Wall clock time and date at job start Wed Apr 1 2020 05:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86806 * 119.99986 * 2 1 4 4 H 1.48502 * 109.47138 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46812 * 299.99775 * 3 2 1 6 6 H 1.48497 * 109.46675 * 59.99838 * 3 2 1 7 7 C 1.40027 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99995 * 196.92876 * 7 2 1 9 9 C 1.41549 * 120.00113 * 16.91679 * 7 2 1 10 10 C 1.41181 * 120.99488 * 202.25550 * 9 7 2 11 11 C 1.36562 * 119.14577 * 179.97438 * 10 9 7 12 12 N 1.32092 * 121.27110 * 359.97438 * 11 10 9 13 13 C 1.32535 * 122.21389 * 0.02562 * 12 11 10 14 14 N 1.39077 * 119.65651 * 179.97438 * 13 12 11 15 15 S 1.65606 * 119.99902 * 354.22390 * 14 13 12 16 16 O 1.42099 * 106.39913 * 47.84820 * 15 14 13 17 17 O 1.42099 * 106.40194 * 180.76516 * 15 14 13 18 18 C 1.76200 * 107.21741 * 294.30936 * 15 14 13 19 19 C 1.38282 * 119.98155 * 115.48079 * 18 15 14 20 20 C 1.38215 * 120.13710 * 179.97438 * 19 18 15 21 21 C 1.38273 * 120.14688 * 0.02562 * 20 19 18 22 22 C 1.38500 * 120.03007 * 359.97438 * 21 20 19 23 23 C 1.38499 * 119.98488 * 295.20014 * 18 15 14 24 24 O 1.36505 * 131.53987 * 0.67309 * 23 18 15 25 25 C 1.43986 * 105.55842 * 162.24348 * 24 23 18 26 26 O 1.36504 * 131.54230 * 180.02562 * 22 21 20 27 27 C 1.38739 * 120.68525 * 0.25788 * 13 12 11 28 28 H 0.96998 * 120.00285 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.43052 * 0.02562 * 10 9 7 30 30 H 1.08003 * 119.36129 * 179.97438 * 11 10 9 31 31 H 0.96994 * 120.00175 * 174.50127 * 14 13 12 32 32 H 1.07996 * 119.93030 * 359.94748 * 19 18 15 33 33 H 1.08006 * 119.92236 * 179.97438 * 20 19 18 34 34 H 1.08000 * 119.98415 * 179.97438 * 21 20 19 35 35 H 1.09001 * 110.57678 * 268.32650 * 25 24 23 36 36 H 1.09000 * 110.69885 * 145.51291 * 25 24 23 37 37 H 1.08003 * 120.66597 * 179.74320 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3464 0.0006 5 1 1.8827 2.3964 -1.2125 6 1 1.8826 2.3964 1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 3.0525 -1.2330 0.2718 9 6 1.3458 -2.4118 -0.3578 10 6 1.8395 -3.6668 0.0599 11 6 1.1707 -4.7999 -0.3060 12 7 0.0744 -4.7420 -1.0404 13 6 -0.4346 -3.5928 -1.4609 14 7 -1.5917 -3.5938 -2.2323 15 16 -2.2462 -5.0273 -2.7413 16 8 -2.2947 -5.8736 -1.6009 17 8 -3.3933 -4.6939 -3.5110 18 6 -1.0948 -5.7598 -3.8559 19 6 -0.4855 -6.9580 -3.5315 20 6 0.4178 -7.5357 -4.4036 21 6 0.7166 -6.9178 -5.6040 22 6 0.1102 -5.7175 -5.9355 23 6 -0.8047 -5.1381 -5.0591 24 8 -1.2535 -3.9708 -5.6061 25 6 -0.3079 -3.6402 -6.6404 26 8 0.2271 -4.9176 -7.0354 27 6 0.1783 -2.3890 -1.1442 28 1 -0.4850 0.8400 -0.0004 29 1 2.7340 -3.7300 0.6618 30 1 1.5455 -5.7618 0.0113 31 1 -2.0132 -2.7548 -2.4756 32 1 -0.7157 -7.4432 -2.5945 33 1 0.8919 -8.4715 -4.1466 34 1 1.4231 -7.3713 -6.2833 35 1 0.4811 -2.9990 -6.2474 36 1 -0.8084 -3.1588 -7.4805 37 1 -0.2343 -1.4529 -1.4904 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568535032.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:08 Heat of formation + Delta-G solvation = -91.079657 kcal Electronic energy + Delta-G solvation = -28543.539090 eV Core-core repulsion = 24378.277725 eV Total energy + Delta-G solvation = -4165.261365 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.35010 -40.47565 -38.97531 -38.31178 -37.51298 -37.01748 -36.47871 -35.56635 -32.47490 -32.08647 -31.12094 -30.02587 -27.93830 -26.93056 -24.67974 -24.16975 -23.82501 -23.20909 -20.83949 -19.95254 -19.25348 -19.14041 -18.88158 -18.56259 -17.74034 -17.69964 -17.00642 -16.82609 -16.22490 -16.05922 -15.86925 -15.69882 -15.39317 -14.87915 -14.85464 -14.77476 -14.35700 -14.22223 -14.05013 -13.69970 -13.48558 -13.35674 -13.24029 -13.11462 -13.03115 -12.92053 -12.69547 -12.30742 -12.08968 -11.94080 -11.89106 -11.71999 -11.22858 -10.44224 -9.99633 -9.94244 -9.25978 -9.01359 -8.68538 -6.57760 -0.77747 -0.36687 -0.00252 0.90498 0.98912 1.40398 1.52391 1.53809 1.56236 1.74567 2.17876 2.26122 2.31241 2.58521 2.76833 3.21275 3.46220 3.59161 3.68685 3.74584 3.84323 4.04520 4.09019 4.17180 4.28806 4.54573 4.59169 4.76838 4.87907 4.93456 5.04091 5.10965 5.14407 5.16542 5.29345 5.31698 5.56456 5.83944 5.89396 5.95470 6.21946 6.56254 6.80663 6.82217 7.58507 8.22734 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.012453 B = 0.004058 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.861478 B = 6898.076798 C = 7372.823427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.039 3.961 3 Si 0.985 3.015 4 H -0.254 1.254 5 H -0.265 1.265 6 H -0.267 1.267 7 C -0.478 4.478 8 H 0.088 0.912 9 C 0.116 3.884 10 C -0.297 4.297 11 C 0.135 3.865 12 N -0.602 5.602 13 C 0.353 3.647 14 N -1.028 6.028 15 S 2.709 3.291 16 O -0.951 6.951 17 O -0.984 6.984 18 C -0.656 4.656 19 C -0.010 4.010 20 C -0.118 4.118 21 C -0.041 4.041 22 C -0.008 4.008 23 C 0.102 3.898 24 O -0.323 6.323 25 C 0.201 3.799 26 O -0.311 6.311 27 C -0.262 4.262 28 H 0.292 0.708 29 H 0.120 0.880 30 H 0.166 0.834 31 H 0.432 0.568 32 H 0.163 0.837 33 H 0.191 0.809 34 H 0.179 0.821 35 H 0.101 0.899 36 H 0.173 0.827 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.195 -7.327 -11.298 13.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.179 4.179 3 Si 0.806 3.194 4 H -0.178 1.178 5 H -0.189 1.189 6 H -0.192 1.192 7 C -0.508 4.508 8 H 0.106 0.894 9 C 0.108 3.892 10 C -0.321 4.321 11 C -0.017 4.017 12 N -0.325 5.325 13 C 0.127 3.873 14 N -0.778 5.778 15 S 2.801 3.199 16 O -0.941 6.941 17 O -0.975 6.975 18 C -0.745 4.745 19 C -0.029 4.029 20 C -0.137 4.137 21 C -0.060 4.060 22 C -0.053 4.053 23 C 0.055 3.945 24 O -0.239 6.239 25 C 0.091 3.909 26 O -0.227 6.227 27 C -0.290 4.290 28 H 0.103 0.897 29 H 0.138 0.862 30 H 0.183 0.817 31 H 0.269 0.731 32 H 0.180 0.820 33 H 0.208 0.792 34 H 0.196 0.804 35 H 0.118 0.882 36 H 0.190 0.810 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.634 -8.353 -11.441 14.260 hybrid contribution 0.716 2.478 -0.144 2.584 sum 2.350 -5.875 -11.586 13.201 Atomic orbital electron populations 1.69827 1.09224 1.31036 1.33393 1.26861 0.95458 1.04800 0.90810 0.85103 0.79591 0.75807 0.78937 1.17752 1.18923 1.19167 1.19963 0.98404 0.91662 1.40754 0.89425 1.18048 0.90470 0.93667 0.87052 1.21793 1.06003 0.93427 1.10872 1.21836 0.89128 0.98427 0.92284 1.66845 1.17408 1.25842 1.22402 1.17781 0.86391 0.91518 0.91622 1.52974 1.36295 1.26067 1.62486 1.01268 0.72689 0.72512 0.73390 1.93544 1.85917 1.66004 1.48610 1.93562 1.47411 1.84012 1.72495 1.29479 1.25839 1.10425 1.08795 1.21109 0.91859 0.90211 0.99747 1.21558 0.97761 1.02060 0.92296 1.20886 0.97115 0.90425 0.97528 1.20122 1.00581 0.97628 0.86965 1.19309 0.93740 0.87906 0.93560 1.87413 1.48984 1.37327 1.50163 1.26258 0.89174 0.85513 0.89956 1.87328 1.80854 1.22902 1.31645 1.21618 1.02568 0.95963 1.08874 0.89681 0.86244 0.81689 0.73096 0.81974 0.79161 0.80368 0.88159 0.80965 0.86270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.53 10.84 21.84 0.24 -39.29 16 2 C 0.04 1.79 5.21 85.29 0.44 2.24 16 3 Si 0.99 35.04 29.59 68.60 2.03 37.07 16 4 H -0.25 -8.78 7.11 99.48 0.71 -8.07 16 5 H -0.26 -9.08 7.11 99.48 0.71 -8.38 16 6 H -0.27 -9.20 7.11 99.48 0.71 -8.49 16 7 C -0.48 -23.71 9.12 23.52 0.21 -23.50 16 8 H 0.09 4.13 7.90 -2.91 -0.02 4.10 16 9 C 0.12 5.90 5.62 -21.12 -0.12 5.78 16 10 C -0.30 -13.42 9.85 22.60 0.22 -13.20 16 11 C 0.14 5.67 11.10 84.26 0.94 6.61 16 12 N -0.60 -27.05 8.37 -194.47 -1.63 -28.68 16 13 C 0.35 16.46 7.35 132.90 0.98 17.44 16 14 N -1.03 -42.32 5.84 -55.56 -0.32 -42.64 16 15 S 2.71 107.00 5.33 -56.49 -0.30 106.70 16 16 O -0.95 -40.99 15.65 -128.00 -2.00 -42.99 16 17 O -0.98 -41.40 17.93 -128.00 -2.30 -43.69 16 18 C -0.66 -22.68 5.75 22.34 0.13 -22.55 16 19 C -0.01 -0.28 9.54 22.27 0.21 -0.07 16 20 C -0.12 -2.40 10.04 22.27 0.22 -2.18 16 21 C -0.04 -0.86 10.06 22.34 0.22 -0.64 16 22 C -0.01 -0.22 7.15 22.59 0.16 -0.06 16 23 C 0.10 3.40 6.79 22.59 0.15 3.55 16 24 O -0.32 -10.40 11.39 -76.11 -0.87 -11.26 16 25 C 0.20 4.56 8.89 113.37 1.01 5.56 16 26 O -0.31 -7.94 11.40 -76.10 -0.87 -8.81 16 27 C -0.26 -13.20 8.64 23.01 0.20 -13.00 16 28 H 0.29 12.79 8.29 -92.71 -0.77 12.03 16 29 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 30 H 0.17 5.52 8.06 -2.91 -0.02 5.49 16 31 H 0.43 16.13 8.82 -96.75 -0.85 15.27 16 32 H 0.16 4.41 7.33 -2.91 -0.02 4.39 16 33 H 0.19 2.10 8.06 -2.91 -0.02 2.08 16 34 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 35 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.17 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.12 6.15 6.11 -2.91 -0.02 6.13 16 Total: -1.00 -70.79 339.76 -0.73 -71.52 By element: Atomic # 1 Polarization: 35.79 SS G_CDS: 0.30 Total: 36.09 kcal Atomic # 6 Polarization: -39.00 SS G_CDS: 4.99 Total: -34.02 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -1.72 Total: -110.61 kcal Atomic # 8 Polarization: -100.72 SS G_CDS: -6.03 Total: -106.76 kcal Atomic # 14 Polarization: 35.04 SS G_CDS: 2.03 Total: 37.07 kcal Atomic # 16 Polarization: 107.00 SS G_CDS: -0.30 Total: 106.70 kcal Total: -70.79 -0.73 -71.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568535032.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.556 kcal (2) G-P(sol) polarization free energy of solvation -70.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds