.34 -0.09 1.49 16 3 Si 0.92 16.37 29.60 -169.99 -5.03 11.34 16 4 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 5 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 6 H -0.26 -4.51 7.11 56.52 0.40 -4.11 16 7 C -0.43 -9.99 9.05 -37.74 -0.34 -10.33 16 8 H 0.09 1.95 7.91 -52.49 -0.42 1.54 16 9 C 0.14 3.34 5.56 -106.83 -0.59 2.75 16 10 C -0.24 -5.16 9.80 -38.87 -0.38 -5.55 16 11 C 0.00 0.06 9.49 -39.66 -0.38 -0.32 16 12 C -0.79 -15.82 5.93 -39.29 -0.23 -16.05 16 13 S 2.68 45.61 5.71 -107.50 -0.61 44.99 16 14 O -0.97 -18.48 17.41 -57.17 -1.00 -19.48 16 15 O -0.97 -18.46 16.09 -57.17 -0.92 -19.38 16 16 N -1.08 -13.07 5.70 32.41 0.18 -12.89 16 17 C 0.20 2.44 5.82 -83.79 -0.49 1.95 16 18 C -0.11 -1.28 9.25 -39.38 -0.36 -1.64 16 19 C -0.05 -0.52 9.55 -39.61 -0.38 -0.90 16 20 C -0.05 -0.60 6.85 -79.92 -0.55 -1.15 16 21 N 0.03 0.45 4.45 33.98 0.15 0.60 16 22 O -0.16 -2.41 18.44 -29.46 -0.54 -2.96 16 23 O -0.16 -2.42 18.44 -29.46 -0.54 -2.96 16 24 C -0.04 -0.51 9.55 -39.61 -0.38 -0.89 16 25 C -0.11 -1.21 9.97 -39.38 -0.39 -1.60 16 26 C -0.01 -0.32 9.50 -39.66 -0.38 -0.69 16 27 C -0.18 -4.28 8.69 -38.87 -0.34 -4.61 16 28 H 0.29 6.06 8.30 -40.82 -0.34 5.73 16 29 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 30 H 0.10 1.83 7.72 -52.49 -0.41 1.43 16 31 H 0.42 3.78 8.95 -34.47 -0.31 3.47 16 32 H 0.16 1.64 7.90 -52.48 -0.41 1.23 16 33 H 0.16 1.47 7.60 -52.49 -0.40 1.08 16 34 H 0.16 1.56 7.60 -52.49 -0.40 1.16 16 35 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.10 2.11 7.48 -52.49 -0.39 1.72 16 37 H 0.12 2.92 6.25 -52.49 -0.33 2.59 16 LS Contribution 348.16 15.07 5.25 5.25 Total: -1.00 -29.32 348.16 -10.77 -40.09 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -3.04 Total: 9.92 kcal Atomic # 6 Polarization: -32.26 SS G_CDS: -5.28 Total: -37.54 kcal Atomic # 7 Polarization: -30.23 SS G_CDS: 0.95 Total: -29.28 kcal Atomic # 8 Polarization: -41.77 SS G_CDS: -3.00 Total: -44.77 kcal Atomic # 14 Polarization: 16.37 SS G_CDS: -5.03 Total: 11.34 kcal Atomic # 16 Polarization: 45.61 SS G_CDS: -0.61 Total: 44.99 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.32 -10.77 -40.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387594566.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.536 kcal (2) G-P(sol) polarization free energy of solvation -29.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds