Wall clock time and date at job start Wed Apr 1 2020 06:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31515 * 119.99477 * 180.02562 * 6 4 2 8 8 Si 1.86789 * 119.99942 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.47181 * 90.00449 * 8 6 4 10 10 H 1.48500 * 109.47253 * 209.99840 * 8 6 4 11 11 H 1.48501 * 109.47537 * 330.00117 * 8 6 4 12 12 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 13 13 C 1.46505 * 120.00078 * 299.99998 * 12 2 1 14 14 S 1.65594 * 120.00077 * 119.99765 * 12 2 1 15 15 O 1.42103 * 106.40425 * 203.53865 * 14 12 2 16 16 O 1.42099 * 106.40087 * 336.46170 * 14 12 2 17 17 N 1.65599 * 107.21611 * 90.00286 * 14 12 2 18 18 C 1.46500 * 120.00192 * 65.00044 * 17 14 12 19 19 H 1.08999 * 109.47002 * 335.00219 * 18 17 14 20 20 C 1.50697 * 109.47096 * 95.00059 * 18 17 14 21 21 O 1.20824 * 120.00151 * 359.97438 * 20 18 17 22 22 O 1.34231 * 120.00072 * 179.97438 * 20 18 17 23 23 C 1.50707 * 109.47062 * 214.99835 * 18 17 14 24 24 C 1.33384 * 125.19990 * 139.99760 * 23 18 17 25 25 C 1.38423 * 114.91807 * 179.97438 * 24 23 18 26 26 C 1.33390 * 114.92414 * 0.02562 * 25 24 23 27 27 S 1.75884 * 109.59101 * 359.75194 * 26 25 24 28 28 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 0.97006 * 119.99768 * 179.97438 * 7 6 4 32 32 H 1.09004 * 109.47130 * 89.99894 * 13 12 2 33 33 H 1.08997 * 109.47212 * 209.99646 * 13 12 2 34 34 H 1.09003 * 109.46772 * 330.00259 * 13 12 2 35 35 H 0.97001 * 119.99532 * 244.99771 * 17 14 12 36 36 H 0.96705 * 117.00091 * 179.97438 * 22 20 18 37 37 H 1.08000 * 122.53933 * 0.02562 * 24 23 18 38 38 H 1.08007 * 122.53737 * 180.02562 * 25 24 23 39 39 H 1.07991 * 125.20622 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1382 -0.8591 3.5565 8 14 0.6261 1.2798 2.6541 9 1 -0.8019 0.8745 2.6994 10 1 0.9774 1.9953 3.9071 11 1 0.8493 2.1773 1.4923 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 16 2.9703 0.1142 -2.2863 15 8 2.8227 -0.5646 -3.5259 16 8 2.6903 1.4972 -2.1193 17 7 4.5437 -0.1043 -1.8181 18 6 5.1357 -1.4442 -1.8416 19 1 4.3472 -2.1913 -1.7512 20 6 5.8717 -1.6454 -3.1412 21 8 5.8985 -0.7606 -3.9635 22 8 6.4974 -2.8076 -3.3851 23 6 6.0987 -1.5881 -0.6914 24 6 6.2394 -2.6801 0.0615 25 6 7.1896 -2.5795 1.0630 26 6 7.8203 -1.4057 1.1237 27 16 7.2138 -0.3443 -0.1409 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9042 -0.5275 4.4376 32 1 0.7375 -2.1444 -1.9994 33 1 2.4628 -2.5819 -1.9865 34 1 1.5295 -2.5969 -0.4708 35 1 5.0733 0.6550 -1.5283 36 1 6.9558 -2.8900 -4.2327 37 1 5.6567 -3.5752 -0.0987 38 1 7.4042 -3.3901 1.7438 39 1 8.5884 -1.1478 1.8376 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574330408.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:46:42 Heat of formation + Delta-G solvation = -109.434513 kcal Electronic energy + Delta-G solvation = -27948.410575 eV Core-core repulsion = 23917.797235 eV Total energy + Delta-G solvation = -4030.613340 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.41647 -37.89118 -36.92860 -36.51212 -36.30473 -35.46595 -35.12086 -32.57927 -30.18836 -30.10299 -26.84673 -25.82929 -25.09288 -23.68667 -21.69993 -21.07212 -19.92898 -18.62856 -18.46550 -17.70537 -17.46437 -17.22342 -16.69756 -16.31142 -15.76761 -15.60210 -15.31806 -14.87735 -14.46659 -13.73402 -13.51952 -13.31325 -13.02754 -12.91047 -12.80599 -12.56707 -12.41365 -12.19442 -12.13188 -11.92295 -11.74772 -11.70434 -11.58651 -11.53312 -11.26950 -11.07651 -10.98556 -10.72991 -10.61692 -10.18313 -9.86129 -9.58175 -9.47088 -8.70237 -8.69036 -8.38760 -8.22907 -6.20242 -4.21363 0.87669 0.99399 1.59393 1.99613 2.12071 2.72983 2.83720 3.20471 3.32503 3.33915 3.36657 3.91747 4.30314 4.37515 4.70052 4.73132 5.06749 5.11625 5.12471 5.32396 5.43543 5.60335 5.67239 5.95574 6.07575 6.11431 6.20531 6.28341 6.33589 6.39750 6.46489 6.49024 6.56787 6.77155 6.88447 7.21949 7.28645 7.56533 7.81474 8.37412 8.81676 9.40678 10.91682 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.010791 B = 0.005789 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.029718 B = 4835.213064 C = 6394.355558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.238 3.762 3 H 0.057 0.943 4 C -0.527 4.527 5 H 0.085 0.915 6 C 0.078 3.922 7 N -0.891 5.891 8 Si 0.874 3.126 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.982 5.982 13 C 0.099 3.901 14 S 2.781 3.219 15 O -0.981 6.981 16 O -0.971 6.971 17 N -1.103 6.103 18 C 0.254 3.746 19 H 0.136 0.864 20 C 0.468 3.532 21 O -0.491 6.491 22 O -0.509 6.509 23 C -0.196 4.196 24 C -0.092 4.092 25 C -0.131 4.131 26 C -0.201 4.201 27 S 0.114 5.886 28 H 0.049 0.951 29 H 0.034 0.966 30 H 0.059 0.941 31 H 0.265 0.735 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.090 0.910 35 H 0.419 0.581 36 H 0.409 0.591 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.811 -5.313 -7.404 13.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.133 3.867 3 H 0.075 0.925 4 C -0.566 4.566 5 H 0.103 0.897 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.704 3.296 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.186 1.186 12 N -0.824 5.824 13 C -0.047 4.047 14 S 2.790 3.210 15 O -0.964 6.964 16 O -0.955 6.955 17 N -0.859 5.859 18 C 0.141 3.859 19 H 0.153 0.847 20 C 0.305 3.695 21 O -0.377 6.377 22 O -0.320 6.320 23 C -0.314 4.314 24 C -0.124 4.124 25 C -0.161 4.161 26 C -0.337 4.337 27 S 0.377 5.623 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.108 0.892 35 H 0.253 0.747 36 H 0.268 0.732 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 9.547 -3.186 -8.354 13.080 hybrid contribution -0.289 -0.583 0.802 1.032 sum 9.259 -3.768 -7.552 12.528 Atomic orbital electron populations 1.22413 0.98631 1.01439 0.99255 1.19139 0.91103 0.93446 0.82983 0.92496 1.21161 1.32790 1.14478 0.88155 0.89742 1.24856 0.95484 0.96423 0.95763 1.69868 1.44954 1.40006 0.97943 0.87061 0.80838 0.84087 0.77605 1.20305 1.22169 1.18627 1.57520 1.64070 1.21734 1.39121 1.21365 0.99252 0.81471 1.02587 1.02010 0.72243 0.73470 0.73299 1.93591 1.85524 1.76121 1.41196 1.93605 1.83152 1.32018 1.86769 1.56161 1.32519 1.12885 1.84375 1.18183 0.94378 0.87082 0.86243 0.84701 1.23872 0.76741 0.79724 0.89139 1.90725 1.57019 1.43155 1.46768 1.84523 1.64702 1.38449 1.44289 1.23869 1.04847 0.99231 1.03476 1.20082 0.99044 0.98637 0.94622 1.20131 0.97563 0.98431 0.99986 1.25650 1.06610 0.97492 1.03945 1.84169 1.32859 1.17540 1.27686 0.93222 0.94678 0.92176 0.92484 0.93174 0.93250 0.89180 0.74656 0.73191 0.83589 0.83847 0.81714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 8.68 37.16 0.32 -2.98 16 2 C 0.24 5.31 2.21 -69.08 -0.15 5.15 16 3 H 0.06 1.36 5.97 -51.93 -0.31 1.05 16 4 C -0.53 -13.18 8.57 -34.44 -0.30 -13.48 16 5 H 0.08 2.22 7.58 -52.49 -0.40 1.82 16 6 C 0.08 2.08 5.45 -17.82 -0.10 1.98 16 7 N -0.89 -25.10 13.96 55.43 0.77 -24.33 16 8 Si 0.87 20.78 24.37 -169.99 -4.14 16.64 16 9 H -0.28 -6.36 6.87 56.52 0.39 -5.98 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.26 -6.12 6.53 56.52 0.37 -5.75 16 12 N -0.98 -18.81 3.12 -115.84 -0.36 -19.17 16 13 C 0.10 1.58 9.08 59.85 0.54 2.13 16 14 S 2.78 53.25 6.00 -107.50 -0.65 52.60 16 15 O -0.98 -19.61 16.97 -57.17 -0.97 -20.58 16 16 O -0.97 -21.29 16.70 -57.17 -0.95 -22.24 16 17 N -1.10 -18.37 5.01 -6.88 -0.03 -18.41 16 18 C 0.25 3.72 3.13 -70.23 -0.22 3.51 16 19 H 0.14 1.79 6.09 -51.93 -0.32 1.48 16 20 C 0.47 6.69 7.68 36.00 0.28 6.97 16 21 O -0.49 -8.41 17.19 -18.75 -0.32 -8.73 16 22 O -0.51 -5.39 13.34 -39.26 -0.52 -5.91 16 23 C -0.20 -2.74 5.37 -36.00 -0.19 -2.93 16 24 C -0.09 -1.19 10.04 -41.21 -0.41 -1.60 16 25 C -0.13 -1.57 10.18 -41.21 -0.42 -1.99 16 26 C -0.20 -2.39 11.23 29.04 0.33 -2.06 16 27 S 0.11 1.50 22.39 -107.50 -2.41 -0.91 16 28 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 1.16 7.67 -51.93 -0.40 0.76 16 31 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.66 6.16 -51.93 -0.32 0.34 16 34 H 0.09 1.48 7.02 -51.93 -0.36 1.12 16 35 H 0.42 6.58 7.97 -34.47 -0.27 6.31 16 36 H 0.41 2.51 9.10 45.56 0.41 2.93 16 37 H 0.15 1.62 8.06 -52.49 -0.42 1.19 16 38 H 0.14 1.41 8.06 -52.48 -0.42 0.99 16 39 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 350.77 15.07 5.29 5.29 Total: -1.00 -34.06 350.77 -8.06 -42.12 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -3.43 Total: 8.95 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -0.32 Total: -5.31 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: 0.38 Total: -61.91 kcal Atomic # 8 Polarization: -54.70 SS G_CDS: -2.77 Total: -57.47 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.14 Total: 16.64 kcal Atomic # 16 Polarization: 54.75 SS G_CDS: -3.05 Total: 51.70 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.06 -8.06 -42.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574330408.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.312 kcal (2) G-P(sol) polarization free energy of solvation -34.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds