Wall clock time and date at job start Wed Apr 1 2020 06:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34903 * 117.00124 * 2 1 4 4 O 1.21627 * 119.99600 * 0.02562 * 3 2 1 5 5 C 1.46387 * 120.00051 * 180.02562 * 3 2 1 6 6 C 1.36759 * 125.46179 * 180.02562 * 5 3 2 7 7 C 1.37411 * 113.28685 * 179.77339 * 6 5 3 8 8 C 1.33853 * 115.11218 * 0.41993 * 7 6 5 9 9 C 1.50703 * 124.52112 * 179.85800 * 8 7 6 10 10 N 1.46498 * 109.47212 * 89.71675 * 9 8 7 11 11 S 1.65602 * 119.99612 * 164.72359 * 10 9 8 12 12 O 1.42104 * 106.40175 * 178.81816 * 11 10 9 13 13 O 1.42095 * 106.40656 * 311.73868 * 11 10 9 14 14 N 1.65599 * 107.21657 * 65.28266 * 11 10 9 15 15 C 1.46494 * 120.00381 * 89.99744 * 14 11 10 16 16 C 1.46504 * 119.99877 * 269.99379 * 14 11 10 17 17 C 1.50704 * 109.46887 * 94.99864 * 16 14 11 18 18 H 1.07997 * 119.99814 * 0.02562 * 17 16 14 19 19 C 1.37878 * 119.99679 * 180.02562 * 17 16 14 20 20 N 1.31520 * 119.99431 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00258 * 0.02562 * 19 17 16 22 22 H 1.48491 * 109.47450 * 89.99733 * 21 19 17 23 23 H 1.48506 * 109.46858 * 210.00048 * 21 19 17 24 24 H 1.48500 * 109.47256 * 329.99730 * 21 19 17 25 25 S 1.70616 * 110.96354 * 359.58813 * 8 7 6 26 26 H 1.09001 * 109.47077 * 299.99584 * 1 2 3 27 27 H 1.09005 * 109.47555 * 59.99431 * 1 2 3 28 28 H 1.08999 * 109.47276 * 179.97438 * 1 2 3 29 29 H 1.07996 * 123.35249 * 359.96752 * 6 5 3 30 30 H 1.07997 * 122.44332 * 180.25562 * 7 6 5 31 31 H 1.08996 * 109.47013 * 329.71981 * 9 8 7 32 32 H 1.08999 * 109.47128 * 209.72194 * 9 8 7 33 33 H 0.97001 * 120.00384 * 345.00836 * 10 9 8 34 34 H 1.09006 * 109.47452 * 89.99818 * 15 14 11 35 35 H 1.09002 * 109.47670 * 209.99980 * 15 14 11 36 36 H 1.09002 * 109.47109 * 329.99809 * 15 14 11 37 37 H 1.08994 * 109.47518 * 215.00154 * 16 14 11 38 38 H 1.09000 * 109.47078 * 335.00581 * 16 14 11 39 39 H 0.97006 * 119.99357 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4019 2.2220 0.0005 5 6 3.5262 1.2786 -0.0006 6 6 4.2603 2.4325 -0.0001 7 6 5.6168 2.2133 0.0042 8 6 5.9844 0.9263 -0.0018 9 6 7.4128 0.4460 -0.0018 10 7 7.8755 0.2898 1.3794 11 16 9.2530 -0.5721 1.6986 12 8 9.4447 -0.5158 3.1055 13 8 9.1395 -1.7915 0.9780 14 7 10.5172 0.2556 1.0210 15 6 11.2313 1.2692 1.8012 16 6 10.9216 -0.0260 -0.3587 17 6 10.2517 0.9532 -1.2881 18 1 9.5913 1.7097 -0.8908 19 6 10.4821 0.8831 -2.6457 20 7 9.8979 1.7379 -3.4567 21 14 11.6238 -0.4259 -3.3330 22 1 10.8413 -1.6463 -3.6541 23 1 12.2750 0.0835 -4.5666 24 1 12.6630 -0.7554 -2.3247 25 16 4.6200 -0.0982 -0.0018 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.8179 3.4176 0.0002 30 1 6.3341 3.0207 0.0091 31 1 8.0409 1.1740 -0.5152 32 1 7.4737 -0.5131 -0.5161 33 1 7.3728 0.6878 2.1073 34 1 12.0603 0.8015 2.3325 35 1 11.6166 2.0383 1.1317 36 1 10.5484 1.7221 2.5200 37 1 12.0036 0.0709 -0.4472 38 1 10.6246 -1.0405 -0.6245 39 1 10.0597 1.6883 -4.4119 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420731716.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:53:51 Heat of formation + Delta-G solvation = -118.624068 kcal Electronic energy + Delta-G solvation = -26226.838393 eV Core-core repulsion = 22195.826564 eV Total energy + Delta-G solvation = -4031.011829 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.44660 -38.19944 -36.82953 -36.50961 -35.75594 -35.38215 -34.85548 -32.56397 -30.48361 -28.52347 -28.19500 -26.17199 -25.26245 -23.37809 -22.12631 -22.01610 -19.30519 -19.05090 -18.55478 -17.58997 -17.09574 -16.99094 -16.61908 -16.54941 -16.08468 -15.78342 -15.06835 -14.56795 -14.28175 -13.94770 -13.77273 -13.62615 -13.42877 -13.06516 -12.78756 -12.63046 -12.53813 -12.45243 -12.22213 -12.04738 -11.89730 -11.62745 -11.51235 -11.45111 -11.31569 -11.03842 -10.98555 -10.81426 -10.72954 -10.56451 -10.28201 -9.76985 -9.07048 -8.89587 -8.75252 -8.59049 -8.20029 -6.27818 -4.29981 0.26347 1.12735 1.41634 1.90537 2.15629 2.48331 2.86556 3.20065 3.27291 3.30933 3.43140 4.02102 4.26004 4.64135 4.72824 4.86148 4.93842 4.96592 5.05677 5.17854 5.26293 5.31890 5.41387 5.68067 5.85551 5.92622 5.95034 6.09778 6.15270 6.20612 6.32142 6.38267 6.39312 6.75953 7.00046 7.12638 7.35701 7.44416 7.51376 8.27238 8.70456 9.32394 10.82917 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.012745 B = 0.003392 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.374601 B = 8252.608045 C = 9396.975359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.357 6.357 3 C 0.544 3.456 4 O -0.505 6.505 5 C -0.282 4.282 6 C -0.034 4.034 7 C -0.144 4.144 8 C -0.181 4.181 9 C 0.175 3.825 10 N -1.126 6.126 11 S 2.791 3.209 12 O -0.995 6.995 13 O -0.980 6.980 14 N -0.991 5.991 15 C 0.106 3.894 16 C 0.210 3.790 17 C -0.552 4.552 18 H 0.086 0.914 19 C 0.080 3.920 20 N -0.888 5.888 21 Si 0.869 3.131 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.264 1.264 25 S 0.257 5.743 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.154 0.846 30 H 0.154 0.846 31 H 0.129 0.871 32 H 0.091 0.909 33 H 0.410 0.590 34 H 0.045 0.955 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.038 0.962 38 H 0.044 0.956 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.274 -1.236 7.294 13.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.274 6.274 3 C 0.389 3.611 4 O -0.394 6.394 5 C -0.401 4.401 6 C -0.068 4.068 7 C -0.175 4.175 8 C -0.303 4.303 9 C 0.048 3.952 10 N -0.885 5.885 11 S 2.798 3.202 12 O -0.979 6.979 13 O -0.963 6.963 14 N -0.833 5.833 15 C -0.041 4.041 16 C 0.086 3.914 17 C -0.590 4.590 18 H 0.104 0.896 19 C -0.124 4.124 20 N -0.524 5.524 21 Si 0.695 3.305 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.188 1.188 25 S 0.527 5.473 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.172 0.828 30 H 0.172 0.828 31 H 0.147 0.853 32 H 0.109 0.891 33 H 0.242 0.758 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.523 -3.426 7.402 14.118 hybrid contribution 0.342 1.743 -0.561 1.863 sum -11.182 -1.683 6.841 13.216 Atomic orbital electron populations 1.23284 0.75689 1.03848 1.02681 1.86599 1.23789 1.32300 1.84663 1.19671 0.87182 0.81624 0.72623 1.90876 1.66062 1.35873 1.46637 1.23503 0.93792 0.99384 1.23410 1.20763 0.92598 0.98307 0.95146 1.20071 0.95566 0.96881 1.04958 1.24692 1.01483 0.98278 1.05840 1.20270 0.87913 1.04473 0.82550 1.56038 1.44562 1.74252 1.13643 1.01606 0.72544 0.73777 0.72291 1.93568 1.85722 1.87571 1.31057 1.93569 1.86029 1.42422 1.74296 1.57400 1.47526 1.53938 1.24435 1.21258 0.96358 0.91670 0.94789 1.19649 0.97240 0.97495 0.76984 1.21473 1.29779 1.16706 0.91063 0.89579 1.24837 0.95280 0.95458 0.96867 1.69879 1.42662 1.35865 1.04044 0.86951 0.81893 0.82479 0.79144 1.19624 1.21023 1.18809 1.83321 0.92302 1.06294 1.65416 0.91772 0.91724 0.87857 0.82850 0.82818 0.85342 0.89110 0.75764 0.93611 0.90489 0.92465 0.94406 0.93777 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.57 101.05 1.07 1.38 16 2 O -0.36 -4.20 10.42 -41.05 -0.43 -4.63 16 3 C 0.54 7.41 7.92 34.01 0.27 7.68 16 4 O -0.50 -7.75 16.64 -19.36 -0.32 -8.07 16 5 C -0.28 -3.77 6.45 -36.84 -0.24 -4.01 16 6 C -0.03 -0.43 10.01 -40.42 -0.40 -0.83 16 7 C -0.14 -1.89 9.99 -41.42 -0.41 -2.31 16 8 C -0.18 -2.58 5.68 -35.85 -0.20 -2.78 16 9 C 0.17 2.85 6.32 -5.19 -0.03 2.81 16 10 N -1.13 -17.14 6.05 -11.66 -0.07 -17.21 16 11 S 2.79 50.40 6.11 -107.50 -0.66 49.74 16 12 O -0.99 -18.86 17.21 -57.17 -0.98 -19.85 16 13 O -0.98 -20.51 16.15 -57.17 -0.92 -21.44 16 14 N -0.99 -18.38 3.23 -123.05 -0.40 -18.78 16 15 C 0.11 1.64 10.31 59.84 0.62 2.26 16 16 C 0.21 4.51 4.48 -5.19 -0.02 4.48 16 17 C -0.55 -13.14 8.62 -34.44 -0.30 -13.44 16 18 H 0.09 2.11 6.07 -52.49 -0.32 1.79 16 19 C 0.08 2.03 5.47 -17.82 -0.10 1.94 16 20 N -0.89 -23.95 13.96 55.43 0.77 -23.18 16 21 Si 0.87 19.57 27.47 -169.99 -4.67 14.90 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 25 S 0.26 3.34 22.87 -107.50 -2.46 0.88 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.15 1.89 8.06 -52.49 -0.42 1.46 16 31 H 0.13 2.38 4.86 -51.93 -0.25 2.13 16 32 H 0.09 1.58 7.74 -51.93 -0.40 1.17 16 33 H 0.41 5.21 8.64 -34.47 -0.30 4.91 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 1.18 8.07 -51.93 -0.42 0.77 16 36 H 0.06 0.78 7.79 -51.93 -0.40 0.38 16 37 H 0.04 0.80 7.17 -51.93 -0.37 0.43 16 38 H 0.04 0.99 6.34 -51.93 -0.33 0.66 16 39 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 360.34 15.07 5.43 5.43 Total: -1.00 -31.10 360.34 -8.96 -40.06 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -4.50 Total: 4.96 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: 0.24 Total: -2.82 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 0.31 Total: -59.16 kcal Atomic # 8 Polarization: -51.33 SS G_CDS: -2.66 Total: -53.99 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.67 Total: 14.90 kcal Atomic # 16 Polarization: 53.74 SS G_CDS: -3.12 Total: 50.62 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.10 -8.96 -40.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420731716.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.568 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds