Wall clock time and date at job start Wed Apr 1 2020 06:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34903 * 117.00124 * 2 1 4 4 O 1.21627 * 119.99600 * 0.02562 * 3 2 1 5 5 C 1.46387 * 120.00051 * 180.02562 * 3 2 1 6 6 C 1.36759 * 125.46179 * 180.02562 * 5 3 2 7 7 C 1.37411 * 113.28685 * 179.77339 * 6 5 3 8 8 C 1.33853 * 115.11218 * 0.41993 * 7 6 5 9 9 C 1.50703 * 124.52112 * 179.85800 * 8 7 6 10 10 N 1.46498 * 109.47212 * 89.71675 * 9 8 7 11 11 S 1.65602 * 119.99612 * 164.72359 * 10 9 8 12 12 O 1.42104 * 106.40175 * 178.81816 * 11 10 9 13 13 O 1.42095 * 106.40656 * 311.73868 * 11 10 9 14 14 N 1.65599 * 107.21657 * 65.28266 * 11 10 9 15 15 C 1.46494 * 120.00381 * 89.99744 * 14 11 10 16 16 C 1.46504 * 119.99877 * 269.99379 * 14 11 10 17 17 C 1.50704 * 109.46887 * 94.99864 * 16 14 11 18 18 H 1.07997 * 119.99814 * 0.02562 * 17 16 14 19 19 C 1.37878 * 119.99679 * 180.02562 * 17 16 14 20 20 N 1.31520 * 119.99431 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00258 * 0.02562 * 19 17 16 22 22 H 1.48491 * 109.47450 * 89.99733 * 21 19 17 23 23 H 1.48506 * 109.46858 * 210.00048 * 21 19 17 24 24 H 1.48500 * 109.47256 * 329.99730 * 21 19 17 25 25 S 1.70616 * 110.96354 * 359.58813 * 8 7 6 26 26 H 1.09001 * 109.47077 * 299.99584 * 1 2 3 27 27 H 1.09005 * 109.47555 * 59.99431 * 1 2 3 28 28 H 1.08999 * 109.47276 * 179.97438 * 1 2 3 29 29 H 1.07996 * 123.35249 * 359.96752 * 6 5 3 30 30 H 1.07997 * 122.44332 * 180.25562 * 7 6 5 31 31 H 1.08996 * 109.47013 * 329.71981 * 9 8 7 32 32 H 1.08999 * 109.47128 * 209.72194 * 9 8 7 33 33 H 0.97001 * 120.00384 * 345.00836 * 10 9 8 34 34 H 1.09006 * 109.47452 * 89.99818 * 15 14 11 35 35 H 1.09002 * 109.47670 * 209.99980 * 15 14 11 36 36 H 1.09002 * 109.47109 * 329.99809 * 15 14 11 37 37 H 1.08994 * 109.47518 * 215.00154 * 16 14 11 38 38 H 1.09000 * 109.47078 * 335.00581 * 16 14 11 39 39 H 0.97006 * 119.99357 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4019 2.2220 0.0005 5 6 3.5262 1.2786 -0.0006 6 6 4.2603 2.4325 -0.0001 7 6 5.6168 2.2133 0.0042 8 6 5.9844 0.9263 -0.0018 9 6 7.4128 0.4460 -0.0018 10 7 7.8755 0.2898 1.3794 11 16 9.2530 -0.5721 1.6986 12 8 9.4447 -0.5158 3.1055 13 8 9.1395 -1.7915 0.9780 14 7 10.5172 0.2556 1.0210 15 6 11.2313 1.2692 1.8012 16 6 10.9216 -0.0260 -0.3587 17 6 10.2517 0.9532 -1.2881 18 1 9.5913 1.7097 -0.8908 19 6 10.4821 0.8831 -2.6457 20 7 9.8979 1.7379 -3.4567 21 14 11.6238 -0.4259 -3.3330 22 1 10.8413 -1.6463 -3.6541 23 1 12.2750 0.0835 -4.5666 24 1 12.6630 -0.7554 -2.3247 25 16 4.6200 -0.0982 -0.0018 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.8179 3.4176 0.0002 30 1 6.3341 3.0207 0.0091 31 1 8.0409 1.1740 -0.5152 32 1 7.4737 -0.5131 -0.5161 33 1 7.3728 0.6878 2.1073 34 1 12.0603 0.8015 2.3325 35 1 11.6166 2.0383 1.1317 36 1 10.5484 1.7221 2.5200 37 1 12.0036 0.0709 -0.4472 38 1 10.6246 -1.0405 -0.6245 39 1 10.0597 1.6883 -4.4119 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420731716.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:53:50 Heat of formation + Delta-G solvation = -140.699718 kcal Electronic energy + Delta-G solvation = -26227.795665 eV Core-core repulsion = 22195.826564 eV Total energy + Delta-G solvation = -4031.969101 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.44454 -39.28216 -38.34673 -37.53412 -37.28780 -36.92671 -36.12536 -34.43016 -31.58598 -30.20900 -29.07786 -27.20356 -26.74375 -24.52489 -23.77416 -23.10953 -20.46785 -20.35632 -19.69800 -19.15276 -18.65522 -18.37950 -17.84276 -17.48704 -17.33078 -17.02940 -16.49627 -16.07242 -15.55697 -15.37206 -14.94835 -14.70250 -14.60041 -14.37430 -14.26133 -14.09634 -13.90681 -13.50580 -13.41885 -13.34347 -13.16982 -13.11104 -13.01671 -12.96696 -12.81756 -12.35167 -12.26283 -12.06115 -11.94947 -11.88556 -11.78770 -11.56794 -10.70351 -10.46051 -10.00977 -9.72313 -9.62598 -8.22189 -6.25458 -0.83255 -0.29878 0.34539 0.83528 1.08356 1.41362 1.46833 1.51478 1.59518 1.80479 2.01906 2.40027 2.59435 3.12867 3.34502 3.60924 3.79150 4.03276 4.04729 4.25625 4.27310 4.31957 4.49028 4.58733 4.67981 4.72874 4.80556 4.92416 4.95044 5.02298 5.07130 5.10879 5.18450 5.27373 5.39607 5.51534 5.74943 6.10888 6.36884 6.51377 6.79211 7.38787 8.90397 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.012745 B = 0.003392 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.374601 B = 8252.608045 C = 9396.975359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.546 3.454 4 O -0.526 6.526 5 C -0.289 4.289 6 C -0.033 4.033 7 C -0.136 4.136 8 C -0.201 4.201 9 C 0.183 3.817 10 N -1.112 6.112 11 S 2.805 3.195 12 O -1.001 7.001 13 O -1.009 7.009 14 N -0.996 5.996 15 C 0.096 3.904 16 C 0.214 3.786 17 C -0.537 4.537 18 H 0.074 0.926 19 C 0.033 3.967 20 N -0.927 5.927 21 Si 0.912 3.088 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.247 1.247 25 S 0.278 5.722 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.135 0.865 29 H 0.168 0.832 30 H 0.161 0.839 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.423 0.577 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.037 0.963 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.594 -1.619 8.288 14.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.278 6.278 3 C 0.391 3.609 4 O -0.418 6.418 5 C -0.408 4.408 6 C -0.067 4.067 7 C -0.168 4.168 8 C -0.323 4.323 9 C 0.056 3.944 10 N -0.874 5.874 11 S 2.812 3.188 12 O -0.985 6.985 13 O -0.992 6.992 14 N -0.837 5.837 15 C -0.049 4.049 16 C 0.089 3.911 17 C -0.576 4.576 18 H 0.092 0.908 19 C -0.168 4.168 20 N -0.567 5.567 21 Si 0.737 3.263 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.170 1.170 25 S 0.549 5.451 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.153 0.847 29 H 0.186 0.814 30 H 0.179 0.821 31 H 0.124 0.876 32 H 0.095 0.905 33 H 0.259 0.741 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.834 -3.828 8.441 15.032 hybrid contribution 0.325 1.878 -0.798 2.066 sum -11.509 -1.950 7.644 13.953 Atomic orbital electron populations 1.23642 0.73585 1.06097 1.02968 1.86591 1.25881 1.31228 1.84094 1.19705 0.87191 0.81871 0.72122 1.90862 1.66504 1.36637 1.47828 1.23685 0.94092 0.99768 1.23219 1.20908 0.92238 0.98914 0.94653 1.20176 0.96015 0.96663 1.03936 1.24532 1.00846 0.99148 1.07779 1.19948 0.89029 1.02993 0.82401 1.55720 1.43911 1.73898 1.13870 1.01065 0.72659 0.73343 0.71738 1.93556 1.85988 1.87678 1.31266 1.93531 1.86490 1.44326 1.74886 1.57353 1.48208 1.54757 1.23406 1.21505 0.97223 0.91225 0.94933 1.19454 0.97332 0.96280 0.78058 1.21695 1.28559 1.16114 0.91221 0.90785 1.25455 0.96727 0.97065 0.97503 1.69983 1.44681 1.37848 1.04163 0.86246 0.80849 0.80341 0.78878 1.19888 1.21188 1.17040 1.83201 0.91326 1.05625 1.64974 0.91396 0.91589 0.84682 0.81428 0.82108 0.87602 0.90536 0.74140 0.91906 0.90542 0.90601 0.93628 0.94540 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.57 113.37 1.20 1.62 16 2 O -0.36 -7.99 10.42 -58.17 -0.61 -8.59 16 3 C 0.55 14.25 7.92 69.94 0.55 14.81 16 4 O -0.53 -15.67 16.64 19.42 0.32 -15.35 16 5 C -0.29 -7.39 6.45 24.05 0.16 -7.23 16 6 C -0.03 -0.79 10.01 21.73 0.22 -0.57 16 7 C -0.14 -3.47 9.99 21.08 0.21 -3.26 16 8 C -0.20 -5.62 5.68 24.69 0.14 -5.48 16 9 C 0.18 5.97 6.32 85.63 0.54 6.51 16 10 N -1.11 -32.91 6.05 -190.79 -1.15 -34.06 16 11 S 2.80 98.27 6.11 -56.49 -0.35 97.93 16 12 O -1.00 -36.15 17.21 -128.00 -2.20 -38.35 16 13 O -1.01 -41.70 16.15 -128.00 -2.07 -43.77 16 14 N -1.00 -35.63 3.23 -543.22 -1.75 -37.38 16 15 C 0.10 2.80 10.31 127.77 1.32 4.11 16 16 C 0.21 8.94 4.48 85.63 0.38 9.33 16 17 C -0.54 -25.49 8.62 25.60 0.22 -25.27 16 18 H 0.07 3.66 6.07 -2.91 -0.02 3.64 16 19 C 0.03 1.67 5.47 84.65 0.46 2.13 16 20 N -0.93 -50.73 13.96 21.45 0.30 -50.43 16 21 Si 0.91 39.75 27.47 68.60 1.88 41.64 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 24 H -0.25 -9.99 6.54 99.48 0.65 -9.34 16 25 S 0.28 6.98 22.87 -56.49 -1.29 5.69 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 28 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.17 3.54 8.06 -2.91 -0.02 3.52 16 30 H 0.16 3.81 8.06 -2.91 -0.02 3.79 16 31 H 0.11 3.98 4.86 -2.39 -0.01 3.97 16 32 H 0.08 2.70 7.74 -2.39 -0.02 2.68 16 33 H 0.42 10.17 8.64 -96.74 -0.84 9.33 16 34 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.08 2.22 8.07 -2.39 -0.02 2.20 16 36 H 0.08 1.90 7.79 -2.39 -0.02 1.88 16 37 H 0.05 1.85 7.17 -2.39 -0.02 1.84 16 38 H 0.04 1.60 6.34 -2.39 -0.02 1.59 16 39 H 0.27 13.92 8.31 -92.70 -0.77 13.15 16 Total: -1.00 -65.01 360.34 -1.30 -66.31 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.22 Total: 19.67 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 5.40 Total: -3.30 kcal Atomic # 7 Polarization: -119.26 SS G_CDS: -2.61 Total: -121.87 kcal Atomic # 8 Polarization: -101.51 SS G_CDS: -4.55 Total: -106.06 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 1.88 Total: 41.64 kcal Atomic # 16 Polarization: 105.25 SS G_CDS: -1.64 Total: 103.62 kcal Total: -65.01 -1.30 -66.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420731716.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.392 kcal (2) G-P(sol) polarization free energy of solvation -65.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds