Wall clock time and date at job start Wed Apr 1 2020 05:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86806 * 119.99986 * 2 1 4 4 H 1.48502 * 109.47138 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46812 * 299.99775 * 3 2 1 6 6 H 1.48497 * 109.46675 * 59.99838 * 3 2 1 7 7 C 1.40027 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99995 * 196.92876 * 7 2 1 9 9 C 1.41549 * 120.00113 * 16.91679 * 7 2 1 10 10 C 1.41181 * 120.99488 * 202.25550 * 9 7 2 11 11 C 1.36562 * 119.14577 * 179.97438 * 10 9 7 12 12 N 1.32092 * 121.27110 * 359.97438 * 11 10 9 13 13 C 1.32535 * 122.21389 * 0.02562 * 12 11 10 14 14 N 1.39077 * 119.65651 * 179.97438 * 13 12 11 15 15 S 1.65606 * 119.99902 * 354.22390 * 14 13 12 16 16 O 1.42099 * 106.39913 * 47.84820 * 15 14 13 17 17 O 1.42099 * 106.40194 * 180.76516 * 15 14 13 18 18 C 1.76200 * 107.21741 * 294.30936 * 15 14 13 19 19 C 1.38282 * 119.98155 * 115.48079 * 18 15 14 20 20 C 1.38215 * 120.13710 * 179.97438 * 19 18 15 21 21 C 1.38273 * 120.14688 * 0.02562 * 20 19 18 22 22 C 1.38500 * 120.03007 * 359.97438 * 21 20 19 23 23 C 1.38499 * 119.98488 * 295.20014 * 18 15 14 24 24 O 1.36505 * 131.53987 * 0.67309 * 23 18 15 25 25 C 1.43986 * 105.55842 * 162.24348 * 24 23 18 26 26 O 1.36504 * 131.54230 * 180.02562 * 22 21 20 27 27 C 1.38739 * 120.68525 * 0.25788 * 13 12 11 28 28 H 0.96998 * 120.00285 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.43052 * 0.02562 * 10 9 7 30 30 H 1.08003 * 119.36129 * 179.97438 * 11 10 9 31 31 H 0.96994 * 120.00175 * 174.50127 * 14 13 12 32 32 H 1.07996 * 119.93030 * 359.94748 * 19 18 15 33 33 H 1.08006 * 119.92236 * 179.97438 * 20 19 18 34 34 H 1.08000 * 119.98415 * 179.97438 * 21 20 19 35 35 H 1.09001 * 110.57678 * 268.32650 * 25 24 23 36 36 H 1.09000 * 110.69885 * 145.51291 * 25 24 23 37 37 H 1.08003 * 120.66597 * 179.74320 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3464 0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8826 2.3964 1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 3.0525 -1.2330 0.2718 9 6 1.3458 -2.4118 -0.3578 10 6 1.8395 -3.6668 0.0599 11 6 1.1707 -4.7999 -0.3060 12 7 0.0744 -4.7420 -1.0404 13 6 -0.4346 -3.5928 -1.4609 14 7 -1.5917 -3.5938 -2.2323 15 16 -2.2462 -5.0273 -2.7413 16 8 -2.2947 -5.8736 -1.6009 17 8 -3.3933 -4.6939 -3.5110 18 6 -1.0948 -5.7598 -3.8559 19 6 -0.4855 -6.9580 -3.5315 20 6 0.4178 -7.5357 -4.4036 21 6 0.7166 -6.9178 -5.6040 22 6 0.1102 -5.7175 -5.9355 23 6 -0.8047 -5.1381 -5.0591 24 8 -1.2535 -3.9708 -5.6061 25 6 -0.3079 -3.6402 -6.6404 26 8 0.2271 -4.9176 -7.0354 27 6 0.1783 -2.3890 -1.1442 28 1 -0.4850 0.8400 -0.0004 29 1 2.7340 -3.7300 0.6618 30 1 1.5455 -5.7618 0.0113 31 1 -2.0132 -2.7548 -2.4756 32 1 -0.7157 -7.4432 -2.5945 33 1 0.8919 -8.4715 -4.1466 34 1 1.4231 -7.3713 -6.2833 35 1 0.4811 -2.9990 -6.2474 36 1 -0.8084 -3.1588 -7.4805 37 1 -0.2343 -1.4529 -1.4904 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568535032.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:09 Heat of formation + Delta-G solvation = -69.033611 kcal Electronic energy + Delta-G solvation = -28542.583101 eV Core-core repulsion = 24378.277725 eV Total energy + Delta-G solvation = -4164.305377 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.30404 -38.73080 -37.90356 -36.77633 -36.40768 -35.42348 -34.76840 -33.85033 -31.00545 -30.66457 -30.07507 -28.29706 -26.13310 -25.97182 -23.53340 -23.08714 -22.07894 -21.48179 -19.37073 -18.47311 -18.18415 -17.76669 -17.48039 -17.14062 -16.61405 -16.07025 -15.68337 -15.32117 -14.77675 -14.59291 -14.34624 -14.33587 -14.14880 -13.74665 -13.19334 -13.16240 -13.11659 -12.95191 -12.71918 -12.56462 -12.13585 -11.86424 -11.63418 -11.54389 -11.47663 -11.29354 -11.11296 -11.04244 -10.70987 -10.40179 -10.32785 -10.11410 -9.51307 -9.33812 -8.21788 -8.19068 -8.13693 -7.27054 -6.94720 -4.73412 0.59590 0.88290 1.07965 2.55245 2.62734 2.73065 2.95426 3.00237 3.11990 3.18993 3.25482 3.45195 3.75764 4.05145 4.35589 4.51477 4.54661 4.67396 4.83476 4.94662 5.11787 5.20198 5.24533 5.29890 5.55014 5.64956 5.82912 6.04037 6.17212 6.18397 6.29577 6.63388 6.66130 6.86830 6.89216 6.94131 7.05603 7.33906 7.49428 7.75786 8.00914 8.36484 8.61625 8.63035 9.34391 9.93830 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.012453 B = 0.004058 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.861478 B = 6898.076798 C = 7372.823427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.077 3.923 3 Si 0.912 3.088 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.448 4.448 8 H 0.084 0.916 9 C 0.144 3.856 10 C -0.285 4.285 11 C 0.136 3.864 12 N -0.599 5.599 13 C 0.351 3.649 14 N -1.028 6.028 15 S 2.700 3.300 16 O -0.926 6.926 17 O -0.966 6.966 18 C -0.638 4.638 19 C 0.007 3.993 20 C -0.135 4.135 21 C -0.052 4.052 22 C 0.003 3.997 23 C 0.130 3.870 24 O -0.299 6.299 25 C 0.211 3.789 26 O -0.308 6.308 27 C -0.239 4.239 28 H 0.284 0.716 29 H 0.104 0.896 30 H 0.128 0.872 31 H 0.427 0.573 32 H 0.160 0.840 33 H 0.146 0.854 34 H 0.139 0.861 35 H 0.091 0.909 36 H 0.136 0.864 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.301 -6.425 -10.216 12.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.479 4.479 8 H 0.102 0.898 9 C 0.136 3.864 10 C -0.309 4.309 11 C -0.016 4.016 12 N -0.322 5.322 13 C 0.126 3.874 14 N -0.779 5.779 15 S 2.788 3.212 16 O -0.915 6.915 17 O -0.956 6.956 18 C -0.723 4.723 19 C -0.013 4.013 20 C -0.154 4.154 21 C -0.070 4.070 22 C -0.041 4.041 23 C 0.083 3.917 24 O -0.214 6.214 25 C 0.100 3.900 26 O -0.225 6.225 27 C -0.266 4.266 28 H 0.095 0.905 29 H 0.122 0.878 30 H 0.145 0.855 31 H 0.263 0.737 32 H 0.178 0.822 33 H 0.163 0.837 34 H 0.157 0.843 35 H 0.109 0.891 36 H 0.154 0.846 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.225 -7.468 -10.384 12.793 hybrid contribution 1.293 2.304 -0.408 2.674 sum 1.069 -5.164 -10.792 12.011 Atomic orbital electron populations 1.69778 1.07772 1.29653 1.33180 1.26014 0.94782 1.01710 0.91839 0.86196 0.81004 0.80448 0.78784 1.18198 1.19544 1.19735 1.19677 0.98019 0.90722 1.39501 0.89759 1.17636 0.89899 0.92355 0.86552 1.21569 1.05189 0.93734 1.10402 1.21221 0.89874 0.97086 0.93447 1.66675 1.17014 1.26276 1.22213 1.17670 0.86055 0.91721 0.91940 1.52995 1.37104 1.25249 1.62550 1.01885 0.72581 0.73120 0.73613 1.93588 1.85202 1.65700 1.47059 1.93597 1.45871 1.83771 1.72352 1.29874 1.24763 1.08954 1.08746 1.20837 0.91020 0.90675 0.98728 1.21044 0.99659 1.01194 0.93511 1.20297 0.97808 0.91811 0.97126 1.19742 1.00664 0.96703 0.87032 1.19079 0.92509 0.87122 0.92997 1.87456 1.47621 1.37172 1.49111 1.25772 0.88915 0.85929 0.89432 1.87352 1.80757 1.22430 1.31937 1.21648 1.01658 0.95811 1.07517 0.90475 0.87802 0.85484 0.73701 0.82218 0.83654 0.84316 0.89112 0.84621 0.85124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.62 10.84 55.55 0.60 -18.02 16 2 C 0.08 1.78 5.21 -17.35 -0.09 1.69 16 3 Si 0.91 17.19 29.59 -169.99 -5.03 12.16 16 4 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 5 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 6 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 7 C -0.45 -10.97 9.12 -37.65 -0.34 -11.31 16 8 H 0.08 1.97 7.90 -52.48 -0.41 1.55 16 9 C 0.14 3.59 5.62 -106.56 -0.60 2.99 16 10 C -0.28 -6.46 9.85 -39.07 -0.38 -6.84 16 11 C 0.14 2.92 11.10 -18.04 -0.20 2.72 16 12 N -0.60 -13.49 8.37 -12.82 -0.11 -13.59 16 13 C 0.35 8.00 7.35 -154.98 -1.14 6.86 16 14 N -1.03 -20.39 5.84 31.09 0.18 -20.21 16 15 S 2.70 51.93 5.33 -107.50 -0.57 51.35 16 16 O -0.93 -19.56 15.65 -57.17 -0.89 -20.46 16 17 O -0.97 -19.62 17.93 -57.17 -1.03 -20.65 16 18 C -0.64 -11.06 5.75 -39.47 -0.23 -11.29 16 19 C 0.01 0.10 9.54 -39.57 -0.38 -0.28 16 20 C -0.14 -1.62 10.04 -39.58 -0.40 -2.01 16 21 C -0.05 -0.63 10.06 -39.47 -0.40 -1.03 16 22 C 0.00 0.05 7.15 -39.08 -0.28 -0.23 16 23 C 0.13 2.18 6.79 -39.08 -0.27 1.92 16 24 O -0.30 -4.76 11.39 -45.71 -0.52 -5.28 16 25 C 0.21 2.49 8.89 101.05 0.90 3.39 16 26 O -0.31 -4.21 11.40 -45.70 -0.52 -4.73 16 27 C -0.24 -5.81 8.64 -38.43 -0.33 -6.14 16 28 H 0.28 6.12 8.29 -40.82 -0.34 5.78 16 29 H 0.10 2.15 8.06 -52.48 -0.42 1.73 16 30 H 0.13 2.28 8.06 -52.48 -0.42 1.86 16 31 H 0.43 7.50 8.82 -34.47 -0.30 7.20 16 32 H 0.16 2.26 7.33 -52.49 -0.38 1.88 16 33 H 0.15 1.20 8.06 -52.48 -0.42 0.78 16 34 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.14 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.13 3.21 6.11 -52.48 -0.32 2.89 16 LS Contribution 339.76 15.07 5.12 5.12 Total: -1.00 -31.91 339.76 -10.00 -41.91 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -3.10 Total: 11.95 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -4.13 Total: -19.56 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: 0.68 Total: -51.82 kcal Atomic # 8 Polarization: -48.15 SS G_CDS: -2.96 Total: -51.11 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.16 kcal Atomic # 16 Polarization: 51.93 SS G_CDS: -0.57 Total: 51.35 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.91 -10.00 -41.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568535032.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.124 kcal (2) G-P(sol) polarization free energy of solvation -31.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds