Wall clock time and date at job start Wed Apr 1 2020 04:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 117.00336 * 2 1 4 4 C 1.38730 * 120.04566 * 0.02562 * 3 2 1 5 5 C 1.38234 * 119.93200 * 179.97438 * 4 3 2 6 6 Cl 1.73595 * 119.98828 * 179.97438 * 5 4 3 7 7 C 1.38411 * 120.02964 * 359.97438 * 5 4 3 8 8 C 1.38229 * 120.09660 * 359.97438 * 7 5 4 9 9 C 1.38173 * 120.06791 * 359.78459 * 8 7 5 10 10 S 1.76200 * 120.01788 * 180.25407 * 9 8 7 11 11 O 1.42096 * 106.40281 * 228.75709 * 10 9 8 12 12 O 1.42103 * 106.40031 * 1.67498 * 10 9 8 13 13 N 1.65600 * 107.21732 * 115.21448 * 10 9 8 14 14 C 1.46496 * 119.99928 * 65.00362 * 13 10 9 15 15 C 1.50701 * 109.47156 * 164.99772 * 14 13 10 16 16 O 1.21299 * 119.99899 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00320 * 179.97438 * 15 14 13 18 18 C 1.37095 * 120.00137 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99973 * 359.97438 * 18 17 15 20 20 C 1.38947 * 119.99916 * 180.02562 * 18 17 15 21 21 N 1.31409 * 120.00173 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99864 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47528 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47212 * 119.99595 * 22 20 18 25 25 H 1.48498 * 109.47009 * 239.99764 * 22 20 18 26 26 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46938 * 59.99705 * 1 2 3 28 28 H 1.09004 * 109.46926 * 299.99826 * 1 2 3 29 29 H 1.08003 * 120.03414 * 359.95231 * 4 3 2 30 30 H 1.07996 * 119.95680 * 179.97438 * 7 5 4 31 31 H 1.08002 * 119.96641 * 180.02562 * 8 7 5 32 32 H 0.97002 * 119.99459 * 244.99856 * 13 10 9 33 33 H 1.08995 * 109.47107 * 284.99644 * 14 13 10 34 34 H 1.08999 * 109.47281 * 44.99586 * 14 13 10 35 35 H 0.96998 * 119.99539 * 0.02562 * 17 15 14 36 36 H 0.97000 * 120.00387 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3750 0.0005 5 6 1.9216 3.6054 0.0011 6 17 0.9788 5.0630 0.0011 7 6 3.3039 3.6757 0.0016 8 6 4.0569 2.5165 0.0021 9 6 3.4313 1.2846 0.0066 10 16 4.3925 -0.1922 0.0141 11 8 3.8595 -1.0230 -1.0080 12 8 5.7533 0.2151 0.0538 13 7 4.0934 -0.9645 1.4481 14 6 2.7536 -1.4827 1.7354 15 6 2.8239 -2.4405 2.8968 16 8 3.8886 -2.6681 3.4316 17 7 1.7038 -3.0441 3.3413 18 6 1.7677 -3.9150 4.3982 19 1 2.7156 -4.1177 4.8743 20 6 0.6130 -4.5377 4.8560 21 7 -0.5403 -4.2915 4.2763 22 14 0.7002 -5.7248 6.2956 23 1 2.1045 -5.8291 6.7670 24 1 -0.1576 -5.2266 7.4008 25 1 0.2230 -7.0629 5.8633 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 0.2129 2.3200 0.0002 30 1 3.7949 4.6376 0.0016 31 1 5.1354 2.5739 0.0030 32 1 4.8054 -1.0737 2.0978 33 1 2.0901 -0.6553 1.9865 34 1 2.3695 -2.0031 0.8581 35 1 0.8525 -2.8623 2.9134 36 1 -1.3465 -4.7259 4.5962 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586775333.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:02 Heat of formation + Delta-G solvation = -148.455547 kcal Electronic energy + Delta-G solvation = -26346.145453 eV Core-core repulsion = 22175.963234 eV Total energy + Delta-G solvation = -4170.182220 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 8.05 seconds Orbital eigenvalues (eV) -41.48776 -40.23817 -38.99353 -38.24862 -37.51593 -36.98433 -36.31264 -35.35292 -33.30380 -32.42199 -31.47529 -28.75049 -28.32687 -26.14792 -24.54015 -23.60022 -21.41055 -20.69524 -20.04810 -19.87498 -18.97288 -18.24048 -17.72976 -17.40769 -17.23806 -16.87796 -16.56687 -16.29923 -16.04594 -15.89638 -15.61597 -15.28744 -15.11327 -14.56171 -14.16267 -13.94393 -13.84250 -13.58341 -13.28846 -13.18250 -13.13044 -13.07282 -13.03977 -12.90714 -12.73356 -12.40404 -12.14058 -12.10674 -12.02047 -11.89821 -11.54540 -10.69863 -10.42442 -10.35357 -10.03748 -9.64655 -8.47852 -5.96226 -0.75533 -0.48370 0.08396 0.79866 1.36962 1.44899 1.57782 1.83618 1.96697 2.00672 2.20479 2.31989 2.63547 3.08796 3.19760 3.27952 3.59767 3.82967 3.89582 4.06863 4.23006 4.25058 4.39649 4.43830 4.44626 4.48998 4.59359 4.76437 4.81261 4.85067 4.94082 5.34631 5.42539 5.90808 5.96028 6.02725 6.55200 7.09507 7.49920 8.03384 8.69136 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.013332 B = 0.003235 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.761824 B = 8654.591673 C = 9908.890581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.321 6.321 3 C 0.227 3.773 4 C -0.220 4.220 5 C 0.051 3.949 6 Cl -0.042 7.042 7 C -0.167 4.167 8 C 0.023 3.977 9 C -0.720 4.720 10 S 2.724 3.276 11 O -0.975 6.975 12 O -0.979 6.979 13 N -1.101 6.101 14 C 0.128 3.872 15 C 0.432 3.568 16 O -0.626 6.626 17 N -0.560 5.560 18 C -0.336 4.336 19 H 0.081 0.919 20 C -0.006 4.006 21 N -0.912 5.912 22 Si 0.991 3.009 23 H -0.275 1.275 24 H -0.270 1.270 25 H -0.272 1.272 26 H 0.123 0.877 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.171 0.829 30 H 0.172 0.828 31 H 0.173 0.827 32 H 0.424 0.576 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.401 0.599 36 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.846 18.317 -10.511 21.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.234 6.234 3 C 0.178 3.822 4 C -0.240 4.240 5 C 0.023 3.977 6 Cl -0.013 7.013 7 C -0.186 4.186 8 C 0.004 3.996 9 C -0.809 4.809 10 S 2.814 3.186 11 O -0.965 6.965 12 O -0.969 6.969 13 N -0.864 5.864 14 C -0.002 4.002 15 C 0.218 3.782 16 O -0.513 6.513 17 N -0.196 5.196 18 C -0.466 4.466 19 H 0.099 0.901 20 C -0.207 4.207 21 N -0.552 5.552 22 Si 0.815 3.185 23 H -0.199 1.199 24 H -0.195 1.195 25 H -0.197 1.197 26 H 0.141 0.859 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.188 0.812 30 H 0.189 0.811 31 H 0.190 0.810 32 H 0.262 0.738 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.236 0.764 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.984 17.731 -10.903 20.838 hybrid contribution -0.989 0.043 1.030 1.429 sum -1.973 17.774 -9.873 20.427 Atomic orbital electron populations 1.23673 0.74553 1.06956 1.03673 1.86260 1.25325 1.25368 1.86400 1.18318 0.90182 0.85624 0.88070 1.21391 1.02348 0.89910 1.10382 1.21146 0.92662 0.88001 0.95849 1.98414 1.72255 1.34514 1.96088 1.21385 0.91414 1.00593 1.05240 1.21058 1.01797 0.88914 0.87846 1.30081 1.04541 1.19909 1.26377 1.00755 0.72491 0.73367 0.71965 1.93559 1.80678 1.66412 1.55807 1.93539 1.33191 1.83638 1.86549 1.55093 1.18929 1.72959 1.39394 1.20938 0.84075 0.97511 0.97634 1.20643 0.84358 0.85576 0.87603 1.90481 1.30396 1.68184 1.62276 1.41811 1.08905 1.38976 1.29947 1.19722 0.95757 1.21292 1.09815 0.90128 1.25981 0.94066 0.99469 1.01173 1.69646 0.99179 1.44061 1.42346 0.84903 0.78270 0.77769 0.77599 1.19929 1.19515 1.19729 0.85923 0.89898 0.90157 0.81159 0.81100 0.81010 0.73803 0.87641 0.87231 0.76448 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.07 9.81 113.37 1.11 1.18 16 2 O -0.32 -7.29 5.56 -83.10 -0.46 -7.75 16 3 C 0.23 5.09 6.31 22.50 0.14 5.24 16 4 C -0.22 -3.90 8.82 22.39 0.20 -3.71 16 5 C 0.05 0.85 6.32 22.31 0.14 0.99 16 6 Cl -0.04 -0.60 28.95 -2.72 -0.08 -0.68 16 7 C -0.17 -2.66 9.83 22.31 0.22 -2.44 16 8 C 0.02 0.45 9.54 22.25 0.21 0.66 16 9 C -0.72 -17.41 5.90 22.37 0.13 -17.27 16 10 S 2.72 81.39 5.46 -56.49 -0.31 81.09 16 11 O -0.97 -34.24 16.77 -122.91 -2.06 -36.30 16 12 O -0.98 -31.54 16.97 -128.00 -2.17 -33.71 16 13 N -1.10 -36.00 5.93 -190.80 -1.13 -37.13 16 14 C 0.13 4.39 4.98 85.63 0.43 4.81 16 15 C 0.43 19.83 7.85 87.66 0.69 20.51 16 16 O -0.63 -33.29 15.31 -3.09 -0.05 -33.34 16 17 N -0.56 -27.24 5.29 -306.98 -1.62 -28.87 16 18 C -0.34 -18.30 9.68 84.04 0.81 -17.49 16 19 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 20 C -0.01 -0.31 5.50 84.93 0.47 0.16 16 21 N -0.91 -46.30 13.05 21.66 0.28 -46.02 16 22 Si 0.99 41.23 29.55 68.60 2.03 43.26 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 24 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 25 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 26 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.08 0.88 7.66 -2.39 -0.02 0.86 16 28 H 0.08 0.95 7.66 -2.38 -0.02 0.94 16 29 H 0.17 2.15 6.30 -2.91 -0.02 2.13 16 30 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 31 H 0.17 2.80 7.33 -2.91 -0.02 2.78 16 32 H 0.42 14.51 7.70 -96.75 -0.75 13.77 16 33 H 0.11 3.01 6.65 -2.39 -0.02 2.99 16 34 H 0.11 3.55 7.13 -2.39 -0.02 3.53 16 35 H 0.40 18.01 7.90 -92.71 -0.73 17.28 16 36 H 0.28 13.23 8.31 -92.71 -0.77 12.46 16 Total: -1.00 -71.88 338.71 -1.32 -73.20 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: -0.30 Total: 33.61 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 4.55 Total: -7.35 kcal Atomic # 7 Polarization: -109.54 SS G_CDS: -2.47 Total: -112.02 kcal Atomic # 8 Polarization: -106.37 SS G_CDS: -4.74 Total: -111.11 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Atomic # 16 Polarization: 81.39 SS G_CDS: -0.31 Total: 81.09 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.68 kcal Total: -71.88 -1.32 -73.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586775333.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.257 kcal (2) G-P(sol) polarization free energy of solvation -71.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.05 seconds