Wall clock time and date at job start Wed Apr 1 2020 06:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47438 * 0.02562 * 8 6 4 10 10 H 1.48491 * 109.47045 * 120.00577 * 8 6 4 11 11 H 1.48501 * 109.46950 * 240.00369 * 8 6 4 12 12 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 13 13 C 1.46498 * 119.99673 * 60.00290 * 12 2 1 14 14 S 1.65593 * 119.99939 * 239.99810 * 12 2 1 15 15 O 1.42101 * 106.40455 * 203.53915 * 14 12 2 16 16 O 1.42093 * 106.40554 * 336.46252 * 14 12 2 17 17 N 1.65604 * 107.21648 * 90.00264 * 14 12 2 18 18 C 1.46498 * 120.00179 * 64.99772 * 17 14 12 19 19 H 1.08997 * 109.47168 * 335.00213 * 18 17 14 20 20 C 1.50705 * 109.47035 * 94.99984 * 18 17 14 21 21 O 1.20821 * 119.99889 * 359.97438 * 20 18 17 22 22 O 1.34228 * 120.00036 * 180.02562 * 20 18 17 23 23 C 1.50697 * 109.47238 * 215.00200 * 18 17 14 24 24 C 1.33386 * 125.20539 * 140.00361 * 23 18 17 25 25 C 1.38426 * 114.92473 * 179.97438 * 24 23 18 26 26 C 1.33386 * 114.91916 * 359.97438 * 25 24 23 27 27 S 1.75880 * 125.20239 * 319.69149 * 23 18 17 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 30 30 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 31 31 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 32 32 H 1.08992 * 109.47421 * 89.99857 * 13 12 2 33 33 H 1.09007 * 109.46720 * 209.99867 * 13 12 2 34 34 H 1.09003 * 109.47218 * 329.99648 * 13 12 2 35 35 H 0.96993 * 119.99707 * 244.99768 * 17 14 12 36 36 H 0.96700 * 117.00381 * 179.97438 * 22 20 18 37 37 H 1.08003 * 122.53626 * 359.97438 * 24 23 18 38 38 H 1.07991 * 122.53856 * 180.02562 * 25 24 23 39 39 H 1.07998 * 125.20428 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.1454 -2.2876 -3.6039 10 1 1.1659 -1.5865 -4.8160 11 1 3.1464 -0.1873 -4.8165 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4279 14 16 2.9704 0.1141 2.2862 15 8 3.7119 -0.8789 2.9814 16 8 3.5794 1.1829 1.5748 17 7 1.9607 0.8090 3.3998 18 6 1.1510 -0.0353 4.2817 19 1 0.9876 -1.0035 3.8084 20 6 1.8719 -0.2312 5.5905 21 8 2.9514 0.2814 5.7682 22 8 1.3151 -0.9760 6.5585 23 6 -0.1770 0.6307 4.5344 24 6 -1.3535 0.0044 4.5881 25 6 -2.4406 0.8252 4.8341 26 6 -2.1469 2.1181 4.9807 27 16 -0.4119 2.3516 4.8113 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 0.7092 1.1618 -3.4843 32 1 2.4157 -2.7377 0.9716 33 1 1.6238 -2.2853 2.5002 34 1 0.6904 -2.3002 0.9846 35 1 1.9054 1.7749 3.4681 36 1 1.8154 -1.0732 7.3803 37 1 -1.4505 -1.0624 4.4501 38 1 -3.4499 0.4474 4.9030 39 1 -2.8644 2.9012 5.1766 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574330406.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:46:36 Heat of formation + Delta-G solvation = -143.851557 kcal Electronic energy + Delta-G solvation = -27654.092476 eV Core-core repulsion = 23621.986701 eV Total energy + Delta-G solvation = -4032.105775 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.51552 -38.90636 -38.44811 -37.94804 -37.35641 -37.00654 -36.32570 -34.53563 -31.30106 -30.91822 -27.91723 -27.27695 -27.00813 -24.68615 -22.77920 -22.67715 -21.08967 -19.89895 -19.54413 -18.94001 -18.76213 -18.52045 -18.26241 -17.66251 -17.11033 -16.78759 -16.52060 -16.17356 -15.73230 -15.21145 -14.88725 -14.62670 -14.46696 -14.15977 -13.85146 -13.75788 -13.53767 -13.45955 -13.29523 -13.17312 -13.14604 -12.98100 -12.92513 -12.77879 -12.59937 -12.58532 -12.29987 -12.17531 -12.12181 -11.91255 -11.67267 -11.16532 -11.01694 -10.49161 -9.77249 -9.67619 -9.43348 -8.10282 -6.23446 -0.57133 -0.03770 0.57470 1.00034 1.06664 1.42782 1.46343 1.56184 1.68327 1.76953 2.12441 2.43921 2.53762 3.18560 3.26769 3.29676 3.57835 3.93912 4.12087 4.27073 4.29962 4.64358 4.65525 4.74436 4.83440 5.02117 5.05958 5.16468 5.17064 5.20167 5.32665 5.47965 5.52598 5.57180 5.64387 5.78049 5.88591 6.15136 6.31685 6.84119 6.87330 7.45561 8.94103 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.014003 B = 0.004242 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.059260 B = 6599.853423 C = 7626.615871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.272 3.728 3 H 0.023 0.977 4 C -0.536 4.536 5 H 0.058 0.942 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.954 3.046 9 H -0.270 1.270 10 H -0.274 1.274 11 H -0.287 1.287 12 N -0.989 5.989 13 C 0.096 3.904 14 S 2.792 3.208 15 O -0.998 6.998 16 O -1.007 7.007 17 N -1.103 6.103 18 C 0.243 3.757 19 H 0.152 0.848 20 C 0.471 3.529 21 O -0.529 6.529 22 O -0.494 6.494 23 C -0.220 4.220 24 C -0.089 4.089 25 C -0.140 4.140 26 C -0.192 4.192 27 S 0.078 5.922 28 H 0.049 0.951 29 H 0.036 0.964 30 H 0.065 0.935 31 H 0.264 0.736 32 H 0.046 0.954 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.421 0.579 36 H 0.430 0.570 37 H 0.170 0.830 38 H 0.173 0.827 39 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.788 -2.685 18.542 21.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.168 3.832 3 H 0.041 0.959 4 C -0.576 4.576 5 H 0.076 0.924 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.780 3.220 9 H -0.194 1.194 10 H -0.199 1.199 11 H -0.213 1.213 12 N -0.833 5.833 13 C -0.050 4.050 14 S 2.801 3.199 15 O -0.981 6.981 16 O -0.991 6.991 17 N -0.862 5.862 18 C 0.131 3.869 19 H 0.169 0.831 20 C 0.311 3.689 21 O -0.417 6.417 22 O -0.307 6.307 23 C -0.338 4.338 24 C -0.121 4.121 25 C -0.169 4.169 26 C -0.328 4.328 27 S 0.341 5.659 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.257 0.743 36 H 0.293 0.707 37 H 0.187 0.813 38 H 0.191 0.809 39 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -8.838 -1.280 18.179 20.254 hybrid contribution -0.225 -0.804 -0.570 1.011 sum -9.063 -2.084 17.609 19.914 Atomic orbital electron populations 1.21881 0.96225 1.00561 1.00525 1.18474 0.92644 0.91226 0.80846 0.95949 1.21662 1.31600 1.13023 0.91317 0.92408 1.25605 0.95225 0.95690 1.01568 1.69981 1.37316 1.23629 1.24264 0.85568 0.78270 0.78571 0.79572 1.19431 1.19898 1.21293 1.57571 1.69932 1.21061 1.34715 1.21524 1.02649 0.79975 1.00802 1.01482 0.73493 0.72646 0.72273 1.93546 1.69224 1.60858 1.74446 1.93565 1.75212 1.57510 1.72846 1.56009 1.61795 1.17909 1.50469 1.18459 0.85686 0.96400 0.86311 0.83124 1.23838 0.83646 0.74843 0.86618 1.90733 1.22644 1.47564 1.80787 1.84447 1.53082 1.65158 1.28034 1.23859 0.96710 0.97570 1.15666 1.20510 0.89868 1.03030 0.98680 1.20492 1.01369 0.92199 1.02863 1.26075 0.96898 1.01770 1.08048 1.84561 1.05491 1.05480 1.70328 0.93233 0.94542 0.91603 0.92665 0.93504 0.90242 0.89185 0.74319 0.70746 0.81271 0.80934 0.79178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.64 8.95 71.98 0.64 -5.00 16 2 C 0.27 13.04 2.62 44.24 0.12 13.16 16 3 H 0.02 1.25 6.91 -2.39 -0.02 1.23 16 4 C -0.54 -28.49 8.37 25.60 0.21 -28.27 16 5 H 0.06 3.06 7.65 -2.91 -0.02 3.03 16 6 C 0.02 1.02 5.30 84.65 0.45 1.47 16 7 N -0.91 -50.54 11.32 21.45 0.24 -50.30 16 8 Si 0.95 42.81 29.54 68.60 2.03 44.83 16 9 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 12 N -0.99 -39.31 3.12 -520.44 -1.62 -40.93 16 13 C 0.10 3.01 9.32 127.77 1.19 4.20 16 14 S 2.79 112.56 6.00 -56.49 -0.34 112.22 16 15 O -1.00 -42.06 16.97 -128.00 -2.17 -44.23 16 16 O -1.01 -49.58 16.70 -128.00 -2.14 -51.72 16 17 N -1.10 -34.92 5.01 -175.69 -0.88 -35.80 16 18 C 0.24 6.13 3.13 43.50 0.14 6.27 16 19 H 0.15 3.20 6.09 -2.39 -0.01 3.19 16 20 C 0.47 12.22 7.68 71.24 0.55 12.77 16 21 O -0.53 -17.69 17.19 21.98 0.38 -17.32 16 22 O -0.49 -8.51 13.34 -51.39 -0.69 -9.19 16 23 C -0.22 -4.71 5.37 24.59 0.13 -4.58 16 24 C -0.09 -1.47 10.04 21.22 0.21 -1.26 16 25 C -0.14 -1.97 10.18 21.22 0.22 -1.75 16 26 C -0.19 -2.94 11.23 66.72 0.75 -2.19 16 27 S 0.08 1.63 22.39 -56.49 -1.27 0.37 16 28 H 0.05 1.91 6.66 -2.39 -0.02 1.90 16 29 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 3.21 6.07 -2.39 -0.01 3.20 16 31 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.08 1.91 6.17 -2.38 -0.01 1.90 16 34 H 0.09 2.60 6.43 -2.39 -0.02 2.58 16 35 H 0.42 12.76 7.97 -96.75 -0.77 11.99 16 36 H 0.43 3.75 9.10 -74.06 -0.67 3.08 16 37 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 38 H 0.17 1.45 8.06 -2.92 -0.02 1.43 16 39 H 0.19 1.88 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -76.24 356.91 -2.17 -78.41 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -0.32 Total: 18.83 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 4.61 Total: -5.18 kcal Atomic # 7 Polarization: -124.76 SS G_CDS: -2.26 Total: -127.02 kcal Atomic # 8 Polarization: -117.84 SS G_CDS: -4.62 Total: -122.46 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: 114.19 SS G_CDS: -1.60 Total: 112.59 kcal Total: -76.24 -2.17 -78.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574330406.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.440 kcal (2) G-P(sol) polarization free energy of solvation -76.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds