Wall clock time and date at job start Wed Apr 1 2020 06:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46503 * 119.99455 * 2 1 4 4 C 1.50699 * 109.47096 * 275.27670 * 3 2 1 5 5 H 1.07999 * 120.00278 * 5.03479 * 4 3 2 6 6 C 1.37878 * 119.99989 * 185.03266 * 4 3 2 7 7 N 1.31514 * 120.00155 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 120.00000 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47197 * 59.99926 * 8 6 4 10 10 H 1.48505 * 109.46836 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47022 * 299.99776 * 8 6 4 12 12 S 1.65589 * 120.00348 * 179.97438 * 2 1 3 13 13 O 1.42101 * 106.40373 * 332.13215 * 12 2 1 14 14 O 1.42107 * 106.40517 * 199.21018 * 12 2 1 15 15 N 1.65604 * 107.21988 * 85.67164 * 12 2 1 16 16 C 1.46502 * 119.99666 * 293.70891 * 15 12 2 17 17 H 1.08999 * 109.47197 * 350.35980 * 16 15 12 18 18 C 1.53002 * 109.46783 * 230.36514 * 16 15 12 19 19 C 1.50704 * 109.46948 * 61.49039 * 18 16 15 20 20 O 1.20823 * 120.00245 * 353.48429 * 19 18 16 21 21 O 1.34236 * 119.99554 * 173.48739 * 19 18 16 22 22 C 1.50701 * 109.47052 * 110.36787 * 16 15 12 23 23 C 1.33390 * 125.19749 * 219.99578 * 22 16 15 24 24 C 1.38422 * 114.91246 * 180.25041 * 23 22 16 25 25 C 1.33385 * 114.92573 * 359.49408 * 24 23 22 26 26 S 1.75884 * 109.59361 * 0.47627 * 25 24 23 27 27 H 1.08998 * 109.46997 * 269.99948 * 1 2 3 28 28 H 1.09000 * 109.47340 * 29.99903 * 1 2 3 29 29 H 1.09005 * 109.46610 * 150.00086 * 1 2 3 30 30 H 1.09003 * 109.47497 * 35.28334 * 3 2 1 31 31 H 1.09004 * 109.47046 * 155.28199 * 3 2 1 32 32 H 0.96997 * 120.00515 * 179.97438 * 7 6 4 33 33 H 0.96996 * 119.99921 * 113.70292 * 15 12 2 34 34 H 1.09000 * 109.46839 * 181.48614 * 18 16 15 35 35 H 1.08994 * 109.47081 * 301.49214 * 18 16 15 36 36 H 0.96701 * 116.99214 * 174.98901 * 21 19 18 37 37 H 1.07996 * 122.54309 * 359.97438 * 23 22 16 38 38 H 1.08004 * 122.53464 * 179.72720 * 24 23 22 39 39 H 1.08004 * 125.20534 * 180.21417 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3354 1.7692 -1.4148 5 1 1.8502 1.2429 -2.2235 6 6 3.0810 2.8990 -1.6768 7 7 3.6723 3.5396 -0.6922 8 14 3.2514 3.5196 -3.4305 9 1 1.9078 3.8425 -3.9741 10 1 4.0977 4.7399 -3.4436 11 1 3.8850 2.4695 -4.2679 12 16 2.2931 -1.4340 0.0006 13 8 1.4501 -2.3838 0.6383 14 8 3.6086 -1.1376 0.4491 15 7 2.4348 -1.9190 -1.5764 16 6 1.2408 -2.2964 -2.3368 17 1 0.3864 -2.3612 -1.6631 18 6 1.4689 -3.6547 -3.0032 19 6 1.7042 -4.7006 -1.9440 20 8 1.8082 -4.3744 -0.7853 21 8 1.7983 -5.9947 -2.2880 22 6 0.9693 -1.2575 -3.3941 23 6 -0.2381 -0.8037 -3.7341 24 6 -0.2415 0.1486 -4.7387 25 6 0.9638 0.4759 -5.2071 26 16 2.1961 -0.4574 -4.3681 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8901 -0.5139 30 1 1.6526 2.0029 0.5936 31 1 3.1876 1.1168 0.4297 32 1 4.1972 4.3342 -0.8765 33 1 3.3084 -1.9530 -1.9967 34 1 0.5907 -3.9234 -3.5903 35 1 2.3393 -3.5972 -3.6567 36 1 2.0235 -6.6203 -1.5857 37 1 -1.1445 -1.1560 -3.2645 38 1 -1.1510 0.5957 -5.1121 39 1 1.1536 1.2000 -5.9857 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603555877.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:54:00 Heat of formation + Delta-G solvation = -122.693802 kcal Electronic energy + Delta-G solvation = -28288.778693 eV Core-core repulsion = 24257.590387 eV Total energy + Delta-G solvation = -4031.188306 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.28499 -38.05616 -36.52572 -36.20908 -35.44849 -35.25580 -34.97390 -32.39562 -30.65965 -29.07640 -27.70475 -25.01833 -24.89933 -22.75375 -22.18872 -21.02972 -19.65745 -18.53005 -18.10471 -17.49054 -17.06753 -16.57925 -16.26186 -16.17342 -15.99854 -15.31820 -15.15272 -14.81513 -14.23702 -13.68555 -13.34362 -13.31421 -13.15328 -12.75278 -12.58733 -12.46982 -12.21332 -12.17132 -12.12160 -11.66213 -11.47541 -11.41601 -11.20896 -11.15894 -11.09183 -11.03518 -10.70062 -10.48695 -10.46413 -10.38680 -10.04844 -9.68729 -9.41110 -8.50624 -8.41829 -8.11061 -7.88698 -6.02964 -4.07209 1.16953 1.44423 1.88584 2.26140 2.28844 2.85818 3.06176 3.26475 3.31388 3.33106 3.61641 4.33078 4.42239 4.53972 4.75298 4.87303 5.05494 5.26077 5.29733 5.33371 5.42784 5.45789 5.62397 5.65927 5.73106 5.98054 6.12534 6.26417 6.35492 6.46215 6.52497 6.65030 6.67656 7.18851 7.44055 7.54566 7.75500 7.93504 7.95996 8.25775 8.99294 9.58005 11.05754 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.011499 B = 0.006216 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.390910 B = 4503.228922 C = 5915.511219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.996 5.996 3 C 0.244 3.756 4 C -0.532 4.532 5 H 0.072 0.928 6 C 0.066 3.934 7 N -0.893 5.893 8 Si 0.879 3.121 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.270 1.270 12 S 2.788 3.212 13 O -0.974 6.974 14 O -0.981 6.981 15 N -1.115 6.115 16 C 0.246 3.754 17 H 0.111 0.889 18 C -0.117 4.117 19 C 0.463 3.537 20 O -0.473 6.473 21 O -0.525 6.525 22 C -0.197 4.197 23 C -0.125 4.125 24 C -0.135 4.135 25 C -0.215 4.215 26 S 0.148 5.852 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.047 0.953 30 H 0.032 0.968 31 H 0.053 0.947 32 H 0.263 0.737 33 H 0.411 0.589 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.408 0.592 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.473 -13.328 -9.451 17.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.838 5.838 3 C 0.122 3.878 4 C -0.571 4.571 5 H 0.090 0.910 6 C -0.136 4.136 7 N -0.532 5.532 8 Si 0.707 3.293 9 H -0.202 1.202 10 H -0.215 1.215 11 H -0.196 1.196 12 S 2.795 3.205 13 O -0.957 6.957 14 O -0.965 6.965 15 N -0.870 5.870 16 C 0.135 3.865 17 H 0.129 0.871 18 C -0.157 4.157 19 C 0.303 3.697 20 O -0.357 6.357 21 O -0.338 6.338 22 C -0.317 4.317 23 C -0.157 4.157 24 C -0.166 4.166 25 C -0.351 4.351 26 S 0.414 5.586 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.243 0.757 34 H 0.135 0.865 35 H 0.131 0.869 36 H 0.267 0.733 37 H 0.155 0.845 38 H 0.153 0.847 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.691 -13.304 -8.587 16.826 hybrid contribution -1.020 0.702 -1.109 1.663 sum -6.711 -12.602 -9.697 17.259 Atomic orbital electron populations 1.21204 0.80557 1.01657 1.00411 1.57688 1.13937 1.23629 1.88592 1.19212 0.92195 0.78792 0.97632 1.21669 1.31202 1.10707 0.93533 0.91003 1.24890 0.95436 0.96688 0.96595 1.69924 1.32985 1.19103 1.31147 0.86845 0.78145 0.78480 0.85879 1.20168 1.21471 1.19579 1.01817 0.73284 0.72455 0.72898 1.93592 1.68963 1.60415 1.72778 1.93581 1.38637 1.85047 1.79260 1.56236 1.13282 1.83617 1.33839 1.18688 0.89393 0.88050 0.90333 0.87148 1.21755 1.06334 0.90872 0.96698 1.23379 0.73959 0.82325 0.90080 1.90976 1.43406 1.81187 1.20156 1.84501 1.83282 1.19121 1.46932 1.24749 0.97067 1.05335 1.04536 1.19961 0.97240 0.99070 0.99426 1.20002 0.97939 0.99858 0.98823 1.25629 0.96351 1.06692 1.06443 1.84346 1.09587 1.34649 1.30053 0.93844 0.90929 0.93482 0.94952 0.92923 0.92758 0.75657 0.86548 0.86944 0.73304 0.84515 0.84669 0.82483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.88 10.31 59.85 0.62 2.50 16 2 N -1.00 -20.93 3.23 -123.04 -0.40 -21.33 16 3 C 0.24 6.15 5.40 -5.19 -0.03 6.12 16 4 C -0.53 -13.72 9.38 -34.44 -0.32 -14.05 16 5 H 0.07 1.73 6.70 -52.49 -0.35 1.37 16 6 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 7 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 8 Si 0.88 20.60 29.54 -169.99 -5.02 15.57 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 12 S 2.79 57.85 5.82 -107.50 -0.63 57.23 16 13 O -0.97 -20.93 14.29 -66.34 -0.95 -21.88 16 14 O -0.98 -24.18 16.61 -57.17 -0.95 -25.13 16 15 N -1.11 -18.37 4.16 -5.88 -0.02 -18.40 16 16 C 0.25 3.27 2.38 -69.08 -0.16 3.11 16 17 H 0.11 1.49 6.02 -51.93 -0.31 1.18 16 18 C -0.12 -1.17 5.50 -27.88 -0.15 -1.33 16 19 C 0.46 5.54 8.20 36.01 0.30 5.83 16 20 O -0.47 -7.74 13.26 -26.16 -0.35 -8.09 16 21 O -0.53 -4.79 13.42 -39.27 -0.53 -5.32 16 22 C -0.20 -2.66 5.45 -36.00 -0.20 -2.86 16 23 C -0.13 -1.55 10.04 -41.21 -0.41 -1.97 16 24 C -0.14 -1.72 10.18 -41.21 -0.42 -2.14 16 25 C -0.21 -3.00 11.23 29.04 0.33 -2.67 16 26 S 0.15 2.21 22.00 -107.50 -2.37 -0.16 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 29 H 0.05 0.70 6.42 -51.93 -0.33 0.36 16 30 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16 31 H 0.05 1.49 6.87 -51.93 -0.36 1.13 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.41 6.29 8.96 -34.47 -0.31 5.98 16 34 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.41 2.27 9.10 45.56 0.41 2.69 16 37 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.14 1.42 8.06 -52.48 -0.42 1.00 16 39 H 0.16 1.97 8.06 -52.48 -0.42 1.54 16 LS Contribution 357.62 15.07 5.39 5.39 Total: -1.00 -35.97 357.62 -9.40 -45.36 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -3.76 Total: 7.64 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -0.56 Total: -5.75 kcal Atomic # 7 Polarization: -65.19 SS G_CDS: 0.32 Total: -64.88 kcal Atomic # 8 Polarization: -57.64 SS G_CDS: -2.77 Total: -60.41 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 60.06 SS G_CDS: -2.99 Total: 57.07 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.97 -9.40 -45.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603555877.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.330 kcal (2) G-P(sol) polarization free energy of solvation -35.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds