Wall clock time and date at job start Wed Apr 1 2020 04:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00206 * 2 1 4 4 H 1.48493 * 109.47350 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47008 * 299.99784 * 3 2 1 6 6 H 1.48497 * 109.47071 * 59.99349 * 3 2 1 7 7 C 1.37877 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99930 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00171 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47272 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00358 * 179.97438 * 10 9 7 12 12 O 1.21365 * 119.99720 * 0.02562 * 11 10 9 13 13 C 1.49330 * 120.00148 * 179.97438 * 11 10 9 14 14 O 1.21388 * 120.00084 * 0.02562 * 13 11 10 15 15 N 1.34779 * 119.99588 * 180.02562 * 13 11 10 16 16 C 1.39879 * 119.99586 * 185.53579 * 15 13 11 17 17 C 1.38790 * 120.09186 * 24.81742 * 16 15 13 18 18 C 1.38266 * 119.96829 * 180.02562 * 17 16 15 19 19 Cl 1.73594 * 119.92858 * 180.02562 * 18 17 16 20 20 C 1.38403 * 120.14400 * 0.02562 * 18 17 16 21 21 C 1.38236 * 120.18620 * 0.25952 * 20 18 17 22 22 C 1.38550 * 120.02776 * 359.44899 * 21 20 18 23 23 O 1.35978 * 120.07335 * 180.27253 * 22 21 20 24 24 C 1.42899 * 117.00076 * 0.29896 * 23 22 21 25 25 F 1.39898 * 109.46973 * 299.99731 * 24 23 22 26 26 F 1.39901 * 109.47537 * 59.99780 * 24 23 22 27 27 H 0.97000 * 120.00166 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.46909 * 59.99952 * 9 7 2 29 29 H 1.09004 * 109.47328 * 299.99842 * 9 7 2 30 30 H 0.97006 * 119.99483 * 0.02562 * 10 9 7 31 31 H 0.96994 * 120.00153 * 5.53557 * 15 13 11 32 32 H 1.08005 * 120.01743 * 0.04745 * 17 16 15 33 33 H 1.08000 * 119.90834 * 179.97438 * 20 18 17 34 34 H 1.08003 * 119.98788 * 179.69508 * 21 20 18 35 35 H 1.09002 * 109.47030 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5605 -5.1052 0.0011 13 6 2.7241 -6.0184 0.0005 14 8 3.9175 -5.7966 0.0000 15 7 2.2747 -7.2891 0.0005 16 6 3.1784 -8.3504 0.1168 17 6 4.4085 -8.1532 0.7287 18 6 5.3000 -9.2039 0.8418 19 17 6.8379 -8.9562 1.6080 20 6 4.9690 -10.4528 0.3456 21 6 3.7480 -10.6547 -0.2702 22 6 2.8465 -9.6086 -0.3823 23 8 1.6429 -9.8076 -0.9829 24 6 1.3707 -11.1230 -1.4704 25 9 2.3303 -11.4740 -2.4260 26 9 1.4158 -12.0326 -0.4084 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6239 -2.5568 0.8903 30 1 3.1566 -3.4354 0.0009 31 1 1.3248 -7.4676 -0.0802 32 1 4.6690 -7.1795 1.1166 33 1 5.6684 -11.2708 0.4356 34 1 3.4949 -11.6294 -0.6607 35 1 0.3805 -11.1441 -1.9256 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425776234.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:26 Heat of formation + Delta-G solvation = -188.696459 kcal Electronic energy + Delta-G solvation = -27285.171011 eV Core-core repulsion = 22559.403427 eV Total energy + Delta-G solvation = -4725.767583 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.052 amu Computer time = 12.26 seconds Orbital eigenvalues (eV) -49.81557 -47.79659 -41.27686 -39.92545 -38.38032 -37.80250 -36.53088 -35.30292 -34.26570 -32.42147 -30.78573 -30.06062 -27.80071 -26.57584 -25.12470 -23.46983 -22.76253 -21.83675 -20.06461 -19.60929 -19.01624 -18.44702 -18.36414 -17.56885 -16.84711 -16.29889 -15.98685 -15.83157 -15.46027 -15.22755 -15.12873 -14.89600 -14.46750 -14.29592 -14.24290 -14.13264 -13.81693 -13.52188 -13.36806 -13.26155 -13.10058 -12.42825 -12.14083 -12.10212 -11.98720 -11.64714 -11.37123 -11.10884 -10.98701 -10.96979 -10.71755 -10.35791 -9.50287 -9.26049 -8.98220 -8.87749 -8.32068 -8.16431 -6.25418 -4.32846 0.62607 0.76754 1.70478 1.82937 2.02126 2.46867 2.98558 3.13187 3.20892 3.28624 3.32469 3.56443 3.81983 3.91624 4.16407 4.28532 4.31082 4.43146 4.73939 4.88971 4.98668 5.11675 5.21642 5.29083 5.64206 5.79584 5.89830 6.09346 6.52643 6.86375 7.02032 7.10552 7.31490 7.49600 7.69664 7.82669 8.30260 8.49359 8.78083 9.33738 10.84673 Molecular weight = 348.05amu Principal moments of inertia in cm(-1) A = 0.013478 B = 0.002498 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.017015 B =11207.833163 C =12973.309827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.246 3.754 10 N -0.668 5.668 11 C 0.493 3.507 12 O -0.533 6.533 13 C 0.510 3.490 14 O -0.500 6.500 15 N -0.640 5.640 16 C 0.158 3.842 17 C -0.095 4.095 18 C -0.034 4.034 19 Cl -0.059 7.059 20 C -0.093 4.093 21 C -0.157 4.157 22 C 0.080 3.920 23 O -0.317 6.317 24 C 0.414 3.586 25 F -0.197 7.197 26 F -0.197 7.197 27 H 0.267 0.733 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.405 0.595 31 H 0.430 0.570 32 H 0.169 0.831 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.174 -25.487 -1.045 26.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.585 4.585 8 H 0.085 0.915 9 C 0.126 3.874 10 N -0.317 5.317 11 C 0.271 3.729 12 O -0.412 6.412 13 C 0.293 3.707 14 O -0.373 6.373 15 N -0.287 5.287 16 C 0.062 3.938 17 C -0.116 4.116 18 C -0.062 4.062 19 Cl -0.030 7.030 20 C -0.113 4.113 21 C -0.176 4.176 22 C 0.034 3.966 23 O -0.235 6.235 24 C 0.324 3.676 25 F -0.179 7.179 26 F -0.179 7.179 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.240 0.760 31 H 0.269 0.731 32 H 0.186 0.814 33 H 0.159 0.841 34 H 0.164 0.836 35 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 5.969 -25.088 -0.999 25.807 hybrid contribution 0.622 0.541 -0.041 0.826 sum 6.591 -24.547 -1.040 25.438 Atomic orbital electron populations 1.69971 1.06122 1.27454 1.48658 1.24938 0.94953 0.99551 0.94429 0.86306 0.79941 0.82604 0.77801 1.19469 1.20718 1.20717 1.21234 0.93563 0.90036 1.53647 0.91453 1.19379 0.88118 0.81406 0.98480 1.46436 1.12813 1.04878 1.67592 1.19550 0.87981 0.84404 0.80983 1.90751 1.15608 1.84443 1.50359 1.21015 0.89433 0.84066 0.76197 1.90713 1.16341 1.84507 1.45755 1.43103 1.11500 1.03689 1.70402 1.16857 0.91965 0.85078 0.99924 1.21229 0.91320 1.00822 0.98203 1.20649 0.89136 0.94664 1.01718 1.98381 1.27778 1.97055 1.79826 1.20816 0.96570 0.95938 0.97972 1.21260 0.94355 0.98528 1.03464 1.18530 0.85936 0.94033 0.98068 1.86619 1.34087 1.30651 1.72106 1.23422 0.92978 0.74628 0.76600 1.93109 1.68350 1.91802 1.64605 1.93108 1.97184 1.68533 1.59094 0.92345 0.94621 0.94604 0.75997 0.73140 0.81372 0.84105 0.83626 0.79773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.20 13.29 55.43 0.74 -24.46 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.91 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.55 -14.44 9.28 -34.44 -0.32 -14.76 16 8 H 0.07 1.69 7.60 -52.48 -0.40 1.29 16 9 C 0.25 6.21 5.43 -5.19 -0.03 6.19 16 10 N -0.67 -13.92 5.54 -61.95 -0.34 -14.26 16 11 C 0.49 9.50 7.89 -11.64 -0.09 9.40 16 12 O -0.53 -11.37 16.48 5.48 0.09 -11.28 16 13 C 0.51 8.27 7.69 -11.64 -0.09 8.18 16 14 O -0.50 -8.54 13.64 5.46 0.07 -8.47 16 15 N -0.64 -8.74 5.27 -10.19 -0.05 -8.80 16 16 C 0.16 2.02 6.44 -83.56 -0.54 1.48 16 17 C -0.09 -1.22 8.49 -39.37 -0.33 -1.56 16 18 C -0.03 -0.38 6.32 -39.51 -0.25 -0.63 16 19 Cl -0.06 -0.63 28.95 -51.86 -1.50 -2.13 16 20 C -0.09 -0.88 9.82 -39.52 -0.39 -1.27 16 21 C -0.16 -1.50 8.26 -39.47 -0.33 -1.83 16 22 C 0.08 0.88 6.50 -39.05 -0.25 0.62 16 23 O -0.32 -2.94 9.85 -19.67 -0.19 -3.13 16 24 C 0.41 2.51 5.98 101.05 0.60 3.11 16 25 F -0.20 -1.49 15.57 2.25 0.04 -1.45 16 26 F -0.20 -1.42 15.60 2.25 0.04 -1.39 16 27 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.41 7.79 7.79 -40.82 -0.32 7.47 16 31 H 0.43 5.39 7.82 -40.82 -0.32 5.07 16 32 H 0.17 2.38 5.79 -52.48 -0.30 2.08 16 33 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.15 1.19 5.09 -52.48 -0.27 0.92 16 35 H 0.19 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 337.47 15.07 5.09 5.09 Total: -1.00 -30.86 337.47 -5.60 -36.46 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -2.43 Total: 7.74 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: -2.11 Total: 10.60 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.34 Total: -47.52 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.03 Total: -22.88 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.07 Total: -2.84 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.86 -5.60 -36.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425776234.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.235 kcal (2) G-P(sol) polarization free energy of solvation -30.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.26 seconds