Wall clock time and date at job start Wed Apr 1 2020 06:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47101 * 2 1 4 4 N 1.46503 * 109.46779 * 119.99961 * 2 1 3 5 5 S 1.65596 * 120.00064 * 144.40660 * 4 2 1 6 6 O 1.42101 * 106.39920 * 309.98015 * 5 4 2 7 7 O 1.42100 * 106.40409 * 177.06219 * 5 4 2 8 8 C 1.76201 * 107.21878 * 63.51922 * 5 4 2 9 9 C 1.38256 * 120.00159 * 247.43047 * 8 5 4 10 10 C 1.38215 * 120.00167 * 179.97438 * 9 8 5 11 11 C 1.38254 * 120.00117 * 0.02562 * 10 9 8 12 12 C 1.38220 * 119.99605 * 359.70563 * 11 10 9 13 13 C 1.38210 * 119.99879 * 67.41422 * 8 5 4 14 14 S 1.76199 * 120.00213 * 359.97438 * 13 8 5 15 15 O 1.42096 * 106.40376 * 314.22998 * 14 13 8 16 16 O 1.42100 * 106.40307 * 181.30111 * 14 13 8 17 17 N 1.65605 * 107.21178 * 67.76581 * 14 13 8 18 18 C 1.36935 * 120.00456 * 61.44120 * 17 14 13 19 19 H 1.08003 * 119.99591 * 4.87274 * 18 17 14 20 20 C 1.38807 * 120.00261 * 184.87986 * 18 17 14 21 21 N 1.31618 * 120.00029 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99965 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.46681 * 90.00621 * 22 20 18 24 24 H 1.48498 * 109.47448 * 210.00089 * 22 20 18 25 25 H 1.48495 * 109.47389 * 330.00824 * 22 20 18 26 26 H 1.09001 * 109.47091 * 300.00139 * 1 2 3 27 27 H 1.09000 * 109.47258 * 60.00510 * 1 2 3 28 28 H 1.09006 * 109.47283 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46846 * 239.99141 * 2 1 3 30 30 H 1.09001 * 109.47072 * 185.08391 * 3 2 1 31 31 H 1.09008 * 109.46790 * 305.08045 * 3 2 1 32 32 H 1.08992 * 109.47278 * 65.08085 * 3 2 1 33 33 H 0.97003 * 120.00035 * 324.39948 * 4 2 1 34 34 H 1.08001 * 119.99862 * 0.02562 * 9 8 5 35 35 H 1.08004 * 119.99827 * 179.97438 * 10 9 8 36 36 H 1.07989 * 120.00287 * 179.97438 * 11 10 9 37 37 H 1.07998 * 119.99955 * 180.29606 * 12 11 10 38 38 H 0.97002 * 119.99605 * 241.43307 * 17 14 13 39 39 H 0.96996 * 119.99948 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 16 3.3937 -1.6095 1.1184 6 8 3.2367 -2.4729 0.0007 7 8 3.6364 -2.0811 2.4367 8 6 4.7247 -0.5238 0.7253 9 6 5.3622 -0.6259 -0.4973 10 6 6.4059 0.2260 -0.8058 11 6 6.8128 1.1800 0.1084 12 6 6.1719 1.2857 1.3285 13 6 5.1313 0.4300 1.6391 14 16 4.3182 0.5609 3.1968 15 8 2.9240 0.5112 2.9272 16 8 4.9391 1.6386 3.8842 17 7 4.6779 -0.8096 4.0540 18 6 5.9783 -1.0959 4.3735 19 1 6.7606 -0.3902 4.1359 20 6 6.2911 -2.2931 5.0026 21 7 7.5409 -2.5680 5.3101 22 14 4.9378 -3.5134 5.4139 23 1 4.7510 -4.4477 4.2749 24 1 5.3160 -4.2815 6.6273 25 1 3.6709 -2.7811 5.6664 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5140 -0.8899 30 1 3.1262 1.4438 -0.0911 31 1 1.6042 1.9819 -0.8411 32 1 1.7529 1.9293 0.9319 33 1 1.5359 -0.6096 2.0339 34 1 5.0440 -1.3709 -1.2116 35 1 6.9040 0.1460 -1.7607 36 1 7.6286 1.8454 -0.1324 37 1 6.4866 2.0341 2.0407 38 1 3.9673 -1.4095 4.3299 39 1 7.7595 -3.4048 5.7493 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576479099.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:44:48 Heat of formation + Delta-G solvation = -84.113406 kcal Electronic energy + Delta-G solvation = -29086.183467 eV Core-core repulsion = 25056.668133 eV Total energy + Delta-G solvation = -4029.515334 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 3.19 seconds Orbital eigenvalues (eV) -38.76957 -37.08664 -36.69163 -35.74734 -35.51394 -34.66581 -34.60706 -31.69270 -31.09659 -30.86494 -30.15637 -27.04736 -24.30940 -23.13971 -22.80220 -21.24881 -19.50269 -18.76603 -18.36109 -17.96003 -17.24920 -16.63716 -16.21500 -15.56529 -15.20052 -14.86734 -14.72845 -14.25258 -14.13974 -13.96036 -13.93182 -13.27726 -13.21176 -13.04096 -12.76262 -12.45255 -12.25896 -12.08560 -11.82542 -11.71338 -11.59387 -11.38875 -11.34444 -11.18825 -11.05340 -10.93818 -10.88028 -10.77319 -10.54061 -10.37313 -10.22029 -10.08668 -9.81758 -9.20491 -8.95147 -8.90941 -8.47728 -6.69991 -3.93516 0.71002 0.97448 1.33883 1.51953 3.17890 3.23451 3.30327 3.30672 3.64326 4.00248 4.07776 4.26696 4.63867 4.77831 4.92696 4.98180 5.03352 5.10857 5.19696 5.25590 5.29187 5.50229 5.61732 5.71745 5.75998 5.91211 5.93983 5.96051 6.05785 6.15113 6.23144 6.39127 6.42155 6.48000 6.57312 6.96868 7.07048 7.37425 7.71635 8.19616 8.79377 8.91187 10.35854 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.012154 B = 0.006736 C = 0.005895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.236646 B = 4155.942072 C = 4748.281349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.146 3.854 3 C -0.174 4.174 4 N -1.075 6.075 5 S 2.674 3.326 6 O -0.972 6.972 7 O -0.949 6.949 8 C -0.589 4.589 9 C -0.048 4.048 10 C -0.115 4.115 11 C -0.089 4.089 12 C -0.055 4.055 13 C -0.547 4.547 14 S 2.494 3.506 15 O -1.008 7.008 16 O -0.970 6.970 17 N -0.906 5.906 18 C -0.216 4.216 19 H 0.123 0.877 20 C 0.048 3.952 21 N -0.831 5.831 22 Si 0.904 3.096 23 H -0.260 1.260 24 H -0.281 1.281 25 H -0.258 1.258 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.433 0.567 34 H 0.138 0.862 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.141 0.859 38 H 0.405 0.595 39 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.265 3.751 -10.604 13.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.038 3.962 3 C -0.233 4.233 4 N -0.841 5.841 5 S 2.763 3.237 6 O -0.962 6.962 7 O -0.939 6.939 8 C -0.676 4.676 9 C -0.068 4.068 10 C -0.134 4.134 11 C -0.108 4.108 12 C -0.075 4.075 13 C -0.623 4.623 14 S 2.589 3.411 15 O -0.995 6.995 16 O -0.959 6.959 17 N -0.656 5.656 18 C -0.368 4.368 19 H 0.140 0.860 20 C -0.166 4.166 21 N -0.472 5.472 22 Si 0.729 3.271 23 H -0.184 1.184 24 H -0.207 1.207 25 H -0.183 1.183 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.274 0.726 34 H 0.156 0.844 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.159 0.841 38 H 0.244 0.756 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.595 3.753 -10.597 13.567 hybrid contribution 0.217 -0.370 -0.330 0.541 sum -7.378 3.383 -10.928 13.612 Atomic orbital electron populations 1.22018 0.94233 1.02430 1.02479 1.20649 0.95441 0.93023 0.87087 1.22377 1.01539 0.96651 1.02740 1.55444 1.41963 1.67679 1.19029 1.02606 0.73302 0.73815 0.74023 1.93528 1.85969 1.62185 1.54519 1.93612 1.84581 1.79430 1.36243 1.30603 1.20040 1.14854 1.02120 1.20987 0.94302 0.97046 0.94457 1.21308 0.96962 0.95659 0.99505 1.21543 0.98113 0.97108 0.94063 1.21091 0.93123 0.97027 0.96277 1.32538 1.08592 0.98299 1.22880 1.13816 0.74749 0.78327 0.74220 1.93245 1.34054 1.87590 1.84656 1.93411 1.77241 1.54002 1.71289 1.53225 1.13910 1.48469 1.49990 1.19525 0.84383 1.02984 1.29957 0.85954 1.25502 0.96972 0.97053 0.97116 1.69766 1.17421 1.24653 1.35331 0.86178 0.81353 0.80996 0.78574 1.18427 1.20715 1.18300 0.91662 0.91722 0.92058 0.90151 0.92651 0.92353 0.90712 0.72555 0.84419 0.85460 0.85442 0.84127 0.75639 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.44 37.16 0.35 -1.25 16 2 C 0.15 1.93 3.50 -67.93 -0.24 1.69 16 3 C -0.17 -2.28 9.40 37.15 0.35 -1.93 16 4 N -1.07 -17.00 3.53 -4.89 -0.02 -17.02 16 5 S 2.67 49.63 4.87 -107.50 -0.52 49.11 16 6 O -0.97 -18.70 16.37 -57.17 -0.94 -19.63 16 7 O -0.95 -19.98 12.30 -64.17 -0.79 -20.77 16 8 C -0.59 -10.90 4.86 -39.58 -0.19 -11.09 16 9 C -0.05 -0.77 9.55 -39.58 -0.38 -1.15 16 10 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 11 C -0.09 -1.33 10.05 -39.58 -0.40 -1.72 16 12 C -0.06 -0.99 9.55 -39.58 -0.38 -1.37 16 13 C -0.55 -10.78 5.56 -39.58 -0.22 -11.00 16 14 S 2.49 54.03 4.86 -107.50 -0.52 53.51 16 15 O -1.01 -20.12 12.39 -64.17 -0.79 -20.92 16 16 O -0.97 -23.51 16.74 -57.17 -0.96 -24.47 16 17 N -0.91 -21.24 3.54 31.50 0.11 -21.13 16 18 C -0.22 -5.50 10.10 -15.06 -0.15 -5.66 16 19 H 0.12 3.22 8.05 -52.48 -0.42 2.80 16 20 C 0.05 1.23 5.50 -17.43 -0.10 1.13 16 21 N -0.83 -21.76 13.97 55.49 0.78 -20.99 16 22 Si 0.90 20.25 27.44 -169.99 -4.66 15.59 16 23 H -0.26 -5.88 7.11 56.52 0.40 -5.47 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.26 -5.52 6.45 56.52 0.36 -5.15 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 1.01 7.54 -51.93 -0.39 0.62 16 30 H 0.05 0.79 6.91 -51.93 -0.36 0.43 16 31 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 32 H 0.07 1.05 8.11 -51.93 -0.42 0.62 16 33 H 0.43 6.67 7.09 -34.47 -0.24 6.43 16 34 H 0.14 1.97 7.33 -52.49 -0.38 1.59 16 35 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 36 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 37 H 0.14 2.46 7.33 -52.49 -0.38 2.08 16 38 H 0.40 9.18 4.29 -34.47 -0.15 9.04 16 39 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 337.89 15.07 5.09 5.09 Total: -1.00 -30.06 337.89 -9.44 -39.50 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -4.47 Total: 16.52 kcal Atomic # 6 Polarization: -32.64 SS G_CDS: -1.75 Total: -34.39 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: 0.87 Total: -59.14 kcal Atomic # 8 Polarization: -82.31 SS G_CDS: -3.48 Total: -85.79 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.66 Total: 15.59 kcal Atomic # 16 Polarization: 103.66 SS G_CDS: -1.05 Total: 102.62 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.06 -9.44 -39.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576479099.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.609 kcal (2) G-P(sol) polarization free energy of solvation -30.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.19 seconds