Wall clock time and date at job start Wed Apr 1 2020 05:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00028 * 2 1 4 4 H 1.48494 * 109.46720 * 240.00140 * 3 2 1 5 5 H 1.48501 * 109.46641 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47190 * 119.99906 * 3 2 1 7 7 C 1.37875 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99886 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00211 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47090 * 180.02562 * 9 7 2 11 11 S 1.65603 * 119.99984 * 165.00410 * 10 9 7 12 12 O 1.42096 * 104.27513 * 308.92529 * 11 10 9 13 13 O 1.42098 * 104.27508 * 181.06969 * 11 10 9 14 14 C 1.81400 * 104.44946 * 64.99810 * 11 10 9 15 15 C 1.53008 * 109.46848 * 179.97438 * 14 11 10 16 16 N 1.46501 * 109.46803 * 179.97438 * 15 14 11 17 17 S 1.65601 * 119.99590 * 164.99984 * 16 15 14 18 18 O 1.42098 * 106.40290 * 311.46059 * 17 16 15 19 19 O 1.42107 * 106.39817 * 178.54092 * 17 16 15 20 20 C 1.76199 * 107.21620 * 65.00305 * 17 16 15 21 21 C 1.38237 * 119.99920 * 90.00183 * 20 17 16 22 22 C 1.38235 * 119.99712 * 180.02562 * 21 20 17 23 23 C 1.38234 * 120.00220 * 359.94731 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00031 * 269.97364 * 20 17 16 26 26 H 0.96996 * 120.00327 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46708 * 60.00537 * 9 7 2 28 28 H 1.08994 * 109.47409 * 300.00020 * 9 7 2 29 29 H 0.97003 * 120.00412 * 344.99792 * 10 9 7 30 30 H 1.08997 * 109.47270 * 60.00415 * 14 11 10 31 31 H 1.08994 * 109.47302 * 299.99828 * 14 11 10 32 32 H 1.08997 * 109.46753 * 60.00213 * 15 14 11 33 33 H 1.08994 * 109.47121 * 300.00052 * 15 14 11 34 34 H 0.97000 * 120.00223 * 345.00906 * 16 15 14 35 35 H 1.08005 * 120.00088 * 359.96860 * 21 20 17 36 36 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 37 37 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 38 38 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 39 39 H 1.07999 * 119.99990 * 0.02562 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 16 1.6881 -5.1422 0.3706 12 8 0.9853 -4.9877 1.5958 13 8 2.8645 -5.9357 0.2958 14 6 0.5439 -5.5723 -0.9698 15 6 -0.0060 -6.9813 -0.7384 16 7 -0.9305 -7.3284 -1.8205 17 16 -1.3901 -8.9037 -2.0435 18 8 -0.1972 -9.6757 -2.0284 19 8 -2.3030 -8.9050 -3.1325 20 6 -2.3119 -9.3843 -0.6209 21 6 -3.6821 -9.2038 -0.5917 22 6 -4.4052 -9.5804 0.5247 23 6 -3.7583 -10.1385 1.6113 24 6 -2.3875 -10.3145 1.5841 25 6 -1.6650 -9.9424 0.4658 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5567 -0.8904 28 1 0.6247 -2.5571 0.8896 29 1 3.1349 -3.4541 -0.2180 30 1 1.0722 -5.5409 -1.9226 31 1 -0.2798 -4.8588 -0.9873 32 1 -0.5342 -7.0132 0.2145 33 1 0.8180 -7.6946 -0.7212 34 1 -1.2733 -6.6356 -2.4065 35 1 -4.1876 -8.7677 -1.4407 36 1 -5.4756 -9.4390 0.5476 37 1 -4.3233 -10.4331 2.4833 38 1 -1.8814 -10.7465 2.4348 39 1 -0.5945 -10.0835 0.4430 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487394304.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:34 Heat of formation + Delta-G solvation = -152.336708 kcal Electronic energy + Delta-G solvation = -25777.268782 eV Core-core repulsion = 21744.795063 eV Total energy + Delta-G solvation = -4032.473719 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.04727 -38.47553 -38.13947 -37.19318 -37.06287 -36.96902 -36.43114 -34.10423 -32.30519 -32.01611 -31.34899 -28.69365 -24.65842 -24.44889 -24.23544 -23.70381 -20.85224 -20.27820 -19.37969 -19.10737 -18.63999 -18.06075 -17.42304 -17.22227 -17.04844 -17.00982 -16.58384 -16.21790 -15.97120 -15.55776 -15.46177 -15.14595 -14.52775 -14.49942 -14.06918 -14.04253 -13.88301 -13.56542 -13.38652 -13.31986 -13.26946 -13.23631 -13.15737 -13.07979 -13.02238 -12.72867 -12.54153 -12.23312 -12.07379 -11.89506 -11.79405 -11.41508 -10.81087 -10.72120 -10.43000 -10.05106 -10.03717 -8.24183 -6.34848 -0.87609 -0.59272 -0.21410 0.29432 1.46195 1.47791 1.55339 1.81088 1.92230 2.42539 2.45386 2.71738 2.79937 3.11199 3.19560 3.29600 3.32447 3.78622 3.84232 3.93197 4.10030 4.15184 4.26598 4.38117 4.44667 4.45427 4.63540 4.69848 4.82453 4.94230 5.06777 5.26230 5.30544 5.35149 5.38016 5.76192 5.85805 5.91193 6.02460 6.33993 6.79314 7.34713 8.86335 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.015792 B = 0.002531 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.630187 B =11060.245026 C =11179.093538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.011 3.989 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.551 4.551 8 H 0.070 0.930 9 C 0.251 3.749 10 N -1.107 6.107 11 S 2.623 3.377 12 O -0.992 6.992 13 O -0.987 6.987 14 C -0.630 4.630 15 C 0.116 3.884 16 N -1.101 6.101 17 S 2.712 3.288 18 O -0.981 6.981 19 O -0.979 6.979 20 C -0.689 4.689 21 C -0.036 4.036 22 C -0.146 4.146 23 C -0.063 4.063 24 C -0.147 4.147 25 C -0.044 4.044 26 H 0.268 0.732 27 H 0.026 0.974 28 H 0.013 0.987 29 H 0.416 0.584 30 H 0.169 0.831 31 H 0.158 0.842 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.433 0.567 35 H 0.148 0.852 36 H 0.158 0.842 37 H 0.161 0.839 38 H 0.156 0.844 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.276 -19.080 -0.715 20.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.190 4.190 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.590 4.590 8 H 0.089 0.911 9 C 0.126 3.874 10 N -0.868 5.868 11 S 2.717 3.283 12 O -0.982 6.982 13 O -0.977 6.977 14 C -0.762 4.762 15 C -0.012 4.012 16 N -0.864 5.864 17 S 2.804 3.196 18 O -0.971 6.971 19 O -0.969 6.969 20 C -0.779 4.779 21 C -0.055 4.055 22 C -0.165 4.165 23 C -0.081 4.081 24 C -0.165 4.165 25 C -0.063 4.063 26 H 0.077 0.923 27 H 0.044 0.956 28 H 0.031 0.969 29 H 0.251 0.749 30 H 0.187 0.813 31 H 0.176 0.824 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.271 0.729 35 H 0.166 0.834 36 H 0.175 0.825 37 H 0.178 0.822 38 H 0.174 0.826 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.084 -20.141 -0.527 21.709 hybrid contribution -0.125 1.672 -0.251 1.695 sum -8.209 -18.469 -0.778 20.226 Atomic orbital electron populations 1.70012 1.07418 1.28416 1.50452 1.25809 0.95811 1.02945 0.94394 0.85464 0.78220 0.78067 0.79054 1.18994 1.20891 1.19774 1.21615 0.94094 0.91281 1.52054 0.91138 1.18772 0.88163 0.84447 0.96034 1.55322 1.19521 1.23774 1.88161 1.04263 0.75007 0.72780 0.76250 1.93553 1.76673 1.85521 1.42492 1.93547 1.46430 1.69692 1.88067 1.30765 1.18266 1.05543 1.21662 1.21149 0.94375 0.94243 0.91467 1.55225 1.59600 1.27715 1.43853 1.01098 0.72972 0.72187 0.73345 1.93563 1.47216 1.69292 1.87063 1.93567 1.65389 1.86257 1.51703 1.30716 1.07893 1.18674 1.20585 1.21222 0.91647 0.93636 0.98991 1.21711 1.01938 0.99501 0.93318 1.21974 0.94795 0.92714 0.98641 1.21716 0.95147 1.00878 0.98797 1.21283 1.01174 0.92202 0.91688 0.92266 0.95634 0.96919 0.74929 0.81331 0.82380 0.88767 0.87948 0.72903 0.83425 0.82471 0.82170 0.82598 0.83534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.03 13.29 21.45 0.28 -50.75 16 2 C 0.01 0.56 5.46 84.65 0.46 1.02 16 3 Si 0.97 41.15 29.54 68.60 2.03 43.18 16 4 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.55 -28.38 9.27 25.60 0.24 -28.14 16 8 H 0.07 3.46 7.65 -2.91 -0.02 3.44 16 9 C 0.25 11.61 5.89 85.63 0.50 12.11 16 10 N -1.11 -40.90 5.88 -190.80 -1.12 -42.02 16 11 S 2.62 83.25 5.46 -56.49 -0.31 82.94 16 12 O -0.99 -38.92 17.50 -127.65 -2.23 -41.15 16 13 O -0.99 -34.27 18.08 -127.65 -2.31 -36.57 16 14 C -0.63 -13.79 6.21 71.98 0.45 -13.34 16 15 C 0.12 2.33 6.23 86.38 0.54 2.87 16 16 N -1.10 -19.89 6.00 -187.48 -1.12 -21.02 16 17 S 2.71 57.63 5.74 -56.49 -0.32 57.30 16 18 O -0.98 -26.03 16.75 -128.00 -2.14 -28.17 16 19 O -0.98 -24.86 17.28 -128.00 -2.21 -27.08 16 20 C -0.69 -13.28 5.95 22.27 0.13 -13.14 16 21 C -0.04 -0.61 9.52 22.27 0.21 -0.40 16 22 C -0.15 -1.95 10.05 22.27 0.22 -1.73 16 23 C -0.06 -0.76 10.05 22.27 0.22 -0.54 16 24 C -0.15 -2.07 10.05 22.27 0.22 -1.84 16 25 C -0.04 -0.79 9.52 22.27 0.21 -0.58 16 26 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 27 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.01 0.66 7.69 -2.39 -0.02 0.64 16 29 H 0.42 14.32 8.50 -96.74 -0.82 13.50 16 30 H 0.17 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.16 3.18 8.14 -2.39 -0.02 3.16 16 32 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.10 1.92 7.75 -2.39 -0.02 1.90 16 34 H 0.43 6.16 8.65 -96.74 -0.84 5.33 16 35 H 0.15 2.17 7.62 -2.91 -0.02 2.15 16 36 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 37 H 0.16 0.92 8.06 -2.91 -0.02 0.89 16 38 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 39 H 0.15 2.34 7.62 -2.91 -0.02 2.31 16 Total: -1.00 -77.58 365.55 -6.61 -84.19 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: -0.56 Total: 22.86 kcal Atomic # 6 Polarization: -47.13 SS G_CDS: 3.42 Total: -43.71 kcal Atomic # 7 Polarization: -111.82 SS G_CDS: -1.96 Total: -113.78 kcal Atomic # 8 Polarization: -124.08 SS G_CDS: -8.90 Total: -132.98 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Atomic # 16 Polarization: 140.88 SS G_CDS: -0.63 Total: 140.24 kcal Total: -77.58 -6.61 -84.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487394304.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.147 kcal (2) G-P(sol) polarization free energy of solvation -77.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds