Wall clock time and date at job start Wed Apr 1 2020 04:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 117.00336 * 2 1 4 4 C 1.38730 * 120.04566 * 0.02562 * 3 2 1 5 5 C 1.38234 * 119.93200 * 179.97438 * 4 3 2 6 6 Cl 1.73595 * 119.98828 * 179.97438 * 5 4 3 7 7 C 1.38411 * 120.02964 * 359.97438 * 5 4 3 8 8 C 1.38229 * 120.09660 * 359.97438 * 7 5 4 9 9 C 1.38173 * 120.06791 * 359.78459 * 8 7 5 10 10 S 1.76200 * 120.01788 * 180.25407 * 9 8 7 11 11 O 1.42096 * 106.40281 * 228.75709 * 10 9 8 12 12 O 1.42103 * 106.40031 * 1.67498 * 10 9 8 13 13 N 1.65600 * 107.21732 * 115.21448 * 10 9 8 14 14 C 1.46496 * 119.99928 * 65.00362 * 13 10 9 15 15 C 1.50701 * 109.47156 * 164.99772 * 14 13 10 16 16 O 1.21299 * 119.99899 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00320 * 179.97438 * 15 14 13 18 18 C 1.37095 * 120.00137 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99973 * 359.97438 * 18 17 15 20 20 C 1.38947 * 119.99916 * 180.02562 * 18 17 15 21 21 N 1.31409 * 120.00173 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99864 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47528 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47212 * 119.99595 * 22 20 18 25 25 H 1.48498 * 109.47009 * 239.99764 * 22 20 18 26 26 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46938 * 59.99705 * 1 2 3 28 28 H 1.09004 * 109.46926 * 299.99826 * 1 2 3 29 29 H 1.08003 * 120.03414 * 359.95231 * 4 3 2 30 30 H 1.07996 * 119.95680 * 179.97438 * 7 5 4 31 31 H 1.08002 * 119.96641 * 180.02562 * 8 7 5 32 32 H 0.97002 * 119.99459 * 244.99856 * 13 10 9 33 33 H 1.08995 * 109.47107 * 284.99644 * 14 13 10 34 34 H 1.08999 * 109.47281 * 44.99586 * 14 13 10 35 35 H 0.96998 * 119.99539 * 0.02562 * 17 15 14 36 36 H 0.97000 * 120.00387 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3750 0.0005 5 6 1.9216 3.6054 0.0011 6 17 0.9788 5.0630 0.0011 7 6 3.3039 3.6757 0.0016 8 6 4.0569 2.5165 0.0021 9 6 3.4313 1.2846 0.0066 10 16 4.3925 -0.1922 0.0141 11 8 3.8595 -1.0230 -1.0080 12 8 5.7533 0.2151 0.0538 13 7 4.0934 -0.9645 1.4481 14 6 2.7536 -1.4827 1.7354 15 6 2.8239 -2.4405 2.8968 16 8 3.8886 -2.6681 3.4316 17 7 1.7038 -3.0441 3.3413 18 6 1.7677 -3.9150 4.3982 19 1 2.7156 -4.1177 4.8743 20 6 0.6130 -4.5377 4.8560 21 7 -0.5403 -4.2915 4.2763 22 14 0.7002 -5.7248 6.2956 23 1 2.1045 -5.8291 6.7670 24 1 -0.1576 -5.2266 7.4008 25 1 0.2230 -7.0629 5.8633 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 0.2129 2.3200 0.0002 30 1 3.7949 4.6376 0.0016 31 1 5.1354 2.5739 0.0030 32 1 4.8054 -1.0737 2.0978 33 1 2.0901 -0.6553 1.9865 34 1 2.3695 -2.0031 0.8581 35 1 0.8525 -2.8623 2.9134 36 1 -1.3465 -4.7259 4.5962 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586775333.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:18 Heat of formation + Delta-G solvation = -122.574407 kcal Electronic energy + Delta-G solvation = -26345.023163 eV Core-core repulsion = 22175.963234 eV Total energy + Delta-G solvation = -4169.059929 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 16.50 seconds Orbital eigenvalues (eV) -40.68337 -38.45997 -38.14918 -37.06583 -36.74954 -35.71813 -34.62401 -33.68169 -31.61135 -31.35195 -30.70273 -27.65814 -27.12128 -24.32836 -23.68204 -22.83341 -19.67717 -19.59836 -18.89330 -18.15109 -17.78237 -17.14394 -16.81864 -16.37712 -15.79526 -15.72401 -15.44898 -14.88134 -14.69294 -14.54006 -14.33613 -14.18407 -13.81972 -13.60213 -13.18909 -12.49836 -12.41193 -12.35991 -12.24606 -12.02836 -11.95061 -11.86595 -11.82583 -11.53081 -11.44870 -11.28765 -11.15808 -10.92262 -10.40751 -10.31504 -9.64911 -9.59410 -9.33384 -8.87389 -8.55499 -8.09216 -6.52175 -3.93090 0.21485 0.55960 0.85970 1.52992 2.75484 2.84385 3.10225 3.20202 3.22920 3.30046 3.73825 3.79190 4.09297 4.15659 4.40542 4.53052 4.75507 4.85542 4.95036 4.95730 5.04852 5.13648 5.16493 5.31566 5.43144 5.54750 5.60060 5.66804 5.84688 5.95654 6.09550 6.30097 6.71905 7.31141 7.46676 7.94411 8.46971 9.06110 9.40131 9.89352 10.65160 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.013332 B = 0.003235 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.761824 B = 8654.591673 C = 9908.890581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.300 6.300 3 C 0.239 3.761 4 C -0.221 4.221 5 C 0.054 3.946 6 Cl -0.056 7.056 7 C -0.172 4.172 8 C 0.029 3.971 9 C -0.708 4.708 10 S 2.709 3.291 11 O -0.945 6.945 12 O -0.963 6.963 13 N -1.094 6.094 14 C 0.115 3.885 15 C 0.435 3.565 16 O -0.589 6.589 17 N -0.554 5.554 18 C -0.302 4.302 19 H 0.106 0.894 20 C 0.025 3.975 21 N -0.898 5.898 22 Si 0.931 3.069 23 H -0.267 1.267 24 H -0.281 1.281 25 H -0.281 1.281 26 H 0.118 0.882 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.150 0.850 30 H 0.145 0.855 31 H 0.160 0.840 32 H 0.427 0.573 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.394 0.606 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.547 16.765 -10.365 19.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.211 6.211 3 C 0.190 3.810 4 C -0.241 4.241 5 C 0.026 3.974 6 Cl -0.027 7.027 7 C -0.192 4.192 8 C 0.010 3.990 9 C -0.794 4.794 10 S 2.795 3.205 11 O -0.935 6.935 12 O -0.953 6.953 13 N -0.858 5.858 14 C -0.016 4.016 15 C 0.219 3.781 16 O -0.474 6.474 17 N -0.190 5.190 18 C -0.431 4.431 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.539 5.539 22 Si 0.758 3.242 23 H -0.191 1.191 24 H -0.207 1.207 25 H -0.207 1.207 26 H 0.137 0.863 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.167 0.833 30 H 0.162 0.838 31 H 0.178 0.822 32 H 0.266 0.734 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.228 0.772 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.325 16.203 -10.738 19.441 hybrid contribution -1.345 0.397 1.034 1.742 sum -1.020 16.600 -9.704 19.255 Atomic orbital electron populations 1.23375 0.76190 1.06053 1.02044 1.86307 1.23492 1.24988 1.86331 1.18188 0.90297 0.84944 0.87585 1.21174 1.01295 0.90481 1.11184 1.20957 0.92207 0.87525 0.96669 1.98404 1.72587 1.35437 1.96258 1.21086 0.91464 0.99960 1.06655 1.20820 1.00929 0.89205 0.88058 1.30503 1.04318 1.20842 1.23715 1.01521 0.72815 0.73178 0.73003 1.93602 1.80264 1.64655 1.54951 1.93569 1.31882 1.83336 1.86557 1.55047 1.19431 1.72094 1.39264 1.21007 0.82898 0.97848 0.99803 1.19759 0.85385 0.85844 0.87086 1.90509 1.29124 1.67008 1.60795 1.41797 1.08154 1.38908 1.30125 1.19788 0.96122 1.19136 1.08075 0.87660 1.25276 0.94641 0.98573 0.99219 1.69603 0.98831 1.43781 1.41686 0.85779 0.78684 0.79488 0.80282 1.19146 1.20704 1.20652 0.86330 0.91831 0.91457 0.83283 0.83768 0.82245 0.73394 0.90514 0.88284 0.77243 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.30 -3.60 5.56 -29.18 -0.16 -3.76 16 3 C 0.24 2.87 6.31 -39.22 -0.25 2.62 16 4 C -0.22 -2.24 8.82 -39.40 -0.35 -2.58 16 5 C 0.05 0.52 6.32 -39.52 -0.25 0.27 16 6 Cl -0.06 -0.48 28.95 -51.86 -1.50 -1.98 16 7 C -0.17 -1.60 9.83 -39.52 -0.39 -1.99 16 8 C 0.03 0.31 9.54 -39.61 -0.38 -0.07 16 9 C -0.71 -8.95 5.90 -39.43 -0.23 -9.19 16 10 S 2.71 40.50 5.46 -107.50 -0.59 39.92 16 11 O -0.94 -16.48 16.77 -62.50 -1.05 -17.53 16 12 O -0.96 -15.49 16.97 -57.17 -0.97 -16.46 16 13 N -1.09 -17.75 5.93 -11.66 -0.07 -17.82 16 14 C 0.11 1.97 4.98 -5.20 -0.03 1.94 16 15 C 0.43 9.82 7.85 -10.98 -0.09 9.73 16 16 O -0.59 -15.22 15.31 5.54 0.08 -15.14 16 17 N -0.55 -13.29 5.29 -10.96 -0.06 -13.35 16 18 C -0.30 -8.06 9.68 -14.94 -0.14 -8.20 16 19 H 0.11 2.97 7.16 -52.49 -0.38 2.59 16 20 C 0.03 0.64 5.50 -17.47 -0.10 0.55 16 21 N -0.90 -23.13 13.05 55.50 0.72 -22.40 16 22 Si 0.93 20.27 29.55 -169.99 -5.02 15.24 16 23 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 28 H 0.07 0.48 7.66 -51.93 -0.40 0.08 16 29 H 0.15 1.17 6.30 -52.48 -0.33 0.84 16 30 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.16 1.42 7.33 -52.49 -0.38 1.03 16 32 H 0.43 7.13 7.70 -34.47 -0.27 6.86 16 33 H 0.08 1.13 6.65 -51.93 -0.35 0.79 16 34 H 0.10 1.61 7.13 -51.93 -0.37 1.24 16 35 H 0.39 8.81 7.90 -40.82 -0.32 8.49 16 36 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 LS Contribution 338.71 15.07 5.10 5.10 Total: -1.00 -33.54 338.71 -7.88 -41.42 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -3.17 Total: 12.54 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -1.20 Total: -5.78 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: 0.60 Total: -53.57 kcal Atomic # 8 Polarization: -50.80 SS G_CDS: -2.10 Total: -52.89 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 40.50 SS G_CDS: -0.59 Total: 39.92 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.50 Total: -1.98 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.54 -7.88 -41.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586775333.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.157 kcal (2) G-P(sol) polarization free energy of solvation -33.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 16.50 seconds