Wall clock time and date at job start Wed Apr 1 2020 06:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47438 * 0.02562 * 8 6 4 10 10 H 1.48491 * 109.47045 * 120.00577 * 8 6 4 11 11 H 1.48501 * 109.46950 * 240.00369 * 8 6 4 12 12 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 13 13 C 1.46498 * 119.99673 * 60.00290 * 12 2 1 14 14 S 1.65593 * 119.99939 * 239.99810 * 12 2 1 15 15 O 1.42101 * 106.40455 * 203.53915 * 14 12 2 16 16 O 1.42093 * 106.40554 * 336.46252 * 14 12 2 17 17 N 1.65604 * 107.21648 * 90.00264 * 14 12 2 18 18 C 1.46498 * 120.00179 * 64.99772 * 17 14 12 19 19 H 1.08997 * 109.47168 * 335.00213 * 18 17 14 20 20 C 1.50705 * 109.47035 * 94.99984 * 18 17 14 21 21 O 1.20821 * 119.99889 * 359.97438 * 20 18 17 22 22 O 1.34228 * 120.00036 * 180.02562 * 20 18 17 23 23 C 1.50697 * 109.47238 * 215.00200 * 18 17 14 24 24 C 1.33386 * 125.20539 * 140.00361 * 23 18 17 25 25 C 1.38426 * 114.92473 * 179.97438 * 24 23 18 26 26 C 1.33386 * 114.91916 * 359.97438 * 25 24 23 27 27 S 1.75880 * 125.20239 * 319.69149 * 23 18 17 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 30 30 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 31 31 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 32 32 H 1.08992 * 109.47421 * 89.99857 * 13 12 2 33 33 H 1.09007 * 109.46720 * 209.99867 * 13 12 2 34 34 H 1.09003 * 109.47218 * 329.99648 * 13 12 2 35 35 H 0.96993 * 119.99707 * 244.99768 * 17 14 12 36 36 H 0.96700 * 117.00381 * 179.97438 * 22 20 18 37 37 H 1.08003 * 122.53626 * 359.97438 * 24 23 18 38 38 H 1.07991 * 122.53856 * 180.02562 * 25 24 23 39 39 H 1.07998 * 125.20428 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.1454 -2.2876 -3.6039 10 1 1.1659 -1.5865 -4.8160 11 1 3.1464 -0.1873 -4.8165 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4279 14 16 2.9704 0.1141 2.2862 15 8 3.7119 -0.8789 2.9814 16 8 3.5794 1.1829 1.5748 17 7 1.9607 0.8090 3.3998 18 6 1.1510 -0.0353 4.2817 19 1 0.9876 -1.0035 3.8084 20 6 1.8719 -0.2312 5.5905 21 8 2.9514 0.2814 5.7682 22 8 1.3151 -0.9760 6.5585 23 6 -0.1770 0.6307 4.5344 24 6 -1.3535 0.0044 4.5881 25 6 -2.4406 0.8252 4.8341 26 6 -2.1469 2.1181 4.9807 27 16 -0.4119 2.3516 4.8113 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 0.7092 1.1618 -3.4843 32 1 2.4157 -2.7377 0.9716 33 1 1.6238 -2.2853 2.5002 34 1 0.6904 -2.3002 0.9846 35 1 1.9054 1.7749 3.4681 36 1 1.8154 -1.0732 7.3803 37 1 -1.4505 -1.0624 4.4501 38 1 -3.4499 0.4474 4.9030 39 1 -2.8644 2.9012 5.1766 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574330406.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:46:37 Heat of formation + Delta-G solvation = -116.753801 kcal Electronic energy + Delta-G solvation = -27652.917429 eV Core-core repulsion = 23621.986701 eV Total energy + Delta-G solvation = -4030.930728 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.49090 -38.11002 -36.79369 -36.37902 -36.25108 -35.30734 -35.21146 -32.62406 -30.33240 -29.15551 -26.97980 -25.68023 -25.15948 -23.89513 -21.79521 -20.94706 -19.99640 -18.64689 -18.57325 -17.74999 -17.36401 -17.21690 -16.69803 -16.11443 -15.81141 -15.62407 -15.25651 -14.89091 -14.37150 -13.64834 -13.54018 -13.27577 -13.15488 -13.02862 -12.86922 -12.76838 -12.28839 -12.07838 -11.79919 -11.68402 -11.58743 -11.55160 -11.38784 -11.28154 -11.09774 -11.01305 -10.91536 -10.82706 -10.51241 -10.29613 -10.09720 -9.80908 -9.27808 -8.93943 -8.63996 -8.47751 -8.06161 -6.09020 -4.15616 0.70380 0.99171 1.37210 1.77857 2.04509 2.51655 2.77968 3.27131 3.35438 3.37264 3.41109 3.98619 4.25559 4.39261 4.59798 4.79231 4.87709 5.03308 5.19450 5.22690 5.36449 5.45133 5.57928 5.86922 6.02126 6.03782 6.23754 6.27649 6.33904 6.54792 6.71873 6.74791 6.84601 6.99422 7.39575 7.60137 7.74953 7.76143 8.01755 8.24677 8.86787 9.50391 10.96726 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.014003 B = 0.004242 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.059260 B = 6599.853423 C = 7626.615871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.267 3.733 3 H 0.060 0.940 4 C -0.519 4.519 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.987 5.987 13 C 0.105 3.895 14 S 2.775 3.225 15 O -0.984 6.984 16 O -0.961 6.961 17 N -1.110 6.110 18 C 0.251 3.749 19 H 0.136 0.864 20 C 0.466 3.534 21 O -0.487 6.487 22 O -0.510 6.510 23 C -0.197 4.197 24 C -0.100 4.100 25 C -0.135 4.135 26 C -0.203 4.203 27 S 0.122 5.878 28 H 0.034 0.966 29 H 0.012 0.988 30 H 0.093 0.907 31 H 0.263 0.737 32 H 0.054 0.946 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.417 0.583 36 H 0.410 0.590 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.638 -1.131 17.496 19.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.164 3.836 3 H 0.078 0.922 4 C -0.559 4.559 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.831 5.831 13 C -0.041 4.041 14 S 2.783 3.217 15 O -0.967 6.967 16 O -0.945 6.945 17 N -0.865 5.865 18 C 0.138 3.862 19 H 0.153 0.847 20 C 0.304 3.696 21 O -0.372 6.372 22 O -0.321 6.321 23 C -0.316 4.316 24 C -0.132 4.132 25 C -0.165 4.165 26 C -0.339 4.339 27 S 0.386 5.614 28 H 0.053 0.947 29 H 0.031 0.969 30 H 0.112 0.888 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.251 0.749 36 H 0.269 0.731 37 H 0.165 0.835 38 H 0.162 0.838 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.674 0.311 17.097 18.357 hybrid contribution -0.812 -1.267 -0.390 1.554 sum -7.486 -0.957 16.708 18.333 Atomic orbital electron populations 1.22110 0.98042 0.99738 1.00803 1.18794 0.91435 0.93039 0.80290 0.92250 1.21353 1.31602 1.13034 0.89934 0.91835 1.24904 0.94943 0.94999 0.99009 1.69867 1.36560 1.22671 1.23709 0.86439 0.78595 0.79679 0.82681 1.19720 1.21002 1.20900 1.57764 1.70079 1.19670 1.35563 1.21246 1.02322 0.82197 0.98320 1.02284 0.73532 0.73514 0.72361 1.93573 1.68430 1.60395 1.74294 1.93634 1.73542 1.55954 1.71368 1.56470 1.61866 1.17453 1.50759 1.18219 0.85295 0.96033 0.86677 0.84686 1.23816 0.84425 0.75366 0.86020 1.90740 1.20895 1.45714 1.79886 1.84505 1.53406 1.66612 1.27613 1.24022 0.97088 0.97553 1.12940 1.20128 0.90422 1.01767 1.00842 1.20148 1.00350 0.92506 1.03503 1.25726 0.98239 1.00789 1.09191 1.84374 1.02904 1.04817 1.69351 0.94732 0.96862 0.88836 0.92734 0.92725 0.93761 0.90469 0.74858 0.73089 0.83472 0.83792 0.81573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 8.95 37.16 0.33 -2.87 16 2 C 0.27 6.36 2.62 -69.08 -0.18 6.18 16 3 H 0.06 1.58 6.91 -51.93 -0.36 1.22 16 4 C -0.52 -13.72 8.37 -34.44 -0.29 -14.01 16 5 H 0.06 1.67 7.65 -52.49 -0.40 1.27 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.38 11.32 55.43 0.63 -23.75 16 8 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.99 -19.82 3.12 -115.85 -0.36 -20.19 16 13 C 0.11 1.76 9.32 59.85 0.56 2.31 16 14 S 2.77 55.42 6.00 -107.50 -0.65 54.78 16 15 O -0.98 -20.82 16.97 -57.17 -0.97 -21.79 16 16 O -0.96 -22.77 16.70 -57.17 -0.95 -23.72 16 17 N -1.11 -17.64 5.01 -6.88 -0.03 -17.68 16 18 C 0.25 3.36 3.13 -70.23 -0.22 3.14 16 19 H 0.14 1.61 6.09 -51.93 -0.32 1.29 16 20 C 0.47 6.36 7.68 36.01 0.28 6.63 16 21 O -0.49 -8.21 17.19 -18.75 -0.32 -8.53 16 22 O -0.51 -5.01 13.34 -39.25 -0.52 -5.54 16 23 C -0.20 -2.32 5.37 -36.01 -0.19 -2.51 16 24 C -0.10 -1.00 10.04 -41.21 -0.41 -1.41 16 25 C -0.13 -1.20 10.18 -41.21 -0.42 -1.62 16 26 C -0.20 -1.84 11.23 29.04 0.33 -1.52 16 27 S 0.12 1.33 22.39 -107.50 -2.41 -1.07 16 28 H 0.03 0.70 6.66 -51.93 -0.35 0.35 16 29 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 2.29 6.07 -51.93 -0.32 1.97 16 31 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.04 0.59 6.17 -51.92 -0.32 0.27 16 34 H 0.08 1.21 6.43 -51.93 -0.33 0.88 16 35 H 0.42 6.16 7.97 -34.47 -0.27 5.89 16 36 H 0.41 2.28 9.10 45.56 0.41 2.70 16 37 H 0.15 1.19 8.06 -52.48 -0.42 0.77 16 38 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 356.91 15.07 5.38 5.38 Total: -1.00 -34.80 356.91 -9.05 -43.85 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -3.50 Total: 6.45 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -0.32 Total: -4.07 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: 0.23 Total: -61.61 kcal Atomic # 8 Polarization: -56.81 SS G_CDS: -2.77 Total: -59.58 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 56.76 SS G_CDS: -3.05 Total: 53.70 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.80 -9.05 -43.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574330406.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.901 kcal (2) G-P(sol) polarization free energy of solvation -34.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds