Wall clock time and date at job start Wed Apr 1 2020 05:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00004 * 2 1 4 4 H 1.48503 * 109.47060 * 239.99786 * 3 2 1 5 5 H 1.48500 * 109.47146 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47145 * 119.99993 * 3 2 1 7 7 C 1.37870 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99948 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00202 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47272 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47465 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.47407 * 179.97438 * 11 10 9 13 13 S 1.65607 * 120.00127 * 164.99773 * 12 11 10 14 14 O 1.42107 * 106.40053 * 311.46118 * 13 12 11 15 15 O 1.42099 * 106.40001 * 178.53996 * 13 12 11 16 16 C 1.76198 * 107.21643 * 64.99603 * 13 12 11 17 17 C 1.38252 * 120.00213 * 269.97972 * 16 13 12 18 18 C 1.38212 * 119.99874 * 179.97438 * 17 16 13 19 19 C 1.38254 * 120.00305 * 0.02562 * 18 17 16 20 20 C 1.38218 * 119.99695 * 0.09098 * 19 18 17 21 21 S 1.76199 * 119.99633 * 179.97438 * 20 19 18 22 22 N 1.65600 * 107.21686 * 269.90346 * 21 20 19 23 23 O 1.42098 * 106.40706 * 23.44581 * 21 20 19 24 24 O 1.42109 * 106.40127 * 156.37053 * 21 20 19 25 25 C 1.38215 * 119.99492 * 90.00282 * 16 13 12 26 26 H 0.96999 * 119.99775 * 0.02562 * 1 2 3 27 27 H 1.08992 * 109.47053 * 59.99879 * 9 7 2 28 28 H 1.09004 * 109.47073 * 299.99550 * 9 7 2 29 29 H 1.09000 * 109.47485 * 59.99606 * 10 9 7 30 30 H 1.09002 * 109.47254 * 299.99954 * 10 9 7 31 31 H 1.09000 * 109.47175 * 59.99313 * 11 10 9 32 32 H 1.09004 * 109.46893 * 299.99386 * 11 10 9 33 33 H 0.96998 * 120.00240 * 344.99794 * 12 11 10 34 34 H 1.08001 * 120.00328 * 0.02562 * 17 16 13 35 35 H 1.08000 * 119.99977 * 180.02562 * 18 17 16 36 36 H 1.07997 * 120.00453 * 180.02562 * 19 18 17 37 37 H 0.97004 * 120.00258 * 0.02562 * 22 21 20 38 38 H 0.97001 * 120.00476 * 179.97438 * 22 21 20 39 39 H 1.07995 * 120.00164 * 359.70284 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0012 12 7 2.4322 -6.1006 0.0018 13 16 1.9171 -7.6302 0.3726 14 8 1.1532 -7.5182 1.5656 15 8 3.0528 -8.4759 0.2533 16 6 0.7943 -8.1234 -0.8926 17 6 -0.5561 -7.8585 -0.7602 18 6 -1.4367 -8.2449 -1.7529 19 6 -0.9673 -8.8968 -2.8781 20 6 0.3825 -9.1638 -3.0093 21 16 0.9807 -9.9952 -4.4431 22 7 0.9443 -11.6188 -4.1191 23 8 0.0222 -9.7689 -5.4674 24 8 2.3513 -9.6419 -4.5692 25 6 1.2637 -8.7755 -2.0172 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5570 -0.8896 28 1 0.6241 -2.5567 0.8904 29 1 2.8713 -3.6039 0.8922 30 1 2.8726 -3.6047 -0.8877 31 1 0.8545 -5.0449 -0.8894 32 1 0.8527 -5.0447 0.8906 33 1 3.3643 -5.9420 -0.2150 34 1 -0.9229 -7.3489 0.1186 35 1 -2.4916 -8.0376 -1.6496 36 1 -1.6553 -9.1984 -3.6540 37 1 0.6291 -11.9346 -3.2578 38 1 1.2376 -12.2541 -4.7908 39 1 2.3191 -8.9785 -2.1227 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000507511315.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:32 Heat of formation + Delta-G solvation = -133.182445 kcal Electronic energy + Delta-G solvation = -25745.227166 eV Core-core repulsion = 21713.584039 eV Total energy + Delta-G solvation = -4031.643128 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.73109 -37.55821 -37.40201 -36.23048 -36.09268 -35.99062 -33.66493 -33.29821 -32.07625 -31.82440 -30.92991 -26.46323 -24.10873 -23.85516 -23.05943 -20.72361 -20.36320 -19.59331 -18.91798 -17.84005 -17.48319 -17.38153 -16.80109 -16.50708 -16.41853 -15.84225 -15.80007 -15.28071 -14.69195 -14.60246 -14.50490 -14.36521 -13.76941 -12.92592 -12.86076 -12.65821 -12.56836 -12.48266 -12.38817 -12.32312 -12.29948 -12.17057 -12.08702 -11.63589 -11.52518 -11.08161 -10.96913 -10.93125 -10.81645 -10.60800 -10.27150 -9.98895 -9.84124 -9.52136 -9.36690 -9.16474 -8.40371 -6.05813 -4.08553 -0.14718 0.06782 0.25858 0.46326 2.47586 2.73845 2.97066 3.23403 3.30735 3.35326 3.37759 3.57172 3.89956 4.21829 4.31170 4.36063 4.41927 4.47560 4.87560 4.95712 5.18929 5.22677 5.28407 5.30471 5.44462 5.50678 5.55608 5.60209 5.81278 5.98820 6.12277 6.49676 6.52811 6.68466 6.88289 7.04548 7.57534 7.69793 7.92539 8.34220 8.97648 9.56019 11.05486 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.013765 B = 0.002557 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.668526 B =10948.146102 C =11724.871921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.116 4.116 11 C 0.110 3.890 12 N -1.110 6.110 13 S 2.694 3.306 14 O -0.951 6.951 15 O -0.960 6.960 16 C -0.697 4.697 17 C 0.040 3.960 18 C -0.156 4.156 19 C 0.031 3.969 20 C -0.700 4.700 21 S 2.704 3.296 22 N -1.250 6.250 23 O -0.960 6.960 24 O -0.956 6.956 25 C 0.081 3.919 26 H 0.262 0.738 27 H 0.018 0.982 28 H 0.020 0.980 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.420 0.580 34 H 0.154 0.846 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.417 0.583 38 H 0.422 0.578 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.319 -25.330 -5.666 26.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.155 4.155 11 C -0.015 4.015 12 N -0.872 5.872 13 S 2.781 3.219 14 O -0.941 6.941 15 O -0.950 6.950 16 C -0.782 4.782 17 C 0.021 3.979 18 C -0.176 4.176 19 C 0.012 3.988 20 C -0.788 4.788 21 S 2.792 3.208 22 N -0.925 5.925 23 O -0.949 6.949 24 O -0.945 6.945 25 C 0.060 3.940 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.256 0.744 34 H 0.172 0.828 35 H 0.165 0.835 36 H 0.169 0.831 37 H 0.244 0.756 38 H 0.252 0.748 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.160 -25.139 -5.752 25.879 hybrid contribution 0.002 0.834 -0.010 0.834 sum -2.158 -24.305 -5.762 25.072 Atomic orbital electron populations 1.69945 1.06061 1.26843 1.50583 1.25016 0.94870 0.99313 0.95198 0.86633 0.79567 0.83004 0.78650 1.20235 1.21284 1.20202 1.21171 0.93051 0.90914 1.50997 0.92620 1.19071 0.93913 0.91022 0.97576 1.21861 0.99684 0.92525 1.01474 1.21661 0.91376 0.86877 1.01575 1.55483 1.19672 1.23893 1.88201 1.01986 0.73370 0.72663 0.73883 1.93610 1.72522 1.86077 1.41857 1.93595 1.48991 1.65563 1.86867 1.31405 1.11743 1.16412 1.18671 1.21438 0.91077 0.88128 0.97302 1.21511 1.01166 1.00601 0.94274 1.21312 0.93131 0.88442 0.95920 1.30756 1.03394 1.22637 1.22005 1.01580 0.74053 0.72466 0.72735 1.53046 1.85052 1.26877 1.27560 1.93618 1.62981 1.84515 1.53761 1.93639 1.33716 1.82299 1.84841 1.20763 0.99951 0.85298 0.87971 0.92867 0.96337 0.96176 0.92205 0.92433 0.92134 0.90329 0.74416 0.82842 0.83487 0.83104 0.75564 0.74779 0.82270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.22 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.30 9.11 -34.44 -0.31 -14.62 16 8 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.12 -2.16 5.29 -26.73 -0.14 -2.30 16 11 C 0.11 1.65 6.22 -4.04 -0.03 1.62 16 12 N -1.11 -13.99 6.00 -10.61 -0.06 -14.05 16 13 S 2.69 33.60 5.74 -107.50 -0.62 32.98 16 14 O -0.95 -14.11 16.75 -57.17 -0.96 -15.06 16 15 O -0.96 -13.54 17.28 -57.17 -0.99 -14.53 16 16 C -0.70 -7.61 5.95 -39.58 -0.24 -7.85 16 17 C 0.04 0.38 9.52 -39.59 -0.38 0.01 16 18 C -0.16 -1.24 10.05 -39.58 -0.40 -1.64 16 19 C 0.03 0.25 9.52 -39.58 -0.38 -0.13 16 20 C -0.70 -6.27 5.94 -39.58 -0.24 -6.51 16 21 S 2.70 22.67 6.28 -107.50 -0.68 21.99 16 22 N -1.25 -5.22 9.55 60.35 0.58 -4.65 16 23 O -0.96 -10.58 17.28 -57.17 -0.99 -11.57 16 24 O -0.96 -11.41 17.28 -57.17 -0.99 -12.39 16 25 C 0.08 0.84 9.00 -39.58 -0.36 0.48 16 26 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 1.17 7.75 -51.93 -0.40 0.77 16 33 H 0.42 4.63 8.65 -34.47 -0.30 4.33 16 34 H 0.15 1.30 7.62 -52.49 -0.40 0.90 16 35 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.15 0.85 7.62 -52.49 -0.40 0.45 16 37 H 0.42 0.81 8.92 -34.47 -0.31 0.51 16 38 H 0.42 1.06 8.96 -34.48 -0.31 0.75 16 39 H 0.16 1.53 7.18 -52.49 -0.38 1.15 16 LS Contribution 362.86 15.07 5.47 5.47 Total: -1.00 -38.80 362.86 -10.78 -49.58 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -4.57 Total: 0.48 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: -2.69 Total: -29.02 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 1.25 Total: -44.18 kcal Atomic # 8 Polarization: -49.63 SS G_CDS: -3.92 Total: -53.55 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 56.27 SS G_CDS: -1.29 Total: 54.98 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -38.80 -10.78 -49.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000507511315.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.599 kcal (2) G-P(sol) polarization free energy of solvation -38.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds