Wall clock time and date at job start Wed Apr 1 2020 06:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31515 * 119.99477 * 180.02562 * 6 4 2 8 8 Si 1.86789 * 119.99942 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.47181 * 90.00449 * 8 6 4 10 10 H 1.48500 * 109.47253 * 209.99840 * 8 6 4 11 11 H 1.48501 * 109.47537 * 330.00117 * 8 6 4 12 12 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 13 13 C 1.46505 * 120.00078 * 299.99998 * 12 2 1 14 14 S 1.65594 * 120.00077 * 119.99765 * 12 2 1 15 15 O 1.42103 * 106.40425 * 203.53865 * 14 12 2 16 16 O 1.42099 * 106.40087 * 336.46170 * 14 12 2 17 17 N 1.65599 * 107.21611 * 90.00286 * 14 12 2 18 18 C 1.46500 * 120.00192 * 65.00044 * 17 14 12 19 19 H 1.08999 * 109.47002 * 335.00219 * 18 17 14 20 20 C 1.50697 * 109.47096 * 95.00059 * 18 17 14 21 21 O 1.20824 * 120.00151 * 359.97438 * 20 18 17 22 22 O 1.34231 * 120.00072 * 179.97438 * 20 18 17 23 23 C 1.50707 * 109.47062 * 214.99835 * 18 17 14 24 24 C 1.33384 * 125.19990 * 139.99760 * 23 18 17 25 25 C 1.38423 * 114.91807 * 179.97438 * 24 23 18 26 26 C 1.33390 * 114.92414 * 0.02562 * 25 24 23 27 27 S 1.75884 * 109.59101 * 359.75194 * 26 25 24 28 28 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 0.97006 * 119.99768 * 179.97438 * 7 6 4 32 32 H 1.09004 * 109.47130 * 89.99894 * 13 12 2 33 33 H 1.08997 * 109.47212 * 209.99646 * 13 12 2 34 34 H 1.09003 * 109.46772 * 330.00259 * 13 12 2 35 35 H 0.97001 * 119.99532 * 244.99771 * 17 14 12 36 36 H 0.96705 * 117.00091 * 179.97438 * 22 20 18 37 37 H 1.08000 * 122.53933 * 0.02562 * 24 23 18 38 38 H 1.08007 * 122.53737 * 180.02562 * 25 24 23 39 39 H 1.07991 * 125.20622 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1382 -0.8591 3.5565 8 14 0.6261 1.2798 2.6541 9 1 -0.8019 0.8745 2.6994 10 1 0.9774 1.9953 3.9071 11 1 0.8493 2.1773 1.4923 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 16 2.9703 0.1142 -2.2863 15 8 2.8227 -0.5646 -3.5259 16 8 2.6903 1.4972 -2.1193 17 7 4.5437 -0.1043 -1.8181 18 6 5.1357 -1.4442 -1.8416 19 1 4.3472 -2.1913 -1.7512 20 6 5.8717 -1.6454 -3.1412 21 8 5.8985 -0.7606 -3.9635 22 8 6.4974 -2.8076 -3.3851 23 6 6.0987 -1.5881 -0.6914 24 6 6.2394 -2.6801 0.0615 25 6 7.1896 -2.5795 1.0630 26 6 7.8203 -1.4057 1.1237 27 16 7.2138 -0.3443 -0.1409 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9042 -0.5275 4.4376 32 1 0.7375 -2.1444 -1.9994 33 1 2.4628 -2.5819 -1.9865 34 1 1.5295 -2.5969 -0.4708 35 1 5.0733 0.6550 -1.5283 36 1 6.9558 -2.8900 -4.2327 37 1 5.6567 -3.5752 -0.0987 38 1 7.4042 -3.3901 1.7438 39 1 8.5884 -1.1478 1.8376 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574330408.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:46:42 Heat of formation + Delta-G solvation = -136.683168 kcal Electronic energy + Delta-G solvation = -27949.592166 eV Core-core repulsion = 23917.797235 eV Total energy + Delta-G solvation = -4031.794930 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.51156 -38.89303 -38.50533 -38.12089 -37.35614 -37.05762 -36.31224 -34.48912 -31.81749 -31.28948 -27.93028 -27.27779 -26.94899 -24.67746 -22.79442 -22.75669 -21.15144 -19.91892 -19.53811 -19.05837 -18.94317 -18.45950 -18.27541 -17.78732 -17.26519 -16.77927 -16.61475 -16.20886 -15.74269 -15.34550 -14.93928 -14.64219 -14.45446 -14.20780 -14.15848 -13.86170 -13.80506 -13.60945 -13.50094 -13.34730 -13.19521 -13.12632 -12.98975 -12.91649 -12.71557 -12.59560 -12.33237 -12.16717 -11.98703 -11.70912 -11.47062 -11.35314 -11.01735 -10.69339 -9.84068 -9.67641 -9.39788 -8.24238 -6.26075 -0.58016 -0.02616 0.59022 0.99298 1.05278 1.32215 1.42207 1.47972 1.60535 1.76921 2.09633 2.34849 2.47234 3.10770 3.24751 3.26638 3.59890 3.89452 4.08505 4.25622 4.29048 4.47245 4.59732 4.64644 4.67127 4.72784 4.82851 4.89860 5.12222 5.16226 5.24122 5.32964 5.44164 5.47854 5.54018 5.54841 5.61787 5.85110 6.37724 6.78839 6.88044 7.38175 8.90106 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.010791 B = 0.005789 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.029718 B = 4835.213064 C = 6394.355558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.239 3.761 3 H 0.041 0.959 4 C -0.510 4.510 5 H 0.067 0.933 6 C 0.033 3.967 7 N -0.930 5.930 8 Si 0.915 3.085 9 H -0.263 1.263 10 H -0.300 1.300 11 H -0.258 1.258 12 N -0.984 5.984 13 C 0.090 3.910 14 S 2.796 3.204 15 O -0.989 6.989 16 O -1.003 7.003 17 N -1.103 6.103 18 C 0.246 3.754 19 H 0.148 0.852 20 C 0.475 3.525 21 O -0.525 6.525 22 O -0.495 6.495 23 C -0.215 4.215 24 C -0.093 4.093 25 C -0.142 4.142 26 C -0.196 4.196 27 S 0.087 5.913 28 H 0.041 0.959 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.264 0.736 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.421 0.579 36 H 0.431 0.569 37 H 0.163 0.837 38 H 0.167 0.833 39 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.849 -6.341 -7.856 14.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.133 3.867 3 H 0.059 0.941 4 C -0.549 4.549 5 H 0.085 0.915 6 C -0.167 4.167 7 N -0.570 5.570 8 Si 0.744 3.256 9 H -0.188 1.188 10 H -0.228 1.228 11 H -0.183 1.183 12 N -0.826 5.826 13 C -0.055 4.055 14 S 2.804 3.196 15 O -0.972 6.972 16 O -0.987 6.987 17 N -0.861 5.861 18 C 0.134 3.866 19 H 0.165 0.835 20 C 0.314 3.686 21 O -0.414 6.414 22 O -0.308 6.308 23 C -0.333 4.333 24 C -0.125 4.125 25 C -0.172 4.172 26 C -0.331 4.331 27 S 0.350 5.650 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.257 0.743 36 H 0.293 0.707 37 H 0.180 0.820 38 H 0.185 0.815 39 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 9.588 -4.250 -8.842 13.718 hybrid contribution -0.173 -0.394 0.904 1.001 sum 9.415 -4.644 -7.938 13.162 Atomic orbital electron populations 1.22377 0.97149 1.02575 0.99744 1.18919 0.92260 0.92516 0.82974 0.94127 1.21322 1.31217 1.13386 0.89021 0.91452 1.25428 0.96854 0.98592 0.95804 1.69968 1.46982 1.41706 0.98345 0.86382 0.80359 0.81664 0.77216 1.18845 1.22782 1.18288 1.57417 1.64378 1.22950 1.37852 1.21614 1.01151 0.79757 1.02949 1.01428 0.72466 0.72586 0.73082 1.93575 1.85946 1.76092 1.41614 1.93556 1.83970 1.34013 1.87158 1.55926 1.31798 1.14118 1.84297 1.18373 0.95060 0.86109 0.87035 0.83539 1.23719 0.76397 0.80011 0.88479 1.90718 1.58507 1.44416 1.47758 1.84464 1.64103 1.36382 1.45817 1.23857 1.05539 0.99870 1.04059 1.20430 0.99005 0.98867 0.94206 1.20460 0.97295 0.99231 1.00188 1.26024 1.06731 0.96890 1.03485 1.84249 1.33385 1.18480 1.28865 0.94047 0.92830 0.90795 0.92634 0.91471 0.90747 0.89779 0.74335 0.70696 0.81957 0.81515 0.79246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.32 8.68 71.98 0.62 -5.70 16 2 C 0.24 10.41 2.21 44.25 0.10 10.50 16 3 H 0.04 1.93 5.97 -2.39 -0.01 1.91 16 4 C -0.51 -25.28 8.57 25.60 0.22 -25.06 16 5 H 0.07 3.52 7.58 -2.91 -0.02 3.50 16 6 C 0.03 1.73 5.45 84.66 0.46 2.19 16 7 N -0.93 -52.67 13.96 21.45 0.30 -52.37 16 8 Si 0.92 42.20 24.37 68.60 1.67 43.87 16 9 H -0.26 -11.44 6.87 99.48 0.68 -10.75 16 10 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 11 H -0.26 -11.67 6.53 99.48 0.65 -11.03 16 12 N -0.98 -36.36 3.12 -520.42 -1.62 -37.99 16 13 C 0.09 2.69 9.08 127.77 1.16 3.85 16 14 S 2.80 104.90 6.00 -56.49 -0.34 104.57 16 15 O -0.99 -38.28 16.97 -128.00 -2.17 -40.45 16 16 O -1.00 -43.80 16.70 -128.00 -2.14 -45.93 16 17 N -1.10 -36.32 5.01 -175.68 -0.88 -37.20 16 18 C 0.25 6.96 3.13 43.50 0.14 7.09 16 19 H 0.15 3.67 6.09 -2.39 -0.01 3.65 16 20 C 0.47 12.99 7.68 71.23 0.55 13.53 16 21 O -0.53 -17.64 17.19 21.97 0.38 -17.27 16 22 O -0.49 -9.42 13.34 -51.42 -0.69 -10.10 16 23 C -0.21 -5.80 5.37 24.59 0.13 -5.66 16 24 C -0.09 -2.25 10.04 21.21 0.21 -2.04 16 25 C -0.14 -3.13 10.18 21.22 0.22 -2.92 16 26 C -0.20 -4.32 11.23 66.72 0.75 -3.57 16 27 S 0.09 2.25 22.39 -56.49 -1.27 0.98 16 28 H 0.04 1.71 3.27 -2.39 -0.01 1.70 16 29 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.07 2.68 7.67 -2.39 -0.02 2.66 16 31 H 0.26 14.32 8.31 -92.70 -0.77 13.54 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.07 1.82 6.16 -2.39 -0.01 1.81 16 34 H 0.08 2.62 7.02 -2.39 -0.02 2.61 16 35 H 0.42 13.38 7.97 -96.75 -0.77 12.61 16 36 H 0.43 4.26 9.10 -74.05 -0.67 3.59 16 37 H 0.16 3.25 8.06 -2.91 -0.02 3.22 16 38 H 0.17 2.83 8.06 -2.91 -0.02 2.80 16 39 H 0.19 3.08 8.06 -2.92 -0.02 3.06 16 Total: -1.00 -71.83 350.77 -2.59 -74.42 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: -0.39 Total: 25.25 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: 4.56 Total: -7.77 kcal Atomic # 7 Polarization: -125.36 SS G_CDS: -2.20 Total: -127.56 kcal Atomic # 8 Polarization: -109.14 SS G_CDS: -4.62 Total: -113.75 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 1.67 Total: 43.87 kcal Atomic # 16 Polarization: 107.15 SS G_CDS: -1.60 Total: 105.55 kcal Total: -71.83 -2.59 -74.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574330408.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.265 kcal (2) G-P(sol) polarization free energy of solvation -71.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds