Wall clock time and date at job start Wed Apr 1 2020 06:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47288 * 2 1 4 4 N 1.46492 * 109.47231 * 184.90388 * 3 2 1 5 5 C 1.36876 * 120.00281 * 95.66444 * 4 3 2 6 6 H 1.08007 * 119.99806 * 228.66462 * 5 4 3 7 7 C 1.39004 * 120.00468 * 48.38138 * 5 4 3 8 8 N 1.31397 * 120.00156 * 200.72849 * 7 5 4 9 9 Si 1.86802 * 119.99664 * 20.72550 * 7 5 4 10 10 H 1.48504 * 109.46712 * 92.92405 * 9 7 5 11 11 H 1.48491 * 109.47459 * 212.92767 * 9 7 5 12 12 H 1.48505 * 109.47004 * 332.92974 * 9 7 5 13 13 C 1.34785 * 119.99907 * 275.65596 * 4 3 2 14 14 O 1.21754 * 119.99943 * 356.32105 * 13 4 3 15 15 C 1.46413 * 119.99670 * 176.32465 * 13 4 3 16 16 C 1.36854 * 125.42684 * 186.22773 * 15 13 4 17 17 C 1.37694 * 113.24297 * 179.79753 * 16 15 13 18 18 O 1.36203 * 122.49938 * 180.21751 * 17 16 15 19 19 C 1.42902 * 116.99872 * 0.29557 * 18 17 16 20 20 C 1.34129 * 115.00421 * 0.49402 * 17 16 15 21 21 S 1.76193 * 124.50986 * 179.72788 * 20 17 16 22 22 N 1.65606 * 107.22127 * 179.97438 * 21 20 17 23 23 O 1.42096 * 106.40412 * 293.51298 * 21 20 17 24 24 O 1.42102 * 106.40507 * 66.43186 * 21 20 17 25 25 S 1.70605 * 110.98311 * 359.72474 * 20 17 16 26 26 H 1.08999 * 109.47016 * 184.88340 * 1 2 3 27 27 H 1.08999 * 109.47324 * 304.88426 * 1 2 3 28 28 H 1.09007 * 109.47193 * 64.88127 * 1 2 3 29 29 H 1.09005 * 109.47179 * 240.00529 * 2 1 3 30 30 H 1.08999 * 109.47655 * 120.00017 * 2 1 3 31 31 H 1.09007 * 109.46739 * 64.90199 * 3 2 1 32 32 H 1.09000 * 109.47264 * 304.91050 * 3 2 1 33 33 H 0.97000 * 119.99769 * 179.97438 * 8 7 5 34 34 H 1.08002 * 123.38209 * 359.97438 * 16 15 13 35 35 H 1.09004 * 109.46799 * 179.97438 * 19 18 17 36 36 H 1.08996 * 109.47097 * 299.99740 * 19 18 17 37 37 H 1.09000 * 109.47178 * 60.00404 * 19 18 17 38 38 H 0.96993 * 120.00101 * 150.00143 * 22 21 20 39 39 H 0.96997 * 119.99473 * 330.00092 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5002 1.4442 -0.1181 5 6 4.0874 1.5956 -1.3451 6 1 4.8707 0.9200 -1.6559 7 6 3.6718 2.6150 -2.1937 8 7 3.9120 2.5355 -3.4831 9 14 2.7716 4.0980 -1.5010 10 1 3.7499 5.1727 -1.1957 11 1 1.7893 4.5916 -2.4992 12 1 2.0600 3.7085 -0.2570 13 6 4.2654 1.2969 0.9817 14 8 3.7454 1.2297 2.0806 15 6 5.7218 1.2178 0.8548 16 6 6.5936 0.9493 1.8750 17 6 7.9106 0.9310 1.4738 18 8 8.9347 0.6783 2.3354 19 6 8.5879 0.4212 3.6977 20 6 8.1103 1.1863 0.1722 21 16 9.6910 1.2328 -0.6048 22 7 9.4410 1.5816 -2.2043 23 8 10.3766 2.3485 -0.0533 24 8 10.2003 -0.0930 -0.5582 25 16 6.6302 1.4598 -0.6308 26 1 -0.3633 -1.0239 0.0875 27 1 -0.3634 0.5877 0.8430 28 1 -0.3634 0.4363 -0.9305 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.7501 1.9304 0.9307 32 1 1.6067 1.9812 -0.8427 33 1 3.6215 3.2468 -4.0753 34 1 6.2798 0.7671 2.8923 35 1 9.4941 0.2356 4.2744 36 1 8.0656 1.2849 4.1089 37 1 7.9397 -0.4537 3.7486 38 1 10.1146 2.0667 -2.7060 39 1 8.6208 1.3009 -2.6394 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447429132.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:29:15 Heat of formation + Delta-G solvation = -114.331255 kcal Electronic energy + Delta-G solvation = -27101.587418 eV Core-core repulsion = 23070.761740 eV Total energy + Delta-G solvation = -4030.825679 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 6.66 seconds Orbital eigenvalues (eV) -39.74242 -39.07839 -36.68094 -35.91272 -35.44472 -35.01395 -33.44428 -33.04350 -32.13238 -29.89865 -27.14032 -26.26708 -25.64727 -23.90799 -21.58313 -20.38795 -20.04848 -19.03219 -18.69613 -17.44284 -16.93985 -16.76297 -16.29790 -16.03379 -15.77417 -15.51606 -15.13795 -14.89932 -14.59204 -14.31012 -14.27222 -13.52358 -13.32541 -12.99219 -12.88837 -12.45848 -12.38631 -11.87774 -11.83944 -11.74475 -11.72028 -11.67274 -11.61609 -11.31351 -11.22756 -11.00734 -10.88455 -10.70816 -10.35076 -10.30261 -10.12380 -9.99594 -9.58571 -9.11766 -8.71676 -8.07618 -7.62698 -7.04235 -4.77499 0.70894 0.79715 2.02665 2.35034 2.64360 2.85351 2.96315 3.01831 3.49903 3.59462 3.72865 3.80995 3.92474 3.95543 4.45762 5.12557 5.26511 5.30510 5.34511 5.42745 5.45354 5.50938 5.60920 5.71256 5.83152 5.93421 6.14116 6.15672 6.18171 6.25500 6.29314 6.49811 6.59086 6.67980 6.94770 7.18391 7.31765 7.49098 7.64137 8.37024 8.78917 9.18187 9.99158 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.013310 B = 0.004607 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.208001 B = 6076.746266 C = 7335.363081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.136 4.136 3 C 0.115 3.885 4 N -0.452 5.452 5 C -0.361 4.361 6 H 0.114 0.886 7 C 0.090 3.910 8 N -0.817 5.817 9 Si 0.866 3.134 10 H -0.266 1.266 11 H -0.273 1.273 12 H -0.245 1.245 13 C 0.538 3.462 14 O -0.576 6.576 15 C -0.154 4.154 16 C -0.186 4.186 17 C 0.226 3.774 18 O -0.315 6.315 19 C 0.028 3.972 20 C -0.941 4.941 21 S 2.745 3.255 22 N -1.251 6.251 23 O -0.966 6.966 24 O -0.963 6.963 25 S 0.404 5.596 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.287 0.713 34 H 0.154 0.846 35 H 0.100 0.900 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.420 0.580 39 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.938 -1.132 1.914 2.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C -0.008 4.008 4 N -0.171 5.171 5 C -0.496 4.496 6 H 0.130 0.870 7 C -0.127 4.127 8 N -0.446 5.446 9 Si 0.689 3.311 10 H -0.191 1.191 11 H -0.198 1.198 12 H -0.168 1.168 13 C 0.328 3.672 14 O -0.462 6.462 15 C -0.279 4.279 16 C -0.222 4.222 17 C 0.165 3.835 18 O -0.229 6.229 19 C -0.067 4.067 20 C -1.143 5.143 21 S 2.830 3.170 22 N -0.926 5.926 23 O -0.956 6.956 24 O -0.953 6.953 25 S 0.680 5.320 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.171 0.829 35 H 0.118 0.882 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.250 0.750 39 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 2.463 -0.943 1.300 2.940 hybrid contribution -0.998 0.533 1.411 1.809 sum 1.465 -0.410 2.711 3.108 Atomic orbital electron populations 1.21687 0.95974 1.01234 1.01509 1.21835 0.95225 0.97817 1.02582 1.21804 0.80952 0.96483 1.01534 1.43587 1.04624 1.63000 1.05922 1.18926 1.22223 1.16386 0.92084 0.86995 1.25536 0.95126 0.97540 0.94450 1.69739 1.39827 1.32560 1.02484 0.87059 0.80697 0.82362 0.80943 1.19094 1.19796 1.16805 1.17236 0.84182 0.81312 0.84515 1.90715 1.73551 1.55953 1.25951 1.24835 0.98389 1.06083 0.98575 1.20545 0.90479 1.10076 1.01083 1.16566 0.86873 0.92811 0.87268 1.86111 1.31675 1.85092 1.20028 1.23097 1.02800 1.01117 0.79663 1.34854 1.33688 1.35332 1.10387 1.00183 0.71637 0.73747 0.71422 1.53127 1.31981 1.76281 1.31212 1.93549 1.71477 1.53391 1.77178 1.93566 1.76695 1.39218 1.85800 1.84474 0.84280 1.58948 1.04281 0.92940 0.92971 0.92808 0.91197 0.91998 0.91193 0.90932 0.90211 0.82863 0.88160 0.92267 0.92276 0.75020 0.75474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 37.15 0.37 -1.62 16 2 C -0.14 -2.31 6.22 -26.73 -0.17 -2.47 16 3 C 0.11 2.22 3.35 -4.04 -0.01 2.21 16 4 N -0.45 -9.69 1.95 -116.38 -0.23 -9.91 16 5 C -0.36 -7.91 7.29 -15.02 -0.11 -8.02 16 6 H 0.11 2.49 5.46 -30.51 -0.17 2.32 16 7 C 0.09 1.96 5.21 -17.45 -0.09 1.87 16 8 N -0.82 -18.27 13.96 55.50 0.77 -17.50 16 9 Si 0.87 17.25 26.47 -169.99 -4.50 12.75 16 10 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 11 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 12 H -0.24 -4.80 5.24 56.52 0.30 -4.51 16 13 C 0.54 11.94 7.55 -12.97 -0.10 11.84 16 14 O -0.58 -13.65 16.50 5.14 0.08 -13.57 16 15 C -0.15 -3.18 6.30 -36.79 -0.23 -3.42 16 16 C -0.19 -3.55 8.96 -40.28 -0.36 -3.91 16 17 C 0.23 4.32 6.58 -41.23 -0.27 4.05 16 18 O -0.32 -5.60 10.25 -20.39 -0.21 -5.81 16 19 C 0.03 0.36 9.92 101.05 1.00 1.36 16 20 C -0.94 -17.64 6.27 29.29 0.18 -17.46 16 21 S 2.74 47.27 6.10 -107.50 -0.66 46.61 16 22 N -1.25 -15.78 9.35 60.35 0.56 -15.22 16 23 O -0.97 -18.88 18.02 -57.17 -1.03 -19.91 16 24 O -0.96 -18.91 18.02 -57.17 -1.03 -19.94 16 25 S 0.40 7.55 17.44 -107.50 -1.88 5.67 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 1.38 7.39 -51.92 -0.38 0.99 16 32 H 0.07 1.37 5.02 -51.93 -0.26 1.11 16 33 H 0.29 5.98 8.31 -40.82 -0.34 5.64 16 34 H 0.15 2.65 6.95 -52.49 -0.36 2.29 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.69 7.83 -51.93 -0.41 0.28 16 37 H 0.06 0.68 7.86 -51.93 -0.41 0.27 16 38 H 0.42 4.07 8.96 -34.47 -0.31 3.76 16 39 H 0.42 4.78 8.30 -34.47 -0.29 4.49 16 LS Contribution 350.01 15.07 5.27 5.27 Total: -1.00 -30.66 350.01 -6.98 -37.64 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -4.36 Total: 9.49 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: 0.21 Total: -15.57 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 1.11 Total: -42.63 kcal Atomic # 8 Polarization: -57.05 SS G_CDS: -2.18 Total: -59.23 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -4.50 Total: 12.75 kcal Atomic # 16 Polarization: 54.82 SS G_CDS: -2.53 Total: 52.28 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.66 -6.98 -37.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447429132.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.694 kcal (2) G-P(sol) polarization free energy of solvation -30.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.66 seconds