Wall clock time and date at job start Wed Apr 1 2020 04:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00206 * 2 1 4 4 H 1.48493 * 109.47350 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47008 * 299.99784 * 3 2 1 6 6 H 1.48497 * 109.47071 * 59.99349 * 3 2 1 7 7 C 1.37877 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99930 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00171 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47272 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00358 * 179.97438 * 10 9 7 12 12 O 1.21365 * 119.99720 * 0.02562 * 11 10 9 13 13 C 1.49330 * 120.00148 * 179.97438 * 11 10 9 14 14 O 1.21388 * 120.00084 * 0.02562 * 13 11 10 15 15 N 1.34779 * 119.99588 * 180.02562 * 13 11 10 16 16 C 1.39879 * 119.99586 * 185.53579 * 15 13 11 17 17 C 1.38790 * 120.09186 * 24.81742 * 16 15 13 18 18 C 1.38266 * 119.96829 * 180.02562 * 17 16 15 19 19 Cl 1.73594 * 119.92858 * 180.02562 * 18 17 16 20 20 C 1.38403 * 120.14400 * 0.02562 * 18 17 16 21 21 C 1.38236 * 120.18620 * 0.25952 * 20 18 17 22 22 C 1.38550 * 120.02776 * 359.44899 * 21 20 18 23 23 O 1.35978 * 120.07335 * 180.27253 * 22 21 20 24 24 C 1.42899 * 117.00076 * 0.29896 * 23 22 21 25 25 F 1.39898 * 109.46973 * 299.99731 * 24 23 22 26 26 F 1.39901 * 109.47537 * 59.99780 * 24 23 22 27 27 H 0.97000 * 120.00166 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.46909 * 59.99952 * 9 7 2 29 29 H 1.09004 * 109.47328 * 299.99842 * 9 7 2 30 30 H 0.97006 * 119.99483 * 0.02562 * 10 9 7 31 31 H 0.96994 * 120.00153 * 5.53557 * 15 13 11 32 32 H 1.08005 * 120.01743 * 0.04745 * 17 16 15 33 33 H 1.08000 * 119.90834 * 179.97438 * 20 18 17 34 34 H 1.08003 * 119.98788 * 179.69508 * 21 20 18 35 35 H 1.09002 * 109.47030 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5605 -5.1052 0.0011 13 6 2.7241 -6.0184 0.0005 14 8 3.9175 -5.7966 0.0000 15 7 2.2747 -7.2891 0.0005 16 6 3.1784 -8.3504 0.1168 17 6 4.4085 -8.1532 0.7287 18 6 5.3000 -9.2039 0.8418 19 17 6.8379 -8.9562 1.6080 20 6 4.9690 -10.4528 0.3456 21 6 3.7480 -10.6547 -0.2702 22 6 2.8465 -9.6086 -0.3823 23 8 1.6429 -9.8076 -0.9829 24 6 1.3707 -11.1230 -1.4704 25 9 2.3303 -11.4740 -2.4260 26 9 1.4158 -12.0326 -0.4084 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6239 -2.5568 0.8903 30 1 3.1566 -3.4354 0.0009 31 1 1.3248 -7.4676 -0.0802 32 1 4.6690 -7.1795 1.1166 33 1 5.6684 -11.2708 0.4356 34 1 3.4949 -11.6294 -0.6607 35 1 0.3805 -11.1441 -1.9256 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425776234.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:25 Heat of formation + Delta-G solvation = -210.718640 kcal Electronic energy + Delta-G solvation = -27286.125964 eV Core-core repulsion = 22559.403427 eV Total energy + Delta-G solvation = -4726.722537 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.052 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.33825 -48.32305 -42.40250 -41.06109 -39.71935 -38.73189 -37.42741 -36.66810 -35.85103 -34.37703 -31.67904 -30.98071 -29.70537 -27.16790 -26.58453 -24.79910 -23.80939 -23.17250 -21.51825 -20.57927 -19.95382 -19.46255 -18.91924 -18.51157 -18.32645 -17.62090 -17.32672 -17.01510 -16.78168 -16.48496 -16.20335 -16.02519 -15.66028 -15.40859 -15.09592 -14.98845 -14.80990 -14.66298 -14.26028 -14.14768 -14.09400 -13.98161 -13.90732 -13.21856 -12.98804 -12.88971 -12.76564 -12.71227 -12.44495 -12.22225 -11.99372 -11.65481 -11.50242 -10.85902 -10.75392 -10.07845 -9.90253 -9.23015 -8.31689 -6.47439 -0.35435 -0.10944 0.40871 0.96271 1.13723 1.43915 1.44450 1.45951 1.58860 1.97384 2.34792 2.35930 2.49746 2.58898 3.04065 3.34558 3.42521 3.52407 3.67344 3.74538 3.91819 4.01118 4.32816 4.41342 4.83261 4.90167 4.97605 5.00553 5.17315 5.19901 5.23342 5.48951 5.68020 5.76884 5.82261 6.35869 6.55804 6.65808 6.96398 7.25465 8.80146 Molecular weight = 348.05amu Principal moments of inertia in cm(-1) A = 0.013478 B = 0.002498 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.017015 B =11207.833163 C =12973.309827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.011 3.989 3 Si 0.981 3.019 4 H -0.258 1.258 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.561 4.561 8 H 0.080 0.920 9 C 0.263 3.737 10 N -0.670 5.670 11 C 0.496 3.504 12 O -0.554 6.554 13 C 0.521 3.479 14 O -0.509 6.509 15 N -0.626 5.626 16 C 0.131 3.869 17 C -0.105 4.105 18 C -0.044 4.044 19 Cl -0.056 7.056 20 C -0.078 4.078 21 C -0.155 4.155 22 C 0.087 3.913 23 O -0.327 6.327 24 C 0.409 3.591 25 F -0.205 7.205 26 F -0.203 7.203 27 H 0.271 0.729 28 H 0.007 0.993 29 H 0.007 0.993 30 H 0.414 0.586 31 H 0.434 0.566 32 H 0.152 0.848 33 H 0.170 0.830 34 H 0.164 0.836 35 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.379 -27.030 -1.462 28.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.189 4.189 3 Si 0.805 3.195 4 H -0.182 1.182 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.598 4.598 8 H 0.098 0.902 9 C 0.141 3.859 10 N -0.320 5.320 11 C 0.276 3.724 12 O -0.434 6.434 13 C 0.304 3.696 14 O -0.384 6.384 15 N -0.272 5.272 16 C 0.035 3.965 17 C -0.126 4.126 18 C -0.071 4.071 19 Cl -0.027 7.027 20 C -0.097 4.097 21 C -0.175 4.175 22 C 0.041 3.959 23 O -0.245 6.245 24 C 0.320 3.680 25 F -0.187 7.187 26 F -0.185 7.185 27 H 0.080 0.920 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.250 0.750 31 H 0.274 0.726 32 H 0.169 0.831 33 H 0.187 0.813 34 H 0.182 0.818 35 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 7.193 -26.697 -1.416 27.685 hybrid contribution 0.215 0.814 0.080 0.846 sum 7.409 -25.883 -1.337 26.956 Atomic orbital electron populations 1.70099 1.07939 1.28664 1.49595 1.25938 0.95790 1.03499 0.93716 0.85156 0.78974 0.77587 0.77823 1.18181 1.20274 1.20293 1.21593 0.94290 0.90538 1.53422 0.90214 1.18859 0.88297 0.82992 0.95737 1.46150 1.12536 1.04749 1.68583 1.20030 0.88269 0.84723 0.79412 1.90730 1.16945 1.84916 1.50814 1.20150 0.88350 0.84083 0.77055 1.90723 1.16196 1.84655 1.46810 1.42876 1.12013 1.02990 1.69333 1.16948 0.92079 0.85416 1.02029 1.21136 0.91958 1.00735 0.98760 1.20718 0.89126 0.94967 1.02326 1.98381 1.27440 1.97114 1.79808 1.21159 0.96759 0.95856 0.95937 1.21514 0.94040 0.98835 1.03061 1.18607 0.86735 0.93439 0.97123 1.86636 1.33168 1.32857 1.71793 1.24271 0.94468 0.73103 0.76148 1.93093 1.69016 1.91746 1.64813 1.93096 1.97226 1.68615 1.59559 0.92042 0.97516 0.97528 0.74951 0.72600 0.83105 0.81277 0.81847 0.74955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.73 13.29 21.45 0.28 -53.45 16 2 C 0.01 0.60 5.46 84.65 0.46 1.06 16 3 Si 0.98 41.87 29.54 68.60 2.03 43.90 16 4 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 5 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.56 -30.00 9.28 25.60 0.24 -29.76 16 8 H 0.08 3.98 7.60 -2.91 -0.02 3.95 16 9 C 0.26 13.81 5.43 85.63 0.46 14.27 16 10 N -0.67 -28.70 5.54 -468.26 -2.59 -31.30 16 11 C 0.50 19.60 7.89 87.23 0.69 20.29 16 12 O -0.55 -24.36 16.48 -3.29 -0.05 -24.41 16 13 C 0.52 17.09 7.69 87.23 0.67 17.76 16 14 O -0.51 -17.52 13.64 -3.36 -0.05 -17.57 16 15 N -0.63 -17.00 5.27 -304.50 -1.60 -18.60 16 16 C 0.13 3.24 6.44 38.26 0.25 3.49 16 17 C -0.11 -2.66 8.49 22.41 0.19 -2.47 16 18 C -0.04 -0.92 6.32 22.32 0.14 -0.78 16 19 Cl -0.06 -1.13 28.95 -2.72 -0.08 -1.21 16 20 C -0.08 -1.27 9.82 22.31 0.22 -1.06 16 21 C -0.16 -2.60 8.26 22.34 0.18 -2.41 16 22 C 0.09 1.76 6.50 22.62 0.15 1.91 16 23 O -0.33 -5.41 9.85 -93.30 -0.92 -6.33 16 24 C 0.41 3.80 5.98 113.37 0.68 4.48 16 25 F -0.20 -2.56 15.57 44.97 0.70 -1.86 16 26 F -0.20 -2.39 15.60 44.97 0.70 -1.68 16 27 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 28 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 30 H 0.41 16.16 7.79 -92.70 -0.72 15.43 16 31 H 0.43 10.81 7.82 -92.71 -0.73 10.09 16 32 H 0.15 4.34 5.79 -2.91 -0.02 4.32 16 33 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 34 H 0.16 2.15 5.09 -2.91 -0.01 2.14 16 35 H 0.23 -0.19 8.14 -2.39 -0.02 -0.21 16 Total: -1.00 -67.62 337.47 2.51 -65.10 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -0.23 Total: 20.62 kcal Atomic # 6 Polarization: 22.44 SS G_CDS: 4.33 Total: 26.77 kcal Atomic # 7 Polarization: -99.43 SS G_CDS: -3.91 Total: -103.34 kcal Atomic # 8 Polarization: -47.29 SS G_CDS: -1.02 Total: -48.31 kcal Atomic # 9 Polarization: -4.94 SS G_CDS: 1.40 Total: -3.54 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.21 kcal Total: -67.62 2.51 -65.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425776234.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.615 kcal (2) G-P(sol) polarization free energy of solvation -67.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds