Wall clock time and date at job start Wed Apr 1 2020 06:53:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17398 * 1
3 3 C 1.47203 * 179.97438 * 2 1
4 4 N 1.46498 * 109.47030 * 219.59767 * 3 2 1
5 5 C 1.36932 * 120.00350 * 273.02104 * 4 3 2
6 6 H 1.08001 * 120.00075 * 187.47807 * 5 4 3
7 7 C 1.38808 * 120.00177 * 7.47775 * 5 4 3
8 8 N 1.31630 * 119.99992 * 27.06364 * 7 5 4
9 9 Si 1.86797 * 120.00545 * 207.06209 * 7 5 4
10 10 H 1.48508 * 109.46809 * 60.00046 * 9 7 5
11 11 H 1.48497 * 109.47595 * 179.97438 * 9 7 5
12 12 H 1.48497 * 109.47261 * 300.00491 * 9 7 5
13 13 S 1.65599 * 119.99738 * 93.02111 * 4 3 2
14 14 O 1.42100 * 106.40552 * 336.45860 * 13 4 3
15 15 O 1.42103 * 106.40464 * 203.54025 * 13 4 3
16 16 C 1.76201 * 107.21867 * 90.00017 * 13 4 3
17 17 C 1.38233 * 119.77173 * 90.00235 * 16 13 4
18 18 C 1.38609 * 120.46346 * 180.02562 * 17 16 13
19 19 C 1.38573 * 119.71889 * 0.24962 * 18 17 16
20 20 C 1.40954 * 119.81207 * 359.47932 * 19 18 17
21 21 C 1.38560 * 119.82921 * 0.52237 * 20 19 18
22 22 C 1.47821 * 105.87437 * 180.31928 * 20 19 18
23 23 O 1.21450 * 125.70734 * 180.19362 * 22 20 19
24 24 N 1.34531 * 108.57920 * 359.55131 * 22 20 19
25 25 C 1.46500 * 124.45753 * 180.02562 * 24 22 20
26 26 C 1.34528 * 111.07610 * 0.62818 * 24 22 20
27 27 O 1.21451 * 125.70421 * 179.47001 * 26 24 22
28 28 H 4.40638 * 5.51367 * 179.97438 * 4 1 2
29 29 H 1.09008 * 109.46724 * 99.60281 * 3 2 1
30 30 H 1.08998 * 109.47576 * 339.60355 * 3 2 1
31 31 H 0.96994 * 120.00027 * 180.02562 * 8 7 5
32 32 H 1.07998 * 119.76824 * 0.02562 * 17 16 13
33 33 H 1.07999 * 120.14361 * 179.97438 * 18 17 16
34 34 H 1.07998 * 120.14219 * 179.77691 * 21 20 19
35 35 H 1.09004 * 109.46751 * 180.59918 * 25 24 22
36 36 H 1.09004 * 109.47160 * 300.59436 * 25 24 22
37 37 H 1.08996 * 109.47475 * 60.59839 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1338 1.0652 0.8804
5 6 3.3026 2.3335 0.3927
6 1 3.7744 3.0887 1.0038
7 6 2.8673 2.6486 -0.8872
8 7 1.8696 1.9803 -1.4262
9 14 3.6973 4.0212 -1.8446
10 1 5.1360 3.6997 -2.0240
11 1 3.0515 4.1575 -3.1748
12 1 3.5648 5.2970 -1.0963
13 16 3.4812 0.7345 2.4654
14 8 2.7236 -0.4171 2.8105
15 8 3.3819 1.9681 3.1638
16 6 5.1754 0.2560 2.5392
17 6 6.1514 1.2145 2.7376
18 6 7.4885 0.8541 2.7975
19 6 7.8486 -0.4761 2.6522
20 6 6.8529 -1.4542 2.4557
21 6 5.5202 -1.0792 2.3980
22 6 7.5680 -2.7434 2.3489
23 8 7.0513 -3.8281 2.1717
24 7 8.8881 -2.5124 2.4667
25 6 9.9196 -3.5512 2.4112
26 6 9.1352 -1.2035 2.6553
27 8 10.2320 -0.7034 2.8030
28 1 -1.0501 -0.0001 -0.0004
29 1 3.0092 0.1723 -1.0134
30 1 3.0099 -0.9624 0.3581
31 1 1.5657 2.2002 -2.3207
32 1 5.8702 2.2515 2.8467
33 1 8.2468 1.6074 2.9523
34 1 4.7534 -1.8239 2.2440
35 1 10.9011 -3.0960 2.5440
36 1 9.7461 -4.2784 3.2045
37 1 9.8792 -4.0521 1.4440
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000490866659.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:53:37
Heat of formation + Delta-G solvation = -19.717374 kcal
Electronic energy + Delta-G solvation = -28020.235237 eV
Core-core repulsion = 23858.068373 eV
Total energy + Delta-G solvation = -4162.166864 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 348.066 amu
Computer time = 2.11 seconds
Orbital eigenvalues (eV)
-43.53646 -39.95027 -39.72011 -38.25193 -37.92957 -37.12296 -36.79416 -33.56018
-33.53415 -32.80365 -32.49093 -28.87219 -28.23108 -26.52769 -25.63170 -24.48819
-23.72267 -21.29893 -20.50885 -19.74597 -19.47882 -18.64791 -18.50557 -18.24061
-18.02338 -17.84134 -16.80065 -16.61984 -16.25942 -16.20738 -15.81390 -15.32068
-15.28296 -15.18668 -15.04373 -14.61771 -14.50700 -14.23411 -13.86270 -13.58294
-13.47942 -13.31600 -13.19272 -13.00340 -12.79069 -12.60513 -12.29371 -12.28601
-11.96347 -11.85301 -11.64994 -11.34322 -11.12901 -10.91601 -10.73779 -10.49449
-10.45994 -9.98433 -8.07516 -5.72589 -1.41841 -0.55155 -0.36854 0.56032
1.10834 1.53896 1.56868 1.62474 1.64734 1.95490 2.22646 2.31360
2.44563 2.56087 2.72671 2.89743 2.95516 3.17845 3.28694 3.44009
3.83132 3.93334 4.01191 4.07835 4.16180 4.27783 4.37122 4.40559
4.48999 4.53678 4.65623 4.69100 4.78029 4.98779 5.27055 5.29608
5.37302 5.57490 5.71109 5.86416 6.37394 6.47560 7.07484 7.30781
7.40690 8.89264
Molecular weight = 348.07amu
Principal moments of inertia in cm(-1)
A = 0.013296 B = 0.003837 C = 0.003522
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2105.441407 B = 7294.757331 C = 7947.990766
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.265 4.265
2 C -0.138 4.138
3 C 0.250 3.750
4 N -0.853 5.853
5 C -0.354 4.354
6 H 0.113 0.887
7 C 0.010 3.990
8 N -0.876 5.876
9 Si 0.960 3.040
10 H -0.265 1.265
11 H -0.292 1.292
12 H -0.274 1.274
13 S 2.677 3.323
14 O -0.986 6.986
15 O -0.978 6.978
16 C -0.656 4.656
17 C 0.013 3.987
18 C -0.050 4.050
19 C -0.101 4.101
20 C -0.176 4.176
21 C 0.041 3.959
22 C 0.584 3.416
23 O -0.479 6.479
24 N -0.575 5.575
25 C 0.072 3.928
26 C 0.584 3.416
27 O -0.472 6.472
28 H 0.228 0.772
29 H 0.097 0.903
30 H 0.087 0.913
31 H 0.264 0.736
32 H 0.173 0.827
33 H 0.186 0.814
34 H 0.158 0.842
35 H 0.108 0.892
36 H 0.093 0.907
37 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.954 -6.313 4.869 16.071
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.284 4.284
2 C -0.141 4.141
3 C 0.125 3.875
4 N -0.685 5.685
5 C -0.483 4.483
6 H 0.131 0.869
7 C -0.195 4.195
8 N -0.514 5.514
9 Si 0.785 3.215
10 H -0.190 1.190
11 H -0.218 1.218
12 H -0.199 1.199
13 S 2.769 3.231
14 O -0.976 6.976
15 O -0.969 6.969
16 C -0.741 4.741
17 C -0.006 4.006
18 C -0.069 4.069
19 C -0.105 4.105
20 C -0.180 4.180
21 C 0.022 3.978
22 C 0.373 3.627
23 O -0.352 6.352
24 N -0.317 5.317
25 C -0.066 4.066
26 C 0.373 3.627
27 O -0.344 6.344
28 H 0.244 0.756
29 H 0.115 0.885
30 H 0.105 0.895
31 H 0.074 0.926
32 H 0.191 0.809
33 H 0.203 0.797
34 H 0.175 0.825
35 H 0.127 0.873
36 H 0.112 0.888
37 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges 13.753 -6.682 5.411 16.220
hybrid contribution 0.306 0.494 -1.011 1.166
sum 14.059 -6.189 4.400 15.978
Atomic orbital electron populations
1.25056 0.96455 1.03787 1.03145 1.23573 0.95350 0.97120 0.98028
1.17943 0.84454 0.88119 0.97003 1.52992 1.73815 1.14329 1.27336
1.19343 1.41646 0.86724 1.00615 0.86913 1.25656 0.95228 1.00528
0.98065 1.70333 1.21415 1.43514 1.16176 0.85516 0.79286 0.79222
0.77453 1.18981 1.21797 1.19911 1.02144 0.75351 0.72556 0.73061
1.93511 1.69202 1.51863 1.83012 1.93478 1.86757 1.44459 1.72168
1.31756 1.27356 1.01128 1.13893 1.21602 0.91538 1.00424 0.87026
1.21236 0.96604 0.94099 0.94963 1.20919 0.93276 0.95667 1.00659
1.20525 0.94889 0.94280 1.08349 1.20493 0.95109 0.94259 0.87984
1.18247 0.81978 0.88108 0.74332 1.90814 1.71903 1.28427 1.44012
1.46459 1.09106 1.10126 1.66047 1.22243 0.89866 0.89280 1.05244
1.18227 0.88258 0.81844 0.74333 1.90813 1.27085 1.72133 1.44327
0.75576 0.88484 0.89491 0.92607 0.80945 0.79707 0.82471 0.87305
0.88834 0.88947
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 42.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.27 -11.53 19.25 74.32 1.43 -10.10 16
2 C -0.14 -6.45 11.20 31.13 0.35 -6.10 16
3 C 0.25 10.85 5.10 84.57 0.43 11.28 16
4 N -0.85 -37.84 2.88 -352.51 -1.02 -38.86 16
5 C -0.35 -16.82 9.36 84.03 0.79 -16.03 16
6 H 0.11 5.15 7.43 -2.91 -0.02 5.13 16
7 C 0.01 0.46 4.86 84.86 0.41 0.88 16
8 N -0.88 -44.16 9.10 21.65 0.20 -43.96 16
9 Si 0.96 38.28 29.63 68.60 2.03 40.31 16
10 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16
11 H -0.29 -11.84 7.11 99.48 0.71 -11.13 16
12 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16
13 S 2.68 106.46 5.60 -56.49 -0.32 106.15 16
14 O -0.99 -42.09 16.28 -128.00 -2.08 -44.17 16
15 O -0.98 -42.75 16.13 -128.00 -2.06 -44.81 16
16 C -0.66 -20.26 5.98 22.36 0.13 -20.13 16
17 C 0.01 0.34 9.51 22.36 0.21 0.55 16
18 C -0.05 -1.04 10.09 22.44 0.23 -0.81 16
19 C -0.10 -2.35 6.41 -20.00 -0.13 -2.48 16
20 C -0.18 -4.60 6.41 -20.00 -0.13 -4.72 16
21 C 0.04 1.20 9.56 22.44 0.21 1.41 16
22 C 0.58 14.69 8.02 86.82 0.70 15.39 16
23 O -0.48 -14.10 17.80 -3.56 -0.06 -14.16 16
24 N -0.58 -11.83 3.02 -786.37 -2.38 -14.21 16
25 C 0.07 0.94 10.87 127.77 1.39 2.33 16
26 C 0.58 13.01 8.02 86.81 0.70 13.71 16
27 O -0.47 -11.65 17.43 -3.56 -0.06 -11.71 16
28 H 0.23 7.86 7.80 -4.41 -0.03 7.82 16
29 H 0.10 4.35 6.52 -2.38 -0.02 4.33 16
30 H 0.09 3.19 7.68 -2.39 -0.02 3.17 16
31 H 0.26 12.92 8.31 -92.71 -0.77 12.14 16
32 H 0.17 3.97 7.58 -2.91 -0.02 3.95 16
33 H 0.19 2.54 8.06 -2.91 -0.02 2.52 16
34 H 0.16 4.40 7.61 -2.91 -0.02 4.38 16
35 H 0.11 1.16 7.58 -2.38 -0.02 1.15 16
36 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16
37 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16
Total: -1.00 -66.38 348.69 2.10 -64.28
By element:
Atomic # 1 Polarization: 14.85 SS G_CDS: 1.14 Total: 15.98 kcal
Atomic # 6 Polarization: -21.56 SS G_CDS: 6.72 Total: -14.84 kcal
Atomic # 7 Polarization: -93.83 SS G_CDS: -3.20 Total: -97.03 kcal
Atomic # 8 Polarization: -110.58 SS G_CDS: -4.27 Total: -114.85 kcal
Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.31 kcal
Atomic # 16 Polarization: 106.46 SS G_CDS: -0.32 Total: 106.15 kcal
Total: -66.38 2.10 -64.28 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000490866659.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.564 kcal
(2) G-P(sol) polarization free energy of solvation -66.385 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.821 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.281 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.717 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.11 seconds