Wall clock time and date at job start Wed Apr 1 2020 06:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46503 * 119.99455 * 2 1 4 4 C 1.50699 * 109.47096 * 275.27670 * 3 2 1 5 5 H 1.07999 * 120.00278 * 5.03479 * 4 3 2 6 6 C 1.37878 * 119.99989 * 185.03266 * 4 3 2 7 7 N 1.31514 * 120.00155 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 120.00000 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47197 * 59.99926 * 8 6 4 10 10 H 1.48505 * 109.46836 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47022 * 299.99776 * 8 6 4 12 12 S 1.65589 * 120.00348 * 179.97438 * 2 1 3 13 13 O 1.42101 * 106.40373 * 332.13215 * 12 2 1 14 14 O 1.42107 * 106.40517 * 199.21018 * 12 2 1 15 15 N 1.65604 * 107.21988 * 85.67164 * 12 2 1 16 16 C 1.46502 * 119.99666 * 293.70891 * 15 12 2 17 17 H 1.08999 * 109.47197 * 350.35980 * 16 15 12 18 18 C 1.53002 * 109.46783 * 230.36514 * 16 15 12 19 19 C 1.50704 * 109.46948 * 61.49039 * 18 16 15 20 20 O 1.20823 * 120.00245 * 353.48429 * 19 18 16 21 21 O 1.34236 * 119.99554 * 173.48739 * 19 18 16 22 22 C 1.50701 * 109.47052 * 110.36787 * 16 15 12 23 23 C 1.33390 * 125.19749 * 219.99578 * 22 16 15 24 24 C 1.38422 * 114.91246 * 180.25041 * 23 22 16 25 25 C 1.33385 * 114.92573 * 359.49408 * 24 23 22 26 26 S 1.75884 * 109.59361 * 0.47627 * 25 24 23 27 27 H 1.08998 * 109.46997 * 269.99948 * 1 2 3 28 28 H 1.09000 * 109.47340 * 29.99903 * 1 2 3 29 29 H 1.09005 * 109.46610 * 150.00086 * 1 2 3 30 30 H 1.09003 * 109.47497 * 35.28334 * 3 2 1 31 31 H 1.09004 * 109.47046 * 155.28199 * 3 2 1 32 32 H 0.96997 * 120.00515 * 179.97438 * 7 6 4 33 33 H 0.96996 * 119.99921 * 113.70292 * 15 12 2 34 34 H 1.09000 * 109.46839 * 181.48614 * 18 16 15 35 35 H 1.08994 * 109.47081 * 301.49214 * 18 16 15 36 36 H 0.96701 * 116.99214 * 174.98901 * 21 19 18 37 37 H 1.07996 * 122.54309 * 359.97438 * 23 22 16 38 38 H 1.08004 * 122.53464 * 179.72720 * 24 23 22 39 39 H 1.08004 * 125.20534 * 180.21417 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3354 1.7692 -1.4148 5 1 1.8502 1.2429 -2.2235 6 6 3.0810 2.8990 -1.6768 7 7 3.6723 3.5396 -0.6922 8 14 3.2514 3.5196 -3.4305 9 1 1.9078 3.8425 -3.9741 10 1 4.0977 4.7399 -3.4436 11 1 3.8850 2.4695 -4.2679 12 16 2.2931 -1.4340 0.0006 13 8 1.4501 -2.3838 0.6383 14 8 3.6086 -1.1376 0.4491 15 7 2.4348 -1.9190 -1.5764 16 6 1.2408 -2.2964 -2.3368 17 1 0.3864 -2.3612 -1.6631 18 6 1.4689 -3.6547 -3.0032 19 6 1.7042 -4.7006 -1.9440 20 8 1.8082 -4.3744 -0.7853 21 8 1.7983 -5.9947 -2.2880 22 6 0.9693 -1.2575 -3.3941 23 6 -0.2381 -0.8037 -3.7341 24 6 -0.2415 0.1486 -4.7387 25 6 0.9638 0.4759 -5.2071 26 16 2.1961 -0.4574 -4.3681 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8901 -0.5139 30 1 1.6526 2.0029 0.5936 31 1 3.1876 1.1168 0.4297 32 1 4.1972 4.3342 -0.8765 33 1 3.3084 -1.9530 -1.9967 34 1 0.5907 -3.9234 -3.5903 35 1 2.3393 -3.5972 -3.6567 36 1 2.0235 -6.6203 -1.5857 37 1 -1.1445 -1.1560 -3.2645 38 1 -1.1510 0.5957 -5.1121 39 1 1.1536 1.2000 -5.9857 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603555877.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:53:59 Heat of formation + Delta-G solvation = -150.192846 kcal Electronic energy + Delta-G solvation = -28289.971141 eV Core-core repulsion = 24257.590387 eV Total energy + Delta-G solvation = -4032.380754 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.21586 -39.06152 -38.14632 -37.24236 -37.12697 -36.71292 -36.39322 -34.39767 -31.78582 -30.02625 -29.57802 -26.71380 -25.92072 -24.13119 -23.70555 -21.94940 -20.87384 -19.83742 -19.06065 -18.82180 -18.42402 -18.39667 -17.98639 -17.12061 -17.09838 -16.83308 -16.34348 -16.16159 -15.75981 -15.03978 -14.91384 -14.67712 -14.24250 -13.97858 -13.93721 -13.73689 -13.56380 -13.38730 -13.32592 -13.08126 -13.00988 -12.94403 -12.81983 -12.61753 -12.56090 -12.39711 -12.33597 -12.27839 -11.87314 -11.63166 -11.46510 -11.44094 -10.71769 -10.49070 -9.71879 -9.49891 -9.14283 -8.09604 -6.20082 -0.19426 0.18903 0.84053 1.25813 1.38175 1.41231 1.44065 1.49883 1.91852 2.11692 2.26437 2.46843 2.74614 3.23226 3.50883 3.68777 3.79222 3.91411 4.12375 4.33099 4.33643 4.59694 4.66805 4.72553 4.74638 4.79927 4.84274 4.97951 5.10240 5.32143 5.33095 5.48065 5.54280 5.72552 5.77505 5.83265 5.91157 6.13181 6.20276 6.94919 7.13708 7.49484 8.99362 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.011499 B = 0.006216 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.390910 B = 4503.228922 C = 5915.511219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -1.001 6.001 3 C 0.257 3.743 4 C -0.525 4.525 5 H 0.091 0.909 6 C 0.012 3.988 7 N -0.936 5.936 8 Si 0.934 3.066 9 H -0.261 1.261 10 H -0.297 1.297 11 H -0.254 1.254 12 S 2.802 3.198 13 O -0.981 6.981 14 O -1.028 7.028 15 N -1.107 6.107 16 C 0.241 3.759 17 H 0.112 0.888 18 C -0.111 4.111 19 C 0.469 3.531 20 O -0.524 6.524 21 O -0.515 6.515 22 C -0.197 4.197 23 C -0.120 4.120 24 C -0.133 4.133 25 C -0.226 4.226 26 S 0.092 5.908 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.016 0.984 31 H 0.014 0.986 32 H 0.260 0.740 33 H 0.416 0.584 34 H 0.152 0.848 35 H 0.129 0.871 36 H 0.424 0.576 37 H 0.166 0.834 38 H 0.161 0.839 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.708 -14.560 -11.986 21.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.843 5.843 3 C 0.133 3.867 4 C -0.564 4.564 5 H 0.109 0.891 6 C -0.186 4.186 7 N -0.577 5.577 8 Si 0.759 3.241 9 H -0.185 1.185 10 H -0.223 1.223 11 H -0.179 1.179 12 S 2.810 3.190 13 O -0.964 6.964 14 O -1.013 7.013 15 N -0.866 5.866 16 C 0.131 3.869 17 H 0.130 0.870 18 C -0.150 4.150 19 C 0.311 3.689 20 O -0.413 6.413 21 O -0.329 6.329 22 C -0.317 4.317 23 C -0.152 4.152 24 C -0.163 4.163 25 C -0.362 4.362 26 S 0.357 5.643 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.034 0.966 31 H 0.032 0.968 32 H 0.069 0.931 33 H 0.250 0.750 34 H 0.170 0.830 35 H 0.147 0.853 36 H 0.285 0.715 37 H 0.183 0.817 38 H 0.179 0.821 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.963 -14.591 -11.147 20.013 hybrid contribution -0.417 0.956 -0.331 1.094 sum -8.379 -13.635 -11.478 19.694 Atomic orbital electron populations 1.21457 0.78235 1.03213 1.01613 1.57553 1.15484 1.22040 1.89174 1.18772 0.90592 0.80124 0.97203 1.22010 1.30217 1.10168 0.94038 0.89060 1.25712 0.95391 0.97203 1.00340 1.70081 1.34389 1.19780 1.33456 0.85947 0.78741 0.77890 0.81530 1.18529 1.22332 1.17869 1.01159 0.72055 0.72131 0.73679 1.93579 1.68859 1.60238 1.73742 1.93513 1.41192 1.85670 1.80924 1.55858 1.14839 1.83152 1.32750 1.18949 0.87944 0.89799 0.90187 0.87030 1.21788 1.08725 0.88361 0.96174 1.23689 0.72438 0.83192 0.89569 1.90971 1.46022 1.82025 1.22259 1.84463 1.82568 1.18404 1.47502 1.24695 0.96833 1.05625 1.04526 1.20338 0.97825 0.98160 0.98885 1.20371 0.98450 0.99292 0.98233 1.25862 0.96219 1.07143 1.06991 1.84539 1.11613 1.36440 1.31731 0.92978 0.90628 0.90563 0.96603 0.96828 0.93071 0.75033 0.82982 0.85287 0.71457 0.81654 0.82149 0.81451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.30 10.31 127.77 1.32 4.62 16 2 N -1.00 -41.93 3.23 -543.20 -1.75 -43.68 16 3 C 0.26 13.28 5.40 85.63 0.46 13.74 16 4 C -0.52 -27.06 9.38 25.60 0.24 -26.82 16 5 H 0.09 4.26 6.70 -2.91 -0.02 4.24 16 6 C 0.01 0.64 5.46 84.65 0.46 1.11 16 7 N -0.94 -55.67 13.29 21.45 0.28 -55.39 16 8 Si 0.93 41.78 29.54 68.60 2.03 43.80 16 9 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 10 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 11 H -0.25 -10.63 7.11 99.48 0.71 -9.92 16 12 S 2.80 116.72 5.82 -56.49 -0.33 116.39 16 13 O -0.98 -41.72 14.29 -119.23 -1.70 -43.42 16 14 O -1.03 -52.54 16.61 -128.00 -2.13 -54.66 16 15 N -1.11 -35.45 4.16 -172.51 -0.72 -36.17 16 16 C 0.24 5.78 2.38 44.25 0.11 5.89 16 17 H 0.11 2.67 6.02 -2.39 -0.01 2.65 16 18 C -0.11 -1.87 5.50 29.85 0.16 -1.71 16 19 C 0.47 10.11 8.20 71.24 0.58 10.70 16 20 O -0.52 -16.55 13.26 29.06 0.39 -16.16 16 21 O -0.52 -7.96 13.42 -51.48 -0.69 -8.65 16 22 C -0.20 -4.72 5.45 24.59 0.13 -4.59 16 23 C -0.12 -2.49 10.04 21.22 0.21 -2.28 16 24 C -0.13 -2.84 10.18 21.21 0.22 -2.62 16 25 C -0.23 -5.63 11.23 66.72 0.75 -4.88 16 26 S 0.09 2.55 22.00 -56.49 -1.24 1.30 16 27 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.07 2.44 8.07 -2.39 -0.02 2.42 16 29 H 0.08 2.04 6.42 -2.38 -0.02 2.03 16 30 H 0.02 0.86 8.11 -2.39 -0.02 0.84 16 31 H 0.01 0.81 6.87 -2.38 -0.02 0.80 16 32 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 33 H 0.42 12.59 8.96 -96.75 -0.87 11.72 16 34 H 0.15 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.42 3.74 9.10 -74.06 -0.67 3.07 16 37 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 38 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 39 H 0.17 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -79.51 357.62 -1.64 -81.15 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: -0.42 Total: 22.33 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: 4.65 Total: -6.85 kcal Atomic # 7 Polarization: -133.05 SS G_CDS: -2.19 Total: -135.24 kcal Atomic # 8 Polarization: -118.76 SS G_CDS: -4.14 Total: -122.89 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal Atomic # 16 Polarization: 119.26 SS G_CDS: -1.57 Total: 117.69 kcal Total: -79.51 -1.64 -81.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603555877.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.041 kcal (2) G-P(sol) polarization free energy of solvation -79.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds