Wall clock time and date at job start Wed Apr 1 2020 06:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47101 * 2 1 4 4 N 1.46503 * 109.46779 * 119.99961 * 2 1 3 5 5 S 1.65596 * 120.00064 * 144.40660 * 4 2 1 6 6 O 1.42101 * 106.39920 * 309.98015 * 5 4 2 7 7 O 1.42100 * 106.40409 * 177.06219 * 5 4 2 8 8 C 1.76201 * 107.21878 * 63.51922 * 5 4 2 9 9 C 1.38256 * 120.00159 * 247.43047 * 8 5 4 10 10 C 1.38215 * 120.00167 * 179.97438 * 9 8 5 11 11 C 1.38254 * 120.00117 * 0.02562 * 10 9 8 12 12 C 1.38220 * 119.99605 * 359.70563 * 11 10 9 13 13 C 1.38210 * 119.99879 * 67.41422 * 8 5 4 14 14 S 1.76199 * 120.00213 * 359.97438 * 13 8 5 15 15 O 1.42096 * 106.40376 * 314.22998 * 14 13 8 16 16 O 1.42100 * 106.40307 * 181.30111 * 14 13 8 17 17 N 1.65605 * 107.21178 * 67.76581 * 14 13 8 18 18 C 1.36935 * 120.00456 * 61.44120 * 17 14 13 19 19 H 1.08003 * 119.99591 * 4.87274 * 18 17 14 20 20 C 1.38807 * 120.00261 * 184.87986 * 18 17 14 21 21 N 1.31618 * 120.00029 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99965 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.46681 * 90.00621 * 22 20 18 24 24 H 1.48498 * 109.47448 * 210.00089 * 22 20 18 25 25 H 1.48495 * 109.47389 * 330.00824 * 22 20 18 26 26 H 1.09001 * 109.47091 * 300.00139 * 1 2 3 27 27 H 1.09000 * 109.47258 * 60.00510 * 1 2 3 28 28 H 1.09006 * 109.47283 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46846 * 239.99141 * 2 1 3 30 30 H 1.09001 * 109.47072 * 185.08391 * 3 2 1 31 31 H 1.09008 * 109.46790 * 305.08045 * 3 2 1 32 32 H 1.08992 * 109.47278 * 65.08085 * 3 2 1 33 33 H 0.97003 * 120.00035 * 324.39948 * 4 2 1 34 34 H 1.08001 * 119.99862 * 0.02562 * 9 8 5 35 35 H 1.08004 * 119.99827 * 179.97438 * 10 9 8 36 36 H 1.07989 * 120.00287 * 179.97438 * 11 10 9 37 37 H 1.07998 * 119.99955 * 180.29606 * 12 11 10 38 38 H 0.97002 * 119.99605 * 241.43307 * 17 14 13 39 39 H 0.96996 * 119.99948 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 16 3.3937 -1.6095 1.1184 6 8 3.2367 -2.4729 0.0007 7 8 3.6364 -2.0811 2.4367 8 6 4.7247 -0.5238 0.7253 9 6 5.3622 -0.6259 -0.4973 10 6 6.4059 0.2260 -0.8058 11 6 6.8128 1.1800 0.1084 12 6 6.1719 1.2857 1.3285 13 6 5.1313 0.4300 1.6391 14 16 4.3182 0.5609 3.1968 15 8 2.9240 0.5112 2.9272 16 8 4.9391 1.6386 3.8842 17 7 4.6779 -0.8096 4.0540 18 6 5.9783 -1.0959 4.3735 19 1 6.7606 -0.3902 4.1359 20 6 6.2911 -2.2931 5.0026 21 7 7.5409 -2.5680 5.3101 22 14 4.9378 -3.5134 5.4139 23 1 4.7510 -4.4477 4.2749 24 1 5.3160 -4.2815 6.6273 25 1 3.6709 -2.7811 5.6664 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5140 -0.8899 30 1 3.1262 1.4438 -0.0911 31 1 1.6042 1.9819 -0.8411 32 1 1.7529 1.9293 0.9319 33 1 1.5359 -0.6096 2.0339 34 1 5.0440 -1.3709 -1.2116 35 1 6.9040 0.1460 -1.7607 36 1 7.6286 1.8454 -0.1324 37 1 6.4866 2.0341 2.0407 38 1 3.9673 -1.4095 4.3299 39 1 7.7595 -3.4048 5.7493 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576479099.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:44:46 Heat of formation + Delta-G solvation = -107.716384 kcal Electronic energy + Delta-G solvation = -29087.206969 eV Core-core repulsion = 25056.668133 eV Total energy + Delta-G solvation = -4030.538836 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.16814 -38.71479 -38.19108 -37.39100 -37.08634 -36.68442 -36.38954 -33.39256 -32.51519 -32.29461 -31.32930 -27.95812 -26.13391 -24.61499 -24.24483 -22.32899 -21.11427 -20.45813 -20.07914 -19.59120 -18.75504 -18.36070 -17.67544 -17.19135 -16.72936 -16.46058 -16.11591 -15.79397 -15.60203 -15.40881 -15.20286 -14.97021 -14.62192 -14.40258 -14.23760 -13.74490 -13.59330 -13.42013 -13.27009 -13.15121 -13.03369 -13.01252 -12.94623 -12.92139 -12.77111 -12.42593 -12.26369 -12.19439 -12.08026 -11.97031 -11.88043 -11.77686 -11.51281 -10.56464 -10.35873 -10.27216 -10.23167 -8.37475 -5.88814 -0.77343 -0.51766 -0.34077 0.01016 1.37256 1.44977 1.50881 1.92107 2.23909 2.31408 2.34891 2.59964 2.87456 3.15192 3.26551 3.50286 3.83818 3.91853 3.96770 4.16233 4.23366 4.27245 4.34236 4.54417 4.58855 4.69570 4.83097 4.88211 4.92541 5.04302 5.05767 5.11469 5.17996 5.28455 5.45037 5.52833 5.73373 5.74532 6.36831 6.46442 7.06296 7.17485 8.76201 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.012154 B = 0.006736 C = 0.005895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.236646 B = 4155.942072 C = 4748.281349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.133 3.867 3 C -0.178 4.178 4 N -1.072 6.072 5 S 2.670 3.330 6 O -0.977 6.977 7 O -0.977 6.977 8 C -0.597 4.597 9 C -0.053 4.053 10 C -0.088 4.088 11 C -0.081 4.081 12 C -0.064 4.064 13 C -0.581 4.581 14 S 2.615 3.385 15 O -0.976 6.976 16 O -0.990 6.990 17 N -0.951 5.951 18 C -0.282 4.282 19 H 0.092 0.908 20 C 0.007 3.993 21 N -0.919 5.919 22 Si 0.934 3.066 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.247 1.247 26 H 0.065 0.935 27 H 0.091 0.909 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.043 0.957 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.434 0.566 34 H 0.161 0.839 35 H 0.180 0.820 36 H 0.174 0.826 37 H 0.142 0.858 38 H 0.409 0.591 39 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.435 6.388 -15.477 19.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.027 3.973 3 C -0.236 4.236 4 N -0.841 5.841 5 S 2.759 3.241 6 O -0.966 6.966 7 O -0.966 6.966 8 C -0.685 4.685 9 C -0.073 4.073 10 C -0.107 4.107 11 C -0.100 4.100 12 C -0.084 4.084 13 C -0.666 4.666 14 S 2.707 3.293 15 O -0.965 6.965 16 O -0.980 6.980 17 N -0.708 5.708 18 C -0.420 4.420 19 H 0.110 0.890 20 C -0.196 4.196 21 N -0.562 5.562 22 Si 0.758 3.242 23 H -0.194 1.194 24 H -0.203 1.203 25 H -0.171 1.171 26 H 0.084 0.916 27 H 0.109 0.891 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.276 0.724 34 H 0.178 0.822 35 H 0.198 0.802 36 H 0.191 0.809 37 H 0.159 0.841 38 H 0.249 0.751 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.649 6.238 -15.271 19.111 hybrid contribution 0.447 -0.528 0.383 0.791 sum -9.202 5.710 -14.888 18.410 Atomic orbital electron populations 1.22035 0.91999 1.03081 1.03854 1.21032 0.97327 0.92935 0.86050 1.22422 1.00982 0.96659 1.03577 1.55393 1.40628 1.67797 1.20254 1.02448 0.73883 0.74341 0.73415 1.93519 1.86179 1.62637 1.54314 1.93606 1.85196 1.80152 1.37640 1.30633 1.20674 1.13968 1.03239 1.21426 0.94463 0.97812 0.93617 1.21989 0.94774 0.92938 1.00987 1.22029 0.98289 0.97571 0.92108 1.21341 0.92413 0.96456 0.98201 1.31266 1.11348 1.02526 1.21442 1.05620 0.74131 0.75055 0.74534 1.93397 1.30811 1.87206 1.85078 1.93473 1.78356 1.53775 1.72405 1.51876 1.13540 1.45873 1.59533 1.18816 0.83437 1.03673 1.36035 0.88982 1.25701 0.98090 0.98285 0.97544 1.69826 1.18552 1.25759 1.42029 0.85735 0.80429 0.79909 0.78117 1.19360 1.20261 1.17102 0.91599 0.89066 0.91855 0.89208 0.93803 0.89208 0.91855 0.72386 0.82174 0.80242 0.80876 0.84056 0.75130 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.44 71.98 0.68 -1.87 16 2 C 0.13 2.99 3.50 44.99 0.16 3.14 16 3 C -0.18 -3.86 9.40 71.98 0.68 -3.18 16 4 N -1.07 -30.94 3.53 -169.39 -0.60 -31.54 16 5 S 2.67 94.18 4.87 -56.49 -0.28 93.91 16 6 O -0.98 -35.22 16.37 -128.00 -2.10 -37.31 16 7 O -0.98 -41.15 12.30 -121.31 -1.49 -42.64 16 8 C -0.60 -20.38 4.86 22.27 0.11 -20.27 16 9 C -0.05 -1.46 9.55 22.27 0.21 -1.25 16 10 C -0.09 -1.92 10.05 22.27 0.22 -1.69 16 11 C -0.08 -1.94 10.05 22.27 0.22 -1.72 16 12 C -0.06 -2.09 9.55 22.27 0.21 -1.88 16 13 C -0.58 -21.60 5.56 22.27 0.12 -21.47 16 14 S 2.61 110.75 4.86 -56.49 -0.27 110.47 16 15 O -0.98 -36.68 12.39 -121.31 -1.50 -38.18 16 16 O -0.99 -47.19 16.74 -128.00 -2.14 -49.33 16 17 N -0.95 -46.25 3.54 -54.27 -0.19 -46.44 16 18 C -0.28 -15.60 10.10 84.03 0.85 -14.75 16 19 H 0.09 5.38 8.05 -2.91 -0.02 5.36 16 20 C 0.01 0.42 5.50 84.86 0.47 0.89 16 21 N -0.92 -54.11 13.97 21.65 0.30 -53.81 16 22 Si 0.93 44.72 27.44 68.60 1.88 46.61 16 23 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 25 H -0.25 -10.96 6.45 99.48 0.64 -10.32 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.09 1.87 7.54 -2.39 -0.02 1.85 16 30 H 0.04 1.04 6.91 -2.39 -0.02 1.02 16 31 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.06 1.51 8.11 -2.39 -0.02 1.49 16 33 H 0.43 12.27 7.09 -96.74 -0.69 11.59 16 34 H 0.16 3.74 7.33 -2.91 -0.02 3.72 16 35 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 36 H 0.17 2.67 8.06 -2.92 -0.02 2.65 16 37 H 0.14 4.60 7.33 -2.91 -0.02 4.58 16 38 H 0.41 19.24 4.29 -96.74 -0.41 18.83 16 39 H 0.28 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -72.01 337.89 -2.51 -74.52 By element: Atomic # 1 Polarization: 37.87 SS G_CDS: -0.06 Total: 37.81 kcal Atomic # 6 Polarization: -67.99 SS G_CDS: 3.93 Total: -64.06 kcal Atomic # 7 Polarization: -131.30 SS G_CDS: -0.49 Total: -131.79 kcal Atomic # 8 Polarization: -160.23 SS G_CDS: -7.23 Total: -167.47 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.61 kcal Atomic # 16 Polarization: 204.93 SS G_CDS: -0.55 Total: 204.38 kcal Total: -72.01 -2.51 -74.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576479099.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.193 kcal (2) G-P(sol) polarization free energy of solvation -72.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds