Wall clock time and date at job start Wed Apr 1 2020 05:29:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30740 * 1
3 3 Si 1.86806 * 119.99986 * 2 1
4 4 H 1.48502 * 109.47138 * 179.97438 * 3 2 1
5 5 H 1.48499 * 109.46812 * 299.99775 * 3 2 1
6 6 H 1.48497 * 109.46675 * 59.99838 * 3 2 1
7 7 C 1.40027 * 120.00165 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99995 * 196.92876 * 7 2 1
9 9 C 1.41549 * 120.00113 * 16.91679 * 7 2 1
10 10 C 1.41181 * 120.99488 * 202.25550 * 9 7 2
11 11 C 1.36562 * 119.14577 * 179.97438 * 10 9 7
12 12 N 1.32092 * 121.27110 * 359.97438 * 11 10 9
13 13 C 1.32535 * 122.21389 * 0.02562 * 12 11 10
14 14 N 1.39077 * 119.65651 * 179.97438 * 13 12 11
15 15 S 1.65606 * 119.99902 * 354.22390 * 14 13 12
16 16 O 1.42099 * 106.39913 * 47.84820 * 15 14 13
17 17 O 1.42099 * 106.40194 * 180.76516 * 15 14 13
18 18 C 1.76200 * 107.21741 * 294.30936 * 15 14 13
19 19 C 1.38282 * 119.98155 * 115.48079 * 18 15 14
20 20 C 1.38215 * 120.13710 * 179.97438 * 19 18 15
21 21 C 1.38273 * 120.14688 * 0.02562 * 20 19 18
22 22 C 1.38500 * 120.03007 * 359.97438 * 21 20 19
23 23 C 1.38499 * 119.98488 * 295.20014 * 18 15 14
24 24 O 1.36505 * 131.53987 * 0.67309 * 23 18 15
25 25 C 1.43986 * 105.55842 * 162.24348 * 24 23 18
26 26 O 1.36504 * 131.54230 * 180.02562 * 22 21 20
27 27 C 1.38739 * 120.68525 * 0.25788 * 13 12 11
28 28 H 0.96998 * 120.00285 * 0.02562 * 1 2 3
29 29 H 1.08004 * 120.43052 * 0.02562 * 10 9 7
30 30 H 1.08003 * 119.36129 * 179.97438 * 11 10 9
31 31 H 0.96994 * 120.00175 * 174.50127 * 14 13 12
32 32 H 1.07996 * 119.93030 * 359.94748 * 19 18 15
33 33 H 1.08006 * 119.92236 * 179.97438 * 20 19 18
34 34 H 1.08000 * 119.98415 * 179.97438 * 21 20 19
35 35 H 1.09001 * 110.57678 * 268.32650 * 25 24 23
36 36 H 1.09000 * 110.69885 * 145.51291 * 25 24 23
37 37 H 1.08003 * 120.66597 * 179.74320 * 27 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3074 0.0000 0.0000
3 14 2.2414 1.6178 0.0000
4 1 3.7014 1.3464 0.0006
5 1 1.8827 2.3964 -1.2125
6 1 1.8826 2.3964 1.2125
7 6 2.0076 -1.2126 -0.0005
8 1 3.0525 -1.2330 0.2718
9 6 1.3458 -2.4118 -0.3578
10 6 1.8395 -3.6668 0.0599
11 6 1.1707 -4.7999 -0.3060
12 7 0.0744 -4.7420 -1.0404
13 6 -0.4346 -3.5928 -1.4609
14 7 -1.5917 -3.5938 -2.2323
15 16 -2.2462 -5.0273 -2.7413
16 8 -2.2947 -5.8736 -1.6009
17 8 -3.3933 -4.6939 -3.5110
18 6 -1.0948 -5.7598 -3.8559
19 6 -0.4855 -6.9580 -3.5315
20 6 0.4178 -7.5357 -4.4036
21 6 0.7166 -6.9178 -5.6040
22 6 0.1102 -5.7175 -5.9355
23 6 -0.8047 -5.1381 -5.0591
24 8 -1.2535 -3.9708 -5.6061
25 6 -0.3079 -3.6402 -6.6404
26 8 0.2271 -4.9176 -7.0354
27 6 0.1783 -2.3890 -1.1442
28 1 -0.4850 0.8400 -0.0004
29 1 2.7340 -3.7300 0.6618
30 1 1.5455 -5.7618 0.0113
31 1 -2.0132 -2.7548 -2.4756
32 1 -0.7157 -7.4432 -2.5945
33 1 0.8919 -8.4715 -4.1466
34 1 1.4231 -7.3713 -6.2833
35 1 0.4811 -2.9990 -6.2474
36 1 -0.8084 -3.1588 -7.4805
37 1 -0.2343 -1.4529 -1.4904
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000568535032.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:29:09
Heat of formation + Delta-G solvation = -69.033611 kcal
Electronic energy + Delta-G solvation = -28542.583101 eV
Core-core repulsion = 24378.277725 eV
Total energy + Delta-G solvation = -4164.305377 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 348.066 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-42.30404 -38.73080 -37.90356 -36.77633 -36.40768 -35.42348 -34.76840 -33.85033
-31.00545 -30.66457 -30.07507 -28.29706 -26.13310 -25.97182 -23.53340 -23.08714
-22.07894 -21.48179 -19.37073 -18.47311 -18.18415 -17.76669 -17.48039 -17.14062
-16.61405 -16.07025 -15.68337 -15.32117 -14.77675 -14.59291 -14.34624 -14.33587
-14.14880 -13.74665 -13.19334 -13.16240 -13.11659 -12.95191 -12.71918 -12.56462
-12.13585 -11.86424 -11.63418 -11.54389 -11.47663 -11.29354 -11.11296 -11.04244
-10.70987 -10.40179 -10.32785 -10.11410 -9.51307 -9.33812 -8.21788 -8.19068
-8.13693 -7.27054 -6.94720 -4.73412 0.59590 0.88290 1.07965 2.55245
2.62734 2.73065 2.95426 3.00237 3.11990 3.18993 3.25482 3.45195
3.75764 4.05145 4.35589 4.51477 4.54661 4.67396 4.83476 4.94662
5.11787 5.20198 5.24533 5.29890 5.55014 5.64956 5.82912 6.04037
6.17212 6.18397 6.29577 6.63388 6.66130 6.86830 6.89216 6.94131
7.05603 7.33906 7.49428 7.75786 8.00914 8.36484 8.61625 8.63035
9.34391 9.93830
Molecular weight = 348.07amu
Principal moments of inertia in cm(-1)
A = 0.012453 B = 0.004058 C = 0.003797
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2247.861478 B = 6898.076798 C = 7372.823427
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.779 5.779
2 C 0.077 3.923
3 Si 0.912 3.088
4 H -0.258 1.258
5 H -0.270 1.270
6 H -0.272 1.272
7 C -0.448 4.448
8 H 0.084 0.916
9 C 0.144 3.856
10 C -0.285 4.285
11 C 0.136 3.864
12 N -0.599 5.599
13 C 0.351 3.649
14 N -1.028 6.028
15 S 2.700 3.300
16 O -0.926 6.926
17 O -0.966 6.966
18 C -0.638 4.638
19 C 0.007 3.993
20 C -0.135 4.135
21 C -0.052 4.052
22 C 0.003 3.997
23 C 0.130 3.870
24 O -0.299 6.299
25 C 0.211 3.789
26 O -0.308 6.308
27 C -0.239 4.239
28 H 0.284 0.716
29 H 0.104 0.896
30 H 0.128 0.872
31 H 0.427 0.573
32 H 0.160 0.840
33 H 0.146 0.854
34 H 0.139 0.861
35 H 0.091 0.909
36 H 0.136 0.864
37 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.301 -6.425 -10.216 12.139
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.404 5.404
2 C -0.143 4.143
3 Si 0.736 3.264
4 H -0.182 1.182
5 H -0.195 1.195
6 H -0.197 1.197
7 C -0.479 4.479
8 H 0.102 0.898
9 C 0.136 3.864
10 C -0.309 4.309
11 C -0.016 4.016
12 N -0.322 5.322
13 C 0.126 3.874
14 N -0.779 5.779
15 S 2.788 3.212
16 O -0.915 6.915
17 O -0.956 6.956
18 C -0.723 4.723
19 C -0.013 4.013
20 C -0.154 4.154
21 C -0.070 4.070
22 C -0.041 4.041
23 C 0.083 3.917
24 O -0.214 6.214
25 C 0.100 3.900
26 O -0.225 6.225
27 C -0.266 4.266
28 H 0.095 0.905
29 H 0.122 0.878
30 H 0.145 0.855
31 H 0.263 0.737
32 H 0.178 0.822
33 H 0.163 0.837
34 H 0.157 0.843
35 H 0.109 0.891
36 H 0.154 0.846
37 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges -0.225 -7.468 -10.384 12.793
hybrid contribution 1.293 2.304 -0.408 2.674
sum 1.069 -5.164 -10.792 12.011
Atomic orbital electron populations
1.69778 1.07772 1.29653 1.33180 1.26014 0.94782 1.01710 0.91839
0.86196 0.81004 0.80448 0.78784 1.18198 1.19544 1.19735 1.19677
0.98019 0.90722 1.39501 0.89759 1.17636 0.89899 0.92355 0.86552
1.21569 1.05189 0.93734 1.10402 1.21221 0.89874 0.97086 0.93447
1.66675 1.17014 1.26276 1.22213 1.17670 0.86055 0.91721 0.91940
1.52995 1.37104 1.25249 1.62550 1.01885 0.72581 0.73120 0.73613
1.93588 1.85202 1.65700 1.47059 1.93597 1.45871 1.83771 1.72352
1.29874 1.24763 1.08954 1.08746 1.20837 0.91020 0.90675 0.98728
1.21044 0.99659 1.01194 0.93511 1.20297 0.97808 0.91811 0.97126
1.19742 1.00664 0.96703 0.87032 1.19079 0.92509 0.87122 0.92997
1.87456 1.47621 1.37172 1.49111 1.25772 0.88915 0.85929 0.89432
1.87352 1.80757 1.22430 1.31937 1.21648 1.01658 0.95811 1.07517
0.90475 0.87802 0.85484 0.73701 0.82218 0.83654 0.84316 0.89112
0.84621 0.85124
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.78 -18.62 10.84 55.55 0.60 -18.02 16
2 C 0.08 1.78 5.21 -17.35 -0.09 1.69 16
3 Si 0.91 17.19 29.59 -169.99 -5.03 12.16 16
4 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16
5 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16
6 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16
7 C -0.45 -10.97 9.12 -37.65 -0.34 -11.31 16
8 H 0.08 1.97 7.90 -52.48 -0.41 1.55 16
9 C 0.14 3.59 5.62 -106.56 -0.60 2.99 16
10 C -0.28 -6.46 9.85 -39.07 -0.38 -6.84 16
11 C 0.14 2.92 11.10 -18.04 -0.20 2.72 16
12 N -0.60 -13.49 8.37 -12.82 -0.11 -13.59 16
13 C 0.35 8.00 7.35 -154.98 -1.14 6.86 16
14 N -1.03 -20.39 5.84 31.09 0.18 -20.21 16
15 S 2.70 51.93 5.33 -107.50 -0.57 51.35 16
16 O -0.93 -19.56 15.65 -57.17 -0.89 -20.46 16
17 O -0.97 -19.62 17.93 -57.17 -1.03 -20.65 16
18 C -0.64 -11.06 5.75 -39.47 -0.23 -11.29 16
19 C 0.01 0.10 9.54 -39.57 -0.38 -0.28 16
20 C -0.14 -1.62 10.04 -39.58 -0.40 -2.01 16
21 C -0.05 -0.63 10.06 -39.47 -0.40 -1.03 16
22 C 0.00 0.05 7.15 -39.08 -0.28 -0.23 16
23 C 0.13 2.18 6.79 -39.08 -0.27 1.92 16
24 O -0.30 -4.76 11.39 -45.71 -0.52 -5.28 16
25 C 0.21 2.49 8.89 101.05 0.90 3.39 16
26 O -0.31 -4.21 11.40 -45.70 -0.52 -4.73 16
27 C -0.24 -5.81 8.64 -38.43 -0.33 -6.14 16
28 H 0.28 6.12 8.29 -40.82 -0.34 5.78 16
29 H 0.10 2.15 8.06 -52.48 -0.42 1.73 16
30 H 0.13 2.28 8.06 -52.48 -0.42 1.86 16
31 H 0.43 7.50 8.82 -34.47 -0.30 7.20 16
32 H 0.16 2.26 7.33 -52.49 -0.38 1.88 16
33 H 0.15 1.20 8.06 -52.48 -0.42 0.78 16
34 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16
35 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16
36 H 0.14 1.08 8.14 -51.93 -0.42 0.66 16
37 H 0.13 3.21 6.11 -52.48 -0.32 2.89 16
LS Contribution 339.76 15.07 5.12 5.12
Total: -1.00 -31.91 339.76 -10.00 -41.91
By element:
Atomic # 1 Polarization: 15.05 SS G_CDS: -3.10 Total: 11.95 kcal
Atomic # 6 Polarization: -15.43 SS G_CDS: -4.13 Total: -19.56 kcal
Atomic # 7 Polarization: -52.49 SS G_CDS: 0.68 Total: -51.82 kcal
Atomic # 8 Polarization: -48.15 SS G_CDS: -2.96 Total: -51.11 kcal
Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.16 kcal
Atomic # 16 Polarization: 51.93 SS G_CDS: -0.57 Total: 51.35 kcal
Total LS contribution 5.12 Total: 5.12 kcal
Total: -31.91 -10.00 -41.91 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000568535032.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.124 kcal
(2) G-P(sol) polarization free energy of solvation -31.912 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.036 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.997 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.909 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.034 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds