Wall clock time and date at job start Wed Apr 1 2020 05:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99391 * 2 1 4 4 H 1.48506 * 109.46785 * 239.99953 * 3 2 1 5 5 H 1.48500 * 109.47508 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46882 * 120.00172 * 3 2 1 7 7 C 1.37869 * 120.00283 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99867 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00059 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46966 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47122 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.47437 * 179.97438 * 11 10 9 13 13 S 1.65599 * 120.00418 * 164.99857 * 12 11 10 14 14 O 1.42100 * 106.40241 * 311.46108 * 13 12 11 15 15 O 1.42096 * 106.40379 * 178.53729 * 13 12 11 16 16 C 1.76199 * 107.21658 * 65.00023 * 13 12 11 17 17 C 1.38238 * 120.00251 * 269.72679 * 16 13 12 18 18 C 1.38228 * 120.00121 * 179.76592 * 17 16 13 19 19 C 1.38234 * 120.00032 * 0.48826 * 18 17 16 20 20 S 1.76209 * 120.00036 * 179.76965 * 19 18 17 21 21 N 1.65600 * 107.21338 * 270.02080 * 20 19 18 22 22 O 1.42100 * 106.40042 * 23.56004 * 20 19 18 23 23 O 1.42097 * 106.39943 * 156.47856 * 20 19 18 24 24 C 1.38230 * 119.99845 * 359.78460 * 19 18 17 25 25 C 1.38234 * 120.00019 * 90.00010 * 16 13 12 26 26 H 0.96996 * 120.00426 * 0.02562 * 1 2 3 27 27 H 1.08995 * 109.47298 * 60.00789 * 9 7 2 28 28 H 1.08996 * 109.47407 * 300.00199 * 9 7 2 29 29 H 1.08998 * 109.47681 * 60.00115 * 10 9 7 30 30 H 1.09005 * 109.47006 * 300.00032 * 10 9 7 31 31 H 1.09005 * 109.47495 * 60.00060 * 11 10 9 32 32 H 1.08996 * 109.47189 * 299.99557 * 11 10 9 33 33 H 0.97001 * 119.99713 * 345.00063 * 12 11 10 34 34 H 1.08004 * 119.99572 * 0.02562 * 17 16 13 35 35 H 1.08004 * 120.00400 * 180.25458 * 18 17 16 36 36 H 0.96997 * 120.00265 * 0.02562 * 21 20 19 37 37 H 0.97006 * 119.99267 * 179.97438 * 21 20 19 38 38 H 1.08005 * 119.99901 * 179.97438 * 24 19 18 39 39 H 1.07999 * 120.00005 * 0.02562 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0847 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6619 -0.0005 11 6 1.4806 -4.9870 -0.0012 12 7 2.4327 -6.1005 -0.0018 13 16 1.9180 -7.6303 0.3686 14 8 1.1551 -7.5189 1.5623 15 8 3.0536 -8.4759 0.2481 16 6 0.7944 -8.1230 -0.8960 17 6 -0.5565 -7.8630 -0.7601 18 6 -1.4374 -8.2452 -1.7544 19 6 -0.9688 -8.8965 -2.8800 20 16 -2.0925 -9.3892 -4.1447 21 7 -2.6072 -10.9189 -3.7743 22 8 -3.2280 -8.5435 -4.0243 23 8 -1.3294 -9.5005 -5.3383 24 6 0.3813 -9.1616 -3.0133 25 6 1.2629 -8.7746 -2.0214 26 1 -0.4850 0.8400 -0.0004 27 1 0.6243 -2.5568 -0.8903 28 1 0.6249 -2.5571 0.8896 29 1 2.8722 -3.6042 0.8894 30 1 2.8722 -3.6041 -0.8906 31 1 0.8543 -5.0446 -0.8914 32 1 0.8538 -5.0451 0.8886 33 1 3.3646 -5.9416 -0.2192 34 1 -0.9231 -7.3574 0.1211 35 1 -2.4923 -8.0384 -1.6501 36 1 -2.2784 -11.3614 -2.9762 37 1 -3.2382 -11.3722 -4.3551 38 1 0.7474 -9.6708 -3.8926 39 1 2.3177 -8.9821 -2.1254 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609146685.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:42 Heat of formation + Delta-G solvation = -165.044874 kcal Electronic energy + Delta-G solvation = -25560.046078 eV Core-core repulsion = 21527.021292 eV Total energy + Delta-G solvation = -4033.024786 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.42748 -38.51339 -38.35070 -37.42752 -37.10571 -37.03783 -35.18298 -34.12240 -32.92801 -32.65608 -32.37766 -28.22681 -25.19734 -24.82216 -24.22247 -22.26155 -20.81632 -20.55923 -19.69790 -19.00358 -18.58418 -18.42908 -18.32106 -17.50207 -16.97837 -16.89550 -16.48511 -16.16978 -16.07746 -15.95276 -15.59171 -14.80218 -14.78869 -14.51067 -14.29619 -14.08685 -13.78221 -13.37323 -13.31321 -13.28968 -13.28801 -13.24606 -13.18291 -12.77266 -12.69197 -12.61967 -12.53623 -12.35244 -11.92614 -11.66757 -11.41349 -11.40252 -11.18727 -11.12065 -10.53830 -10.50839 -10.32199 -8.18228 -6.28472 -1.11474 -0.72845 -0.70710 -0.00348 1.42215 1.44210 1.52014 1.67011 1.95779 2.14883 2.42730 2.54578 2.63437 3.09081 3.15802 3.25152 3.67019 3.71810 3.99400 4.03474 4.18834 4.25155 4.32529 4.45992 4.56238 4.65079 4.68161 4.69920 4.80567 4.97421 5.18147 5.22330 5.23109 5.47931 5.54950 5.76479 5.87798 6.01430 6.26411 6.29307 6.88742 7.40713 8.93199 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.011364 B = 0.002639 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.353758 B =10606.293625 C =12351.163860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.961 3.039 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.021 3.979 10 C -0.105 4.105 11 C 0.117 3.883 12 N -1.104 6.104 13 S 2.712 3.288 14 O -0.977 6.977 15 O -0.971 6.971 16 C -0.630 4.630 17 C -0.054 4.054 18 C -0.045 4.045 19 C -0.629 4.629 20 S 2.729 3.271 21 N -1.230 6.230 22 O -0.989 6.989 23 O -0.986 6.986 24 C -0.043 4.043 25 C -0.046 4.046 26 H 0.263 0.737 27 H -0.001 1.001 28 H -0.003 1.003 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.429 0.571 34 H 0.160 0.840 35 H 0.169 0.831 36 H 0.431 0.569 37 H 0.432 0.568 38 H 0.176 0.824 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.936 -26.247 -6.348 27.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.581 4.581 8 H 0.080 0.920 9 C -0.017 4.017 10 C -0.144 4.144 11 C -0.008 4.008 12 N -0.867 5.867 13 S 2.802 3.198 14 O -0.967 6.967 15 O -0.962 6.962 16 C -0.717 4.717 17 C -0.074 4.074 18 C -0.065 4.065 19 C -0.715 4.715 20 S 2.816 3.184 21 N -0.912 5.912 22 O -0.978 6.978 23 O -0.975 6.975 24 C -0.063 4.063 25 C -0.066 4.066 26 H 0.072 0.928 27 H 0.018 0.982 28 H 0.015 0.985 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.266 0.734 34 H 0.178 0.822 35 H 0.187 0.813 36 H 0.261 0.739 37 H 0.266 0.734 38 H 0.194 0.806 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -2.218 -25.976 -6.363 26.835 hybrid contribution 0.358 0.923 0.120 0.997 sum -1.860 -25.053 -6.242 25.886 Atomic orbital electron populations 1.70075 1.07697 1.27782 1.51686 1.25936 0.95729 1.03228 0.94899 0.85558 0.78290 0.78415 0.79121 1.19220 1.21118 1.19287 1.21677 0.93658 0.92348 1.50435 0.91990 1.18989 0.94510 0.92663 0.95518 1.21619 0.98551 0.92195 1.02033 1.21415 0.91300 0.85866 1.02259 1.55247 1.19900 1.23221 1.88309 1.01262 0.72913 0.72089 0.73561 1.93580 1.73033 1.86253 1.43874 1.93573 1.49800 1.65657 1.87122 1.31371 1.11295 1.11605 1.17442 1.21397 0.91370 0.95086 0.99559 1.21400 1.02046 0.92347 0.90717 1.31061 1.11283 1.12839 1.16344 1.00700 0.72607 0.73009 0.72104 1.52590 1.62981 1.35614 1.40041 1.93604 1.50763 1.67330 1.86150 1.93593 1.72407 1.86451 1.45038 1.21459 0.90929 0.94932 0.98933 1.21414 1.02231 0.92393 0.90583 0.92826 0.98241 0.98463 0.91992 0.91427 0.90958 0.90570 0.73369 0.82244 0.81308 0.73911 0.73396 0.80628 0.81191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.68 13.29 21.45 0.28 -55.39 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.96 43.46 29.54 68.60 2.03 45.48 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.54 -29.76 9.11 25.60 0.23 -29.52 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 9 C 0.02 1.05 4.97 29.85 0.15 1.19 16 10 C -0.10 -3.80 5.29 30.59 0.16 -3.64 16 11 C 0.12 3.40 6.22 86.38 0.54 3.94 16 12 N -1.10 -25.35 6.00 -187.49 -1.12 -26.48 16 13 S 2.71 62.54 5.74 -56.49 -0.32 62.22 16 14 O -0.98 -28.42 16.75 -128.00 -2.14 -30.56 16 15 O -0.97 -24.79 17.28 -128.00 -2.21 -27.01 16 16 C -0.63 -12.67 5.95 22.27 0.13 -12.53 16 17 C -0.05 -1.06 9.52 22.27 0.21 -0.85 16 18 C -0.05 -0.78 9.52 22.27 0.21 -0.57 16 19 C -0.63 -9.82 5.94 22.27 0.13 -9.69 16 20 S 2.73 39.16 6.28 -56.49 -0.35 38.80 16 21 N -1.23 -6.37 9.55 37.02 0.35 -6.02 16 22 O -0.99 -21.56 17.28 -128.00 -2.21 -23.77 16 23 O -0.99 -20.04 17.28 -128.00 -2.21 -22.25 16 24 C -0.04 -0.64 9.52 22.27 0.21 -0.42 16 25 C -0.05 -0.78 9.52 22.27 0.21 -0.57 16 26 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 27 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 28 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 29 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 31 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 32 H 0.08 2.27 7.75 -2.39 -0.02 2.25 16 33 H 0.43 8.19 8.65 -96.74 -0.84 7.35 16 34 H 0.16 2.88 7.61 -2.91 -0.02 2.86 16 35 H 0.17 2.30 7.62 -2.91 -0.02 2.27 16 36 H 0.43 0.17 8.92 -96.75 -0.86 -0.69 16 37 H 0.43 0.85 8.96 -96.74 -0.87 -0.02 16 38 H 0.18 1.73 7.62 -2.91 -0.02 1.70 16 39 H 0.17 2.15 7.62 -2.91 -0.02 2.12 16 Total: -1.00 -83.03 362.86 -6.71 -89.74 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -1.44 Total: 7.44 kcal Atomic # 6 Polarization: -54.86 SS G_CDS: 2.66 Total: -52.20 kcal Atomic # 7 Polarization: -87.40 SS G_CDS: -0.49 Total: -87.89 kcal Atomic # 8 Polarization: -94.81 SS G_CDS: -8.78 Total: -103.59 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: 101.70 SS G_CDS: -0.68 Total: 101.02 kcal Total: -83.03 -6.71 -89.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609146685.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.310 kcal (2) G-P(sol) polarization free energy of solvation -83.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds