Wall clock time and date at job start Wed Apr 1 2020 06:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47319 * 60.00570 * 8 6 4 10 10 H 1.48503 * 109.46734 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47266 * 300.00384 * 8 6 4 12 12 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 13 13 C 1.46498 * 119.99673 * 60.00290 * 12 2 1 14 14 S 1.65593 * 119.99939 * 239.99810 * 12 2 1 15 15 O 1.42101 * 106.40455 * 203.53915 * 14 12 2 16 16 O 1.42093 * 106.40554 * 336.46252 * 14 12 2 17 17 C 1.76201 * 107.21631 * 90.00236 * 14 12 2 18 18 C 1.38237 * 120.00131 * 269.72594 * 17 14 12 19 19 C 1.38233 * 120.00117 * 179.74730 * 18 17 14 20 20 C 1.38238 * 119.99510 * 0.52488 * 19 18 17 21 21 S 1.76210 * 119.99485 * 179.76890 * 20 19 18 22 22 N 1.65596 * 107.21715 * 269.97968 * 21 20 19 23 23 O 1.42099 * 106.40017 * 23.52060 * 21 20 19 24 24 O 1.42104 * 106.39921 * 156.43659 * 21 20 19 25 25 C 1.38226 * 120.00520 * 359.74919 * 20 19 18 26 26 C 1.38233 * 119.99972 * 359.97438 * 25 20 19 27 27 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 30 30 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 31 31 H 1.08992 * 109.47421 * 89.99857 * 13 12 2 32 32 H 1.09007 * 109.46720 * 209.99867 * 13 12 2 33 33 H 1.09003 * 109.47218 * 329.99648 * 13 12 2 34 34 H 1.08003 * 119.99600 * 359.97438 * 18 17 14 35 35 H 1.08000 * 120.00335 * 180.29206 * 19 18 17 36 36 H 0.97000 * 119.99600 * 150.00439 * 22 21 20 37 37 H 0.96995 * 120.00427 * 329.99612 * 22 21 20 38 38 H 1.07998 * 120.00334 * 179.97438 * 25 20 19 39 39 H 1.08003 * 120.00195 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.8256 -2.5201 -4.0078 10 1 1.8266 -0.4198 -5.2204 11 1 3.8062 -1.1209 -4.0082 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4279 14 16 2.9704 0.1141 2.2862 15 8 3.7119 -0.8789 2.9814 16 8 3.5794 1.1829 1.5748 17 6 1.8961 0.8534 3.4710 18 6 1.4157 2.1332 3.2649 19 6 0.5687 2.7112 4.1919 20 6 0.2107 2.0135 5.3304 21 16 -0.8641 2.7527 6.5150 22 7 0.0875 3.5574 7.6055 23 8 -1.6053 3.7457 5.8196 24 8 -1.4733 1.6837 7.2260 25 6 0.6956 0.7360 5.5393 26 6 1.5380 0.1558 4.6096 27 1 -0.3635 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 0.7092 1.1618 -3.4843 31 1 2.4157 -2.7377 0.9716 32 1 1.6238 -2.2853 2.5002 33 1 0.6904 -2.3002 0.9846 34 1 1.6993 2.6800 2.3777 35 1 0.1896 3.7092 4.0286 36 1 -0.2502 4.3494 8.0521 37 1 0.9825 3.2366 7.7977 38 1 0.4162 0.1912 6.4290 39 1 1.9172 -0.8421 4.7730 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609146223.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:46:10 Heat of formation + Delta-G solvation = -141.240742 kcal Electronic energy + Delta-G solvation = -26879.006501 eV Core-core repulsion = 22847.013939 eV Total energy + Delta-G solvation = -4031.992562 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.38930 -38.45495 -38.34744 -37.96509 -37.02704 -36.99336 -34.55920 -34.11190 -32.86709 -32.35832 -30.95736 -27.32186 -27.05408 -25.12260 -24.19981 -22.59146 -20.70372 -20.17293 -19.56296 -18.87493 -18.61179 -18.39853 -18.11170 -17.54927 -17.15729 -16.79367 -16.31927 -15.98539 -15.84660 -15.29008 -15.03324 -14.78118 -14.70830 -14.60165 -14.39352 -13.75871 -13.44814 -13.31978 -13.28926 -13.25442 -13.20340 -13.16706 -13.01294 -12.80204 -12.66419 -12.61799 -12.59242 -12.29808 -12.19498 -11.98683 -11.76823 -11.37502 -11.20468 -11.06571 -10.50777 -10.30534 -9.72871 -8.12415 -6.26074 -1.05955 -0.67170 -0.63646 0.01686 1.44272 1.45925 1.52798 1.73026 2.05607 2.22523 2.43908 2.62106 2.71086 3.12659 3.16379 3.25944 3.68904 3.72507 4.03168 4.06011 4.20950 4.33997 4.57872 4.65096 4.69946 4.70464 4.79917 4.85343 4.94355 4.99219 5.08888 5.16662 5.24374 5.50776 5.59348 5.67311 5.83459 6.08176 6.27100 6.32339 6.80681 7.42909 8.91687 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.019205 B = 0.003148 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.604537 B = 8891.132665 C = 9519.656768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.270 3.730 3 H 0.032 0.968 4 C -0.539 4.539 5 H 0.059 0.941 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.955 3.045 9 H -0.267 1.267 10 H -0.283 1.283 11 H -0.278 1.278 12 N -0.986 5.986 13 C 0.096 3.904 14 S 2.686 3.314 15 O -0.975 6.975 16 O -0.986 6.986 17 C -0.628 4.628 18 C -0.057 4.057 19 C -0.041 4.041 20 C -0.632 4.632 21 S 2.735 3.265 22 N -1.228 6.228 23 O -0.986 6.986 24 O -0.980 6.980 25 C -0.041 4.041 26 C -0.049 4.049 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.030 0.970 30 H 0.265 0.735 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.144 0.856 35 H 0.170 0.830 36 H 0.433 0.567 37 H 0.431 0.569 38 H 0.183 0.817 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.188 2.780 20.994 21.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.166 3.834 3 H 0.050 0.950 4 C -0.579 4.579 5 H 0.078 0.922 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.781 3.219 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.204 1.204 12 N -0.826 5.826 13 C -0.049 4.049 14 S 2.779 3.221 15 O -0.965 6.965 16 O -0.977 6.977 17 C -0.715 4.715 18 C -0.077 4.077 19 C -0.060 4.060 20 C -0.717 4.717 21 S 2.820 3.180 22 N -0.909 5.909 23 O -0.976 6.976 24 O -0.969 6.969 25 C -0.060 4.060 26 C -0.069 4.069 27 H 0.088 0.912 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.162 0.838 35 H 0.187 0.813 36 H 0.267 0.733 37 H 0.261 0.739 38 H 0.200 0.800 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -2.396 2.779 20.717 21.039 hybrid contribution 0.670 -0.029 -1.174 1.352 sum -1.725 2.749 19.543 19.811 Atomic orbital electron populations 1.21966 0.97065 1.00426 1.00464 1.18506 0.92100 0.91782 0.80981 0.94994 1.21594 1.31892 1.13213 0.91208 0.92230 1.25622 0.95151 0.95689 1.01612 1.69957 1.37118 1.23592 1.24497 0.85656 0.78512 0.79010 0.78732 1.19169 1.20807 1.20356 1.57300 1.70361 1.20932 1.34016 1.21487 1.02134 0.79803 1.01468 1.01899 0.74296 0.73009 0.72913 1.93507 1.68882 1.59266 1.74882 1.93539 1.74657 1.57093 1.72386 1.31447 1.18485 1.06549 1.15031 1.21266 0.93880 0.92997 0.99541 1.21311 0.92795 1.00681 0.91245 1.31283 1.18550 1.06716 1.15194 1.00607 0.72053 0.72656 0.72636 1.52672 1.31910 1.45547 1.60771 1.93585 1.69644 1.59886 1.74478 1.93605 1.73547 1.57572 1.72156 1.21484 0.92097 0.92588 0.99847 1.21406 0.94128 1.00446 0.90917 0.91165 0.93615 0.95092 0.92572 0.93139 0.89569 0.90239 0.83831 0.81273 0.73318 0.73876 0.79975 0.81396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.20 8.95 71.98 0.64 -5.55 16 2 C 0.27 12.94 2.62 44.24 0.12 13.05 16 3 H 0.03 1.72 6.91 -2.39 -0.02 1.70 16 4 C -0.54 -28.55 8.37 25.60 0.21 -28.34 16 5 H 0.06 3.11 7.65 -2.91 -0.02 3.09 16 6 C 0.02 1.04 5.30 84.65 0.45 1.49 16 7 N -0.91 -50.39 11.32 21.45 0.24 -50.15 16 8 Si 0.96 42.55 29.54 68.60 2.03 44.58 16 9 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 12 N -0.99 -39.05 3.06 -520.44 -1.59 -40.64 16 13 C 0.10 3.12 9.53 127.77 1.22 4.33 16 14 S 2.69 99.90 5.64 -56.49 -0.32 99.58 16 15 O -0.98 -36.30 16.36 -128.00 -2.09 -38.40 16 16 O -0.99 -44.27 15.84 -128.00 -2.03 -46.29 16 17 C -0.63 -18.57 5.97 22.27 0.13 -18.44 16 18 C -0.06 -1.62 9.52 22.27 0.21 -1.41 16 19 C -0.04 -0.92 9.52 22.27 0.21 -0.71 16 20 C -0.63 -12.09 5.97 22.27 0.13 -11.95 16 21 S 2.74 42.94 6.28 -56.49 -0.35 42.59 16 22 N -1.23 -8.06 9.52 37.02 0.35 -7.71 16 23 O -0.99 -22.19 17.28 -128.00 -2.21 -24.41 16 24 O -0.98 -20.63 17.28 -128.00 -2.21 -22.84 16 25 C -0.04 -0.75 9.52 22.27 0.21 -0.54 16 26 C -0.05 -1.13 9.52 22.27 0.21 -0.92 16 27 H 0.07 3.50 6.07 -2.39 -0.01 3.49 16 28 H 0.04 1.89 6.66 -2.39 -0.02 1.87 16 29 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 31 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.09 2.14 7.79 -2.38 -0.02 2.13 16 33 H 0.08 2.50 6.43 -2.39 -0.02 2.49 16 34 H 0.14 4.28 7.61 -2.91 -0.02 4.26 16 35 H 0.17 3.09 7.62 -2.91 -0.02 3.06 16 36 H 0.43 1.35 8.96 -96.75 -0.87 0.48 16 37 H 0.43 0.90 8.96 -96.75 -0.87 0.03 16 38 H 0.18 2.16 7.62 -2.91 -0.02 2.13 16 39 H 0.17 3.15 7.62 -2.91 -0.02 3.13 16 Total: -1.00 -77.74 352.75 -5.05 -82.79 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -0.61 Total: 9.88 kcal Atomic # 6 Polarization: -52.74 SS G_CDS: 3.76 Total: -48.98 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -1.00 Total: -98.50 kcal Atomic # 8 Polarization: -123.40 SS G_CDS: -8.55 Total: -131.94 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 16 Polarization: 142.84 SS G_CDS: -0.67 Total: 142.17 kcal Total: -77.74 -5.05 -82.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609146223.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.447 kcal (2) G-P(sol) polarization free energy of solvation -77.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds