Wall clock time and date at job start Wed Apr 1 2020 06:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47288 * 2 1 4 4 N 1.46492 * 109.47231 * 184.90388 * 3 2 1 5 5 C 1.36876 * 120.00281 * 95.66444 * 4 3 2 6 6 H 1.08007 * 119.99806 * 228.66462 * 5 4 3 7 7 C 1.39004 * 120.00468 * 48.38138 * 5 4 3 8 8 N 1.31397 * 120.00156 * 200.72849 * 7 5 4 9 9 Si 1.86802 * 119.99664 * 20.72550 * 7 5 4 10 10 H 1.48504 * 109.46712 * 92.92405 * 9 7 5 11 11 H 1.48491 * 109.47459 * 212.92767 * 9 7 5 12 12 H 1.48505 * 109.47004 * 332.92974 * 9 7 5 13 13 C 1.34785 * 119.99907 * 275.65596 * 4 3 2 14 14 O 1.21754 * 119.99943 * 356.32105 * 13 4 3 15 15 C 1.46413 * 119.99670 * 176.32465 * 13 4 3 16 16 C 1.36854 * 125.42684 * 186.22773 * 15 13 4 17 17 C 1.37694 * 113.24297 * 179.79753 * 16 15 13 18 18 O 1.36203 * 122.49938 * 180.21751 * 17 16 15 19 19 C 1.42902 * 116.99872 * 0.29557 * 18 17 16 20 20 C 1.34129 * 115.00421 * 0.49402 * 17 16 15 21 21 S 1.76193 * 124.50986 * 179.72788 * 20 17 16 22 22 N 1.65606 * 107.22127 * 179.97438 * 21 20 17 23 23 O 1.42096 * 106.40412 * 293.51298 * 21 20 17 24 24 O 1.42102 * 106.40507 * 66.43186 * 21 20 17 25 25 S 1.70605 * 110.98311 * 359.72474 * 20 17 16 26 26 H 1.08999 * 109.47016 * 184.88340 * 1 2 3 27 27 H 1.08999 * 109.47324 * 304.88426 * 1 2 3 28 28 H 1.09007 * 109.47193 * 64.88127 * 1 2 3 29 29 H 1.09005 * 109.47179 * 240.00529 * 2 1 3 30 30 H 1.08999 * 109.47655 * 120.00017 * 2 1 3 31 31 H 1.09007 * 109.46739 * 64.90199 * 3 2 1 32 32 H 1.09000 * 109.47264 * 304.91050 * 3 2 1 33 33 H 0.97000 * 119.99769 * 179.97438 * 8 7 5 34 34 H 1.08002 * 123.38209 * 359.97438 * 16 15 13 35 35 H 1.09004 * 109.46799 * 179.97438 * 19 18 17 36 36 H 1.08996 * 109.47097 * 299.99740 * 19 18 17 37 37 H 1.09000 * 109.47178 * 60.00404 * 19 18 17 38 38 H 0.96993 * 120.00101 * 150.00143 * 22 21 20 39 39 H 0.96997 * 119.99473 * 330.00092 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5002 1.4442 -0.1181 5 6 4.0874 1.5956 -1.3451 6 1 4.8707 0.9200 -1.6559 7 6 3.6718 2.6150 -2.1937 8 7 3.9120 2.5355 -3.4831 9 14 2.7716 4.0980 -1.5010 10 1 3.7499 5.1727 -1.1957 11 1 1.7893 4.5916 -2.4992 12 1 2.0600 3.7085 -0.2570 13 6 4.2654 1.2969 0.9817 14 8 3.7454 1.2297 2.0806 15 6 5.7218 1.2178 0.8548 16 6 6.5936 0.9493 1.8750 17 6 7.9106 0.9310 1.4738 18 8 8.9347 0.6783 2.3354 19 6 8.5879 0.4212 3.6977 20 6 8.1103 1.1863 0.1722 21 16 9.6910 1.2328 -0.6048 22 7 9.4410 1.5816 -2.2043 23 8 10.3766 2.3485 -0.0533 24 8 10.2003 -0.0930 -0.5582 25 16 6.6302 1.4598 -0.6308 26 1 -0.3633 -1.0239 0.0875 27 1 -0.3634 0.5877 0.8430 28 1 -0.3634 0.4363 -0.9305 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.7501 1.9304 0.9307 32 1 1.6067 1.9812 -0.8427 33 1 3.6215 3.2468 -4.0753 34 1 6.2798 0.7671 2.8923 35 1 9.4941 0.2356 4.2744 36 1 8.0656 1.2849 4.1089 37 1 7.9397 -0.4537 3.7486 38 1 10.1146 2.0667 -2.7060 39 1 8.6208 1.3009 -2.6394 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447429132.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:29:06 Heat of formation + Delta-G solvation = -138.370790 kcal Electronic energy + Delta-G solvation = -27102.629851 eV Core-core repulsion = 23070.761740 eV Total energy + Delta-G solvation = -4031.868111 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 9.36 seconds Orbital eigenvalues (eV) -41.22052 -40.62787 -38.16167 -37.47486 -36.92870 -36.53799 -34.93235 -34.20069 -33.71471 -31.33011 -28.38384 -27.59209 -27.28954 -25.39789 -22.94479 -21.90716 -21.48617 -20.59404 -20.08371 -18.86455 -18.41584 -18.22436 -17.63116 -17.52967 -17.15437 -16.97318 -16.55891 -16.33255 -16.12810 -15.91871 -15.65180 -14.98940 -14.66085 -14.52178 -14.40050 -13.86127 -13.80589 -13.32478 -13.26129 -13.22984 -13.14651 -13.11736 -12.92788 -12.72587 -12.64224 -12.42967 -12.31569 -12.00487 -11.75944 -11.66564 -11.49931 -11.43737 -11.23947 -10.81615 -10.26513 -9.72568 -9.09846 -8.71144 -6.48412 -0.83252 -0.58722 0.52553 0.85323 1.11995 1.26816 1.37022 1.41972 2.10255 2.14218 2.18438 2.24508 2.43557 2.56413 2.79606 3.73109 3.87968 4.01507 4.08244 4.15908 4.21214 4.33882 4.40601 4.44229 4.59623 4.64945 4.68810 4.77950 4.94326 5.00712 5.14372 5.19577 5.22609 5.26645 5.45812 5.79312 5.99428 6.00810 6.25497 6.68171 7.10215 7.50549 8.34286 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.013310 B = 0.004607 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.208001 B = 6076.746266 C = 7335.363081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C 0.108 3.892 4 N -0.454 5.454 5 C -0.371 4.371 6 H 0.107 0.893 7 C 0.072 3.928 8 N -0.838 5.838 9 Si 0.896 3.104 10 H -0.274 1.274 11 H -0.261 1.261 12 H -0.244 1.244 13 C 0.531 3.469 14 O -0.600 6.600 15 C -0.187 4.187 16 C -0.176 4.176 17 C 0.216 3.784 18 O -0.331 6.331 19 C 0.014 3.986 20 C -0.947 4.947 21 S 2.764 3.236 22 N -1.233 6.233 23 O -0.989 6.989 24 O -0.987 6.987 25 S 0.425 5.575 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.293 0.707 34 H 0.167 0.833 35 H 0.131 0.869 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.435 0.565 39 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.756 -1.048 1.890 2.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.168 4.168 3 C -0.014 4.014 4 N -0.173 5.173 5 C -0.505 4.505 6 H 0.124 0.876 7 C -0.143 4.143 8 N -0.469 5.469 9 Si 0.718 3.282 10 H -0.200 1.200 11 H -0.185 1.185 12 H -0.167 1.167 13 C 0.321 3.679 14 O -0.487 6.487 15 C -0.311 4.311 16 C -0.213 4.213 17 C 0.155 3.845 18 O -0.245 6.245 19 C -0.080 4.080 20 C -1.148 5.148 21 S 2.848 3.152 22 N -0.914 5.914 23 O -0.978 6.978 24 O -0.976 6.976 25 S 0.701 5.299 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.185 0.815 35 H 0.149 0.851 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.269 0.731 39 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 2.250 -0.855 1.243 2.709 hybrid contribution -0.830 0.466 1.461 1.744 sum 1.420 -0.389 2.704 3.079 Atomic orbital electron populations 1.21660 0.93131 1.02739 1.02289 1.21762 0.97669 0.95871 1.01475 1.21958 0.79998 0.98087 1.01324 1.43714 1.05450 1.62551 1.05607 1.18946 1.22818 1.16631 0.92130 0.87640 1.25821 0.95503 0.98487 0.94475 1.69745 1.40782 1.33351 1.02980 0.86602 0.80204 0.80470 0.80904 1.19965 1.18534 1.16709 1.17468 0.84874 0.81148 0.84376 1.90679 1.74208 1.57229 1.26625 1.24886 0.98101 1.08087 1.00050 1.20716 0.90335 1.08757 1.01477 1.16705 0.87187 0.92821 0.87818 1.86105 1.31579 1.84885 1.21948 1.23520 1.04960 1.02001 0.77536 1.35083 1.34013 1.34909 1.10772 0.99471 0.70774 0.72870 0.72041 1.52710 1.32886 1.76280 1.29532 1.93517 1.72023 1.53972 1.78332 1.93540 1.77075 1.40480 1.86546 1.84235 0.83688 1.58528 1.03433 0.91091 0.92289 0.91953 0.92045 0.93277 0.91769 0.90485 0.89577 0.81538 0.85098 0.91348 0.91259 0.73065 0.74433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.91 71.98 0.71 -2.84 16 2 C -0.13 -4.31 6.22 30.59 0.19 -4.12 16 3 C 0.11 4.15 3.35 86.38 0.29 4.44 16 4 N -0.45 -19.46 1.95 -640.31 -1.25 -20.71 16 5 C -0.37 -16.17 7.29 84.09 0.61 -15.56 16 6 H 0.11 4.70 5.46 -16.88 -0.09 4.60 16 7 C 0.07 3.08 5.21 84.94 0.44 3.53 16 8 N -0.84 -36.88 13.96 21.67 0.30 -36.57 16 9 Si 0.90 34.45 26.47 68.60 1.82 36.27 16 10 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 11 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 12 H -0.24 -9.27 5.24 99.48 0.52 -8.75 16 13 C 0.53 23.66 7.55 86.37 0.65 24.31 16 14 O -0.60 -28.58 16.50 -4.52 -0.07 -28.65 16 15 C -0.19 -7.70 6.30 24.08 0.15 -7.55 16 16 C -0.18 -6.63 8.96 21.82 0.20 -6.43 16 17 C 0.22 8.08 6.58 21.20 0.14 8.22 16 18 O -0.33 -11.37 10.25 -95.87 -0.98 -12.35 16 19 C 0.01 0.32 9.92 113.37 1.13 1.45 16 20 C -0.95 -34.78 6.27 66.88 0.42 -34.36 16 21 S 2.76 92.35 6.10 -56.49 -0.34 92.01 16 22 N -1.23 -29.13 9.35 37.02 0.35 -28.78 16 23 O -0.99 -37.66 18.02 -128.00 -2.31 -39.96 16 24 O -0.99 -37.85 18.02 -128.00 -2.31 -40.16 16 25 S 0.43 15.69 17.44 -56.49 -0.99 14.70 16 26 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.06 1.47 8.14 -2.38 -0.02 1.46 16 29 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.06 2.51 7.39 -2.38 -0.02 2.49 16 32 H 0.08 2.84 5.02 -2.39 -0.01 2.82 16 33 H 0.29 11.94 8.31 -92.71 -0.77 11.17 16 34 H 0.17 5.64 6.95 -2.91 -0.02 5.62 16 35 H 0.13 2.22 8.14 -2.38 -0.02 2.20 16 36 H 0.07 1.47 7.83 -2.39 -0.02 1.45 16 37 H 0.07 1.48 7.86 -2.39 -0.02 1.46 16 38 H 0.44 7.59 8.96 -96.75 -0.87 6.72 16 39 H 0.43 9.05 8.30 -96.75 -0.80 8.24 16 Total: -1.00 -64.19 350.01 -1.65 -65.85 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: -0.80 Total: 27.28 kcal Atomic # 6 Polarization: -33.85 SS G_CDS: 4.93 Total: -28.91 kcal Atomic # 7 Polarization: -85.47 SS G_CDS: -0.60 Total: -86.07 kcal Atomic # 8 Polarization: -115.45 SS G_CDS: -5.67 Total: -121.12 kcal Atomic # 14 Polarization: 34.45 SS G_CDS: 1.82 Total: 36.27 kcal Atomic # 16 Polarization: 108.04 SS G_CDS: -1.33 Total: 106.71 kcal Total: -64.19 -1.65 -65.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447429132.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.523 kcal (2) G-P(sol) polarization free energy of solvation -64.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.36 seconds