Wall clock time and date at job start Wed Apr 1 2020 05:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86802 * 119.99837 * 2 1 4 4 H 1.48495 * 109.47087 * 274.89286 * 3 2 1 5 5 H 1.48497 * 109.47300 * 34.89719 * 3 2 1 6 6 H 1.48505 * 109.46667 * 154.89446 * 3 2 1 7 7 C 1.39947 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99786 * 161.76508 * 7 2 1 9 9 C 1.41392 * 119.99892 * 341.76047 * 7 2 1 10 10 C 1.40717 * 120.24213 * 154.60453 * 9 7 2 11 11 C 1.37620 * 119.74565 * 180.02562 * 10 9 7 12 12 C 1.38643 * 120.24496 * 0.02562 * 11 10 9 13 13 S 1.76201 * 119.74760 * 179.97438 * 12 11 10 14 14 O 1.42107 * 106.40061 * 331.10712 * 13 12 11 15 15 O 1.42098 * 106.40308 * 198.18997 * 13 12 11 16 16 N 1.65596 * 107.21835 * 84.64479 * 13 12 11 17 17 C 1.39681 * 119.99777 * 64.98520 * 16 13 12 18 18 C 1.38908 * 120.07214 * 74.50768 * 17 16 13 19 19 C 1.38105 * 119.92583 * 179.97438 * 18 17 16 20 20 C 1.38291 * 120.06947 * 0.02562 * 19 18 17 21 21 N 1.48001 * 119.92147 * 179.97438 * 20 19 18 22 22 O 1.21799 * 120.00665 * 0.02562 * 21 20 19 23 23 O 1.21803 * 119.99814 * 180.02562 * 21 20 19 24 24 C 1.38282 * 120.15400 * 0.25798 * 20 19 18 25 25 C 1.38106 * 120.07039 * 359.44363 * 24 20 19 26 26 C 1.38636 * 120.50211 * 0.25320 * 12 11 10 27 27 C 1.37621 * 120.24595 * 359.44957 * 26 12 11 28 28 H 0.97000 * 119.99774 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.13081 * 359.97438 * 10 9 7 30 30 H 1.07992 * 119.87828 * 179.97438 * 11 10 9 31 31 H 0.97004 * 120.00372 * 244.97992 * 16 13 12 32 32 H 1.08004 * 120.03830 * 359.97438 * 18 17 16 33 33 H 1.07998 * 119.96488 * 179.97438 * 19 18 17 34 34 H 1.07994 * 119.96729 * 179.72387 * 24 20 19 35 35 H 1.08001 * 120.03710 * 180.25993 * 25 24 20 36 36 H 1.07995 * 119.87133 * 179.70422 * 26 12 11 37 37 H 1.08000 * 120.12105 * 180.27819 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3863 2.1062 -1.3949 5 1 1.4953 2.6206 0.8010 6 1 3.5877 1.4125 0.5941 7 6 2.0080 -1.2120 -0.0005 8 1 3.0473 -1.2353 -0.2932 9 6 1.3543 -2.4059 0.3822 10 6 1.8124 -3.6485 -0.0933 11 6 1.1681 -4.8041 0.2853 12 6 0.0713 -4.7470 1.1315 13 16 -0.7441 -6.2347 1.6073 14 8 -0.5573 -7.1539 0.5397 15 8 -2.0254 -5.8535 2.0894 16 7 0.0793 -6.8516 2.9049 17 6 0.1094 -6.1484 4.1114 18 6 -1.0141 -6.1184 4.9278 19 6 -0.9808 -5.4226 6.1203 20 6 0.1692 -4.7557 6.5015 21 7 0.2010 -4.0106 7.7799 22 8 -0.7846 -3.9855 8.4950 23 8 1.2130 -3.4224 8.1169 24 6 1.2874 -4.7787 5.6884 25 6 1.2629 -5.4777 4.4976 26 6 -0.3922 -3.5279 1.6013 27 6 0.2403 -2.3601 1.2407 28 1 -0.4850 0.8401 0.0004 29 1 2.6659 -3.6951 -0.7534 30 1 1.5177 -5.7589 -0.0786 31 1 0.5406 -7.7014 2.8272 32 1 -1.9126 -6.6386 4.6303 33 1 -1.8540 -5.3985 6.7553 34 1 2.1824 -4.2532 5.9870 35 1 2.1379 -5.4987 3.8649 36 1 -1.2504 -3.4949 2.2561 37 1 -0.1198 -1.4118 1.6115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387594566.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:04 Heat of formation + Delta-G solvation = -53.203446 kcal Electronic energy + Delta-G solvation = -27539.207068 eV Core-core repulsion = 23375.588139 eV Total energy + Delta-G solvation = -4163.618929 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.27183 -40.76658 -39.40916 -38.25628 -37.69533 -36.92865 -36.36721 -35.83360 -32.50463 -32.10070 -31.44558 -31.31730 -27.65978 -27.06689 -24.27538 -23.42463 -23.34271 -22.97487 -20.71258 -20.43292 -19.78067 -19.45107 -19.15356 -18.83907 -18.61909 -18.11915 -17.25951 -16.61142 -16.36359 -15.87094 -15.84997 -15.25931 -15.03034 -14.87732 -14.73608 -14.21669 -14.14260 -14.01498 -13.59036 -13.29326 -13.21598 -13.12924 -13.01596 -12.93191 -12.91222 -12.74014 -12.58536 -12.32792 -12.30635 -12.07582 -11.60747 -11.54091 -11.24493 -11.14370 -10.45284 -10.38529 -9.82086 -9.57705 -8.91539 -6.67954 -1.37494 -0.53965 -0.07697 0.22510 0.34700 0.44275 1.04023 1.34154 1.39856 1.51037 1.99725 2.09381 2.15499 2.46362 2.77327 3.34722 3.42505 3.46310 3.52131 3.68140 3.87386 4.02007 4.27217 4.29645 4.32075 4.63945 4.71010 4.78661 4.86117 4.91861 5.02992 5.06325 5.11889 5.20315 5.39695 5.49642 5.57087 5.72126 5.89991 5.95774 6.13257 6.46819 6.47499 6.65692 6.78022 8.03886 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.008561 B = 0.004224 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3269.742044 B = 6627.307659 C = 9037.494453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.036 3.964 3 Si 0.987 3.013 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.252 1.252 7 C -0.464 4.464 8 H 0.095 0.905 9 C 0.115 3.885 10 C -0.252 4.252 11 C 0.003 3.997 12 C -0.796 4.796 13 S 2.719 3.281 14 O -0.986 6.986 15 O -0.987 6.987 16 N -1.058 6.058 17 C 0.191 3.809 18 C -0.113 4.113 19 C -0.042 4.042 20 C -0.059 4.059 21 N 0.032 4.968 22 O -0.172 6.172 23 O -0.182 6.182 24 C -0.045 4.045 25 C -0.106 4.106 26 C -0.017 4.017 27 C -0.206 4.206 28 H 0.298 0.702 29 H 0.113 0.887 30 H 0.131 0.869 31 H 0.442 0.558 32 H 0.169 0.831 33 H 0.175 0.825 34 H 0.169 0.831 35 H 0.171 0.829 36 H 0.109 0.891 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.535 -9.124 8.301 12.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.184 4.184 3 Si 0.806 3.194 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.175 1.175 7 C -0.490 4.490 8 H 0.113 0.887 9 C 0.112 3.888 10 C -0.273 4.273 11 C -0.017 4.017 12 C -0.890 4.890 13 S 2.817 3.183 14 O -0.976 6.976 15 O -0.977 6.977 16 N -0.815 5.815 17 C 0.096 3.904 18 C -0.134 4.134 19 C -0.062 4.062 20 C -0.142 4.142 21 N 0.548 4.452 22 O -0.387 6.387 23 O -0.394 6.394 24 C -0.065 4.065 25 C -0.127 4.127 26 C -0.037 4.037 27 C -0.226 4.226 28 H 0.109 0.891 29 H 0.131 0.869 30 H 0.149 0.851 31 H 0.285 0.715 32 H 0.187 0.813 33 H 0.192 0.808 34 H 0.187 0.813 35 H 0.189 0.811 36 H 0.127 0.873 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.456 -9.634 7.262 12.152 hybrid contribution 0.785 1.357 0.111 1.572 sum 2.241 -8.277 7.373 11.309 Atomic orbital electron populations 1.69858 1.09487 1.31899 1.30822 1.26999 0.95464 1.05257 0.90689 0.85096 0.79405 0.75101 0.79764 1.18324 1.19064 1.17478 1.20268 0.99218 0.92136 1.37405 0.88728 1.18175 0.90323 0.93381 0.86968 1.21254 1.05417 0.92761 1.07833 1.20456 0.91419 0.98115 0.91680 1.29439 1.19039 1.15837 1.24662 1.00703 0.72966 0.72934 0.71732 1.93514 1.86756 1.63919 1.53455 1.93490 1.38991 1.84347 1.80916 1.53197 1.72766 1.33201 1.22347 1.17735 0.94164 0.92620 0.85924 1.21766 1.00019 0.99569 0.92030 1.21130 0.96645 0.91940 0.96467 1.21370 1.00065 1.05519 0.87283 1.43840 0.99786 0.99011 1.02601 1.94511 1.25880 1.66882 1.51456 1.94533 1.22567 1.44323 1.77971 1.21142 0.97584 0.95668 0.92095 1.21715 0.99983 0.95342 0.95691 1.20366 0.95794 0.91962 0.95564 1.21282 1.01117 0.96952 1.03293 0.89089 0.86899 0.85094 0.71525 0.81321 0.80808 0.81345 0.81137 0.87283 0.87887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.13 11.04 21.83 0.24 -37.89 16 2 C 0.04 1.60 5.12 85.26 0.44 2.04 16 3 Si 0.99 33.72 29.60 68.60 2.03 35.75 16 4 H -0.26 -8.52 7.11 99.48 0.71 -7.81 16 5 H -0.27 -8.83 7.11 99.48 0.71 -8.12 16 6 H -0.25 -8.34 7.11 99.48 0.71 -7.63 16 7 C -0.46 -22.10 9.05 23.46 0.21 -21.88 16 8 H 0.09 4.21 7.91 -2.91 -0.02 4.19 16 9 C 0.12 5.60 5.56 -21.29 -0.12 5.48 16 10 C -0.25 -10.99 9.80 22.73 0.22 -10.77 16 11 C 0.00 0.12 9.49 22.22 0.21 0.33 16 12 C -0.80 -30.74 5.93 22.46 0.13 -30.61 16 13 S 2.72 85.64 5.71 -56.49 -0.32 85.32 16 14 O -0.99 -34.68 17.41 -128.00 -2.23 -36.90 16 15 O -0.99 -35.28 16.09 -128.00 -2.06 -37.34 16 16 N -1.06 -22.32 5.70 -51.37 -0.29 -22.61 16 17 C 0.19 4.08 5.82 38.21 0.22 4.30 16 18 C -0.11 -2.30 9.25 22.40 0.21 -2.09 16 19 C -0.04 -0.86 9.55 22.25 0.21 -0.65 16 20 C -0.06 -1.38 6.85 36.40 0.25 -1.13 16 21 N 0.03 0.89 4.45 -46.42 -0.21 0.68 16 22 O -0.17 -4.90 18.44 18.89 0.35 -4.56 16 23 O -0.18 -5.34 18.44 18.88 0.35 -4.99 16 24 C -0.05 -0.96 9.55 22.25 0.21 -0.74 16 25 C -0.11 -2.14 9.97 22.40 0.22 -1.91 16 26 C -0.02 -0.72 9.50 22.22 0.21 -0.51 16 27 C -0.21 -10.02 8.69 22.73 0.20 -9.82 16 28 H 0.30 12.75 8.30 -92.71 -0.77 11.98 16 29 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 30 H 0.13 4.30 7.72 -2.91 -0.02 4.28 16 31 H 0.44 6.27 8.95 -96.74 -0.87 5.40 16 32 H 0.17 3.04 7.90 -2.91 -0.02 3.01 16 33 H 0.17 2.89 7.60 -2.91 -0.02 2.87 16 34 H 0.17 3.13 7.60 -2.91 -0.02 3.10 16 35 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 36 H 0.11 4.47 7.48 -2.91 -0.02 4.45 16 37 H 0.10 5.26 6.25 -2.91 -0.02 5.24 16 Total: -1.00 -63.15 348.16 0.98 -62.18 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: 0.29 Total: 28.32 kcal Atomic # 6 Polarization: -70.79 SS G_CDS: 2.83 Total: -67.96 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: -0.26 Total: -59.82 kcal Atomic # 8 Polarization: -80.19 SS G_CDS: -3.59 Total: -83.79 kcal Atomic # 14 Polarization: 33.72 SS G_CDS: 2.03 Total: 35.75 kcal Atomic # 16 Polarization: 85.64 SS G_CDS: -0.32 Total: 85.32 kcal Total: -63.15 0.98 -62.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387594566.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.972 kcal (2) G-P(sol) polarization free energy of solvation -63.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds