Wall clock time and date at job start Wed Apr 1 2020 05:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99391 * 2 1 4 4 H 1.48506 * 109.46785 * 239.99953 * 3 2 1 5 5 H 1.48500 * 109.47508 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46882 * 120.00172 * 3 2 1 7 7 C 1.37869 * 120.00283 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99867 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00059 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46966 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47122 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.47437 * 179.97438 * 11 10 9 13 13 S 1.65599 * 120.00418 * 164.99857 * 12 11 10 14 14 O 1.42100 * 106.40241 * 311.46108 * 13 12 11 15 15 O 1.42096 * 106.40379 * 178.53729 * 13 12 11 16 16 C 1.76199 * 107.21658 * 65.00023 * 13 12 11 17 17 C 1.38238 * 120.00251 * 269.72679 * 16 13 12 18 18 C 1.38228 * 120.00121 * 179.76592 * 17 16 13 19 19 C 1.38234 * 120.00032 * 0.48826 * 18 17 16 20 20 S 1.76209 * 120.00036 * 179.76965 * 19 18 17 21 21 N 1.65600 * 107.21338 * 270.02080 * 20 19 18 22 22 O 1.42100 * 106.40042 * 23.56004 * 20 19 18 23 23 O 1.42097 * 106.39943 * 156.47856 * 20 19 18 24 24 C 1.38230 * 119.99845 * 359.78460 * 19 18 17 25 25 C 1.38234 * 120.00019 * 90.00010 * 16 13 12 26 26 H 0.96996 * 120.00426 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47298 * 60.00789 * 9 7 2 28 28 H 1.08996 * 109.47407 * 300.00199 * 9 7 2 29 29 H 1.08998 * 109.47681 * 60.00115 * 10 9 7 30 30 H 1.09005 * 109.47006 * 300.00032 * 10 9 7 31 31 H 1.09005 * 109.47495 * 60.00060 * 11 10 9 32 32 H 1.08996 * 109.47189 * 299.99557 * 11 10 9 33 33 H 0.97001 * 119.99713 * 345.00063 * 12 11 10 34 34 H 1.08004 * 119.99572 * 0.02562 * 17 16 13 35 35 H 1.08004 * 120.00400 * 180.25458 * 18 17 16 36 36 H 0.96997 * 120.00265 * 0.02562 * 21 20 19 37 37 H 0.97006 * 119.99267 * 179.97438 * 21 20 19 38 38 H 1.08005 * 119.99901 * 179.97438 * 24 19 18 39 39 H 1.07999 * 120.00005 * 0.02562 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0847 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6619 -0.0005 11 6 1.4806 -4.9870 -0.0012 12 7 2.4327 -6.1005 -0.0018 13 16 1.9180 -7.6303 0.3686 14 8 1.1551 -7.5189 1.5623 15 8 3.0536 -8.4759 0.2481 16 6 0.7944 -8.1230 -0.8960 17 6 -0.5565 -7.8630 -0.7601 18 6 -1.4374 -8.2452 -1.7544 19 6 -0.9688 -8.8965 -2.8800 20 16 -2.0925 -9.3892 -4.1447 21 7 -2.6072 -10.9189 -3.7743 22 8 -3.2280 -8.5435 -4.0243 23 8 -1.3294 -9.5005 -5.3383 24 6 0.3813 -9.1616 -3.0133 25 6 1.2629 -8.7746 -2.0214 26 1 -0.4850 0.8400 -0.0004 27 1 0.6243 -2.5568 -0.8903 28 1 0.6249 -2.5571 0.8896 29 1 2.8722 -3.6042 0.8894 30 1 2.8722 -3.6041 -0.8906 31 1 0.8543 -5.0446 -0.8914 32 1 0.8538 -5.0451 0.8886 33 1 3.3646 -5.9416 -0.2192 34 1 -0.9231 -7.3574 0.1211 35 1 -2.4923 -8.0384 -1.6501 36 1 -2.2784 -11.3614 -2.9762 37 1 -3.2382 -11.3722 -4.3551 38 1 0.7474 -9.6708 -3.8926 39 1 2.3177 -8.9821 -2.1254 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609146685.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:43 Heat of formation + Delta-G solvation = -131.498822 kcal Electronic energy + Delta-G solvation = -25558.591412 eV Core-core repulsion = 21527.021292 eV Total energy + Delta-G solvation = -4031.570120 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.71101 -37.59614 -37.45575 -36.27383 -36.12712 -36.03946 -33.70922 -33.30782 -32.18300 -31.67346 -30.94599 -26.47721 -24.43920 -23.56259 -23.06093 -20.70420 -20.11862 -19.63043 -19.03367 -18.14655 -17.85823 -17.39034 -16.76757 -16.48104 -16.37339 -15.84691 -15.30018 -15.28695 -14.74953 -14.59530 -14.45471 -14.11045 -13.95993 -13.75073 -12.71843 -12.61685 -12.52484 -12.42840 -12.39466 -12.33307 -12.24386 -12.11927 -11.91901 -11.84420 -11.64745 -11.08717 -11.01220 -10.93230 -10.82698 -10.61132 -10.39386 -10.00018 -9.62054 -9.53150 -9.39247 -9.16920 -8.40231 -6.05331 -4.08429 -0.37480 -0.03249 0.21757 0.70691 2.42489 2.68794 2.94172 3.20305 3.30563 3.35476 3.37464 3.52471 3.86500 4.03416 4.32077 4.41571 4.47947 4.70481 4.91374 5.01699 5.18902 5.27114 5.30736 5.34803 5.39602 5.46499 5.50098 5.54238 5.78818 5.97385 6.18061 6.48008 6.48536 6.66484 6.85636 7.01373 7.57672 7.69772 7.92677 8.34040 8.97758 9.56150 11.05893 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.011364 B = 0.002639 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.353758 B =10606.293625 C =12351.163860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.115 4.115 11 C 0.109 3.891 12 N -1.109 6.109 13 S 2.691 3.309 14 O -0.948 6.948 15 O -0.959 6.959 16 C -0.622 4.622 17 C -0.039 4.039 18 C -0.038 4.038 19 C -0.631 4.631 20 S 2.701 3.299 21 N -1.249 6.249 22 O -0.954 6.954 23 O -0.957 6.957 24 C -0.041 4.041 25 C -0.041 4.041 26 H 0.262 0.738 27 H 0.019 0.981 28 H 0.020 0.980 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.420 0.580 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.418 0.582 37 H 0.422 0.578 38 H 0.153 0.847 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.835 -25.207 -5.615 25.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.155 4.155 11 C -0.016 4.016 12 N -0.871 5.871 13 S 2.777 3.223 14 O -0.938 6.938 15 O -0.949 6.949 16 C -0.707 4.707 17 C -0.059 4.059 18 C -0.058 4.058 19 C -0.718 4.718 20 S 2.789 3.211 21 N -0.925 5.925 22 O -0.943 6.943 23 O -0.946 6.946 24 C -0.061 4.061 25 C -0.061 4.061 26 H 0.072 0.928 27 H 0.037 0.963 28 H 0.039 0.961 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.256 0.744 34 H 0.174 0.826 35 H 0.173 0.827 36 H 0.245 0.755 37 H 0.253 0.747 38 H 0.170 0.830 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.160 -24.923 -5.654 25.751 hybrid contribution 0.678 0.701 -0.077 0.978 sum -2.481 -24.222 -5.730 25.014 Atomic orbital electron populations 1.69942 1.06051 1.26878 1.50446 1.25018 0.94865 0.99306 0.95196 0.86637 0.79566 0.83047 0.78617 1.20256 1.21265 1.20216 1.21157 0.93012 0.90911 1.51135 0.92650 1.19074 0.93909 0.90991 0.97647 1.21857 0.99676 0.92532 1.01406 1.21691 0.91341 0.86812 1.01743 1.55469 1.19660 1.23812 1.88174 1.02138 0.73431 0.72716 0.73975 1.93619 1.72485 1.85968 1.41681 1.93594 1.48922 1.65577 1.86817 1.31664 1.11550 1.10175 1.17284 1.21219 0.91221 0.94568 0.98891 1.21173 1.01307 0.92458 0.90819 1.30977 1.10934 1.13201 1.16680 1.01719 0.73640 0.72727 0.73038 1.53022 1.63009 1.37182 1.39263 1.93642 1.49453 1.65454 1.85749 1.93626 1.71819 1.85783 1.43380 1.21120 0.91167 0.95383 0.98463 1.21105 1.01028 0.92931 0.91002 0.92831 0.96289 0.96142 0.92226 0.92491 0.92018 0.90239 0.74446 0.82643 0.82747 0.75543 0.74724 0.82959 0.82988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 8 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.12 -2.12 5.29 -26.73 -0.14 -2.26 16 11 C 0.11 1.61 6.22 -4.04 -0.03 1.59 16 12 N -1.11 -13.35 6.00 -10.61 -0.06 -13.42 16 13 S 2.69 32.20 5.74 -107.50 -0.62 31.58 16 14 O -0.95 -13.90 16.75 -57.17 -0.96 -14.86 16 15 O -0.96 -12.86 17.28 -57.17 -0.99 -13.84 16 16 C -0.62 -6.62 5.95 -39.58 -0.24 -6.86 16 17 C -0.04 -0.40 9.52 -39.58 -0.38 -0.78 16 18 C -0.04 -0.34 9.52 -39.59 -0.38 -0.72 16 19 C -0.63 -5.44 5.94 -39.59 -0.24 -5.68 16 20 S 2.70 21.28 6.28 -107.50 -0.68 20.60 16 21 N -1.25 -4.54 9.55 60.35 0.58 -3.97 16 22 O -0.95 -10.78 17.28 -57.17 -0.99 -11.77 16 23 O -0.96 -10.40 17.28 -57.17 -0.99 -11.39 16 24 C -0.04 -0.35 9.52 -39.59 -0.38 -0.73 16 25 C -0.04 -0.38 9.52 -39.58 -0.38 -0.76 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 1.18 7.75 -51.93 -0.40 0.78 16 33 H 0.42 4.33 8.65 -34.47 -0.30 4.03 16 34 H 0.16 1.41 7.61 -52.48 -0.40 1.01 16 35 H 0.15 1.12 7.62 -52.48 -0.40 0.72 16 36 H 0.42 0.59 8.92 -34.47 -0.31 0.29 16 37 H 0.42 0.87 8.96 -34.46 -0.31 0.56 16 38 H 0.15 0.95 7.62 -52.48 -0.40 0.55 16 39 H 0.15 1.14 7.62 -52.49 -0.40 0.74 16 LS Contribution 362.86 15.07 5.47 5.47 Total: -1.00 -39.00 362.86 -10.78 -49.79 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -4.57 Total: 0.01 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: -2.69 Total: -28.90 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 1.25 Total: -42.92 kcal Atomic # 8 Polarization: -47.94 SS G_CDS: -3.92 Total: -51.86 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 53.48 SS G_CDS: -1.29 Total: 52.18 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -39.00 -10.78 -49.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609146685.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.711 kcal (2) G-P(sol) polarization free energy of solvation -39.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds