Wall clock time and date at job start Wed Apr 1 2020 06:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 114.00724 * 2 1 4 4 C 1.52998 * 109.47418 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47042 * 64.99930 * 4 3 2 6 6 C 1.46500 * 120.00460 * 90.00327 * 5 4 3 7 7 C 1.50691 * 109.47530 * 94.87682 * 6 5 4 8 8 H 1.08001 * 120.00053 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00315 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99618 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00168 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47140 * 90.00500 * 11 9 7 13 13 H 1.48502 * 109.46861 * 210.00262 * 11 9 7 14 14 H 1.48501 * 109.47219 * 330.00276 * 11 9 7 15 15 C 1.34777 * 119.99768 * 269.99634 * 5 4 3 16 16 O 1.21704 * 119.99971 * 5.66146 * 15 5 4 17 17 C 1.46587 * 120.00051 * 185.66367 * 15 5 4 18 18 C 1.36650 * 125.45713 * 186.79010 * 17 15 5 19 19 C 1.37464 * 113.29722 * 179.97438 * 18 17 15 20 20 C 1.33825 * 115.10283 * 0.02562 * 19 18 17 21 21 S 1.76196 * 124.52362 * 179.97438 * 20 19 18 22 22 N 1.65596 * 107.22036 * 89.99741 * 21 20 19 23 23 O 1.42099 * 106.39822 * 203.53618 * 21 20 19 24 24 O 1.42094 * 106.40355 * 336.45263 * 21 20 19 25 25 S 1.70621 * 110.94984 * 359.75777 * 20 19 18 26 26 H 1.09005 * 109.47229 * 300.00434 * 1 2 3 27 27 H 1.08999 * 109.46890 * 60.00211 * 1 2 3 28 28 H 1.08997 * 109.47737 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47520 * 59.99073 * 3 2 1 30 30 H 1.09003 * 109.46663 * 299.99827 * 3 2 1 31 31 H 1.08992 * 109.46896 * 304.99441 * 4 3 2 32 32 H 1.08999 * 109.46915 * 184.99493 * 4 3 2 33 33 H 1.09005 * 109.47057 * 214.88144 * 6 5 4 34 34 H 1.09003 * 109.46724 * 334.87527 * 6 5 4 35 35 H 0.97005 * 119.99810 * 179.97438 * 10 9 7 36 36 H 1.08000 * 123.35287 * 359.94204 * 18 17 15 37 37 H 1.08002 * 122.45599 * 179.97438 * 19 18 17 38 38 H 0.97001 * 119.99783 * 359.97438 * 22 21 20 39 39 H 0.97001 * 119.99904 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1844 0.0006 5 7 3.9767 0.5637 -1.2509 6 6 4.2885 1.3994 -2.4130 7 6 5.7685 1.6804 -2.4472 8 1 6.4127 1.2765 -1.6802 9 6 6.3006 2.4522 -3.4582 10 7 5.5162 2.9436 -4.3925 11 14 8.1354 2.8000 -3.5010 12 1 8.8216 1.7420 -4.2852 13 1 8.3742 4.1207 -4.1365 14 1 8.6691 2.8137 -2.1152 15 6 4.0959 -0.7763 -1.3330 16 8 3.7396 -1.4770 -0.4039 17 6 4.6546 -1.3897 -2.5414 18 6 4.7057 -2.7308 -2.7986 19 6 5.2826 -3.0306 -4.0098 20 6 5.6911 -1.9733 -4.7212 21 16 6.4618 -2.0712 -6.3027 22 7 5.2581 -2.0190 -7.4387 23 8 7.2123 -0.8746 -6.4580 24 8 7.0386 -3.3670 -6.3884 25 16 5.3606 -0.5175 -3.8950 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.6887 1.8464 0.8899 30 1 1.6887 1.8462 -0.8900 31 1 3.8507 0.5684 0.8427 32 1 3.9786 2.1763 0.0901 33 1 3.9965 0.8777 -3.3245 34 1 3.7416 2.3396 -2.3415 35 1 5.8904 3.4870 -5.1037 36 1 4.3306 -3.4807 -2.1179 37 1 5.3987 -4.0452 -4.3612 38 1 4.3316 -1.9469 -7.1606 39 1 5.4795 -2.0604 -8.3822 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610987939.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:56:34 Heat of formation + Delta-G solvation = -117.867939 kcal Electronic energy + Delta-G solvation = -27208.796623 eV Core-core repulsion = 23177.817582 eV Total energy + Delta-G solvation = -4030.979041 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.30658 -37.54689 -36.93480 -36.57203 -35.47485 -35.15582 -33.08969 -32.99584 -30.69116 -28.89856 -27.46867 -26.16663 -24.69294 -23.42196 -22.48555 -20.05579 -19.83993 -18.77620 -17.49845 -17.19237 -16.99999 -16.72826 -16.31261 -15.90082 -15.50631 -15.41362 -15.06867 -14.77151 -14.52954 -14.45318 -13.96255 -13.38580 -12.76398 -12.71297 -12.54511 -12.42456 -12.26511 -11.89279 -11.81215 -11.73750 -11.65678 -11.63504 -11.55101 -11.17447 -10.95665 -10.91958 -10.79642 -10.41513 -10.30694 -10.09387 -9.56226 -9.44452 -9.26690 -8.89812 -8.64013 -7.99980 -7.75264 -6.58486 -4.61289 0.65215 0.91953 2.33486 2.64099 2.74836 3.14957 3.21996 3.27228 3.52210 3.68528 3.85827 3.95902 4.08024 4.13538 4.78951 5.17924 5.24786 5.29858 5.37807 5.53099 5.56432 5.61196 5.75843 5.76676 5.90927 5.93134 6.13546 6.21232 6.31581 6.35007 6.58337 6.71527 6.88601 7.16905 7.20321 7.37399 7.46322 7.51479 8.05430 8.40155 8.84931 8.98287 10.43228 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.010558 B = 0.005244 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.354399 B = 5338.506538 C = 7140.103114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.367 6.367 3 C 0.043 3.957 4 C 0.126 3.874 5 N -0.595 5.595 6 C 0.220 3.780 7 C -0.539 4.539 8 H 0.076 0.924 9 C 0.081 3.919 10 N -0.859 5.859 11 Si 0.886 3.114 12 H -0.260 1.260 13 H -0.277 1.277 14 H -0.267 1.267 15 C 0.585 3.415 16 O -0.535 6.535 17 C -0.255 4.255 18 C -0.114 4.114 19 C -0.031 4.031 20 C -0.928 4.928 21 S 2.727 3.273 22 N -1.252 6.252 23 O -0.962 6.962 24 O -0.974 6.974 25 S 0.526 5.474 26 H 0.034 0.966 27 H 0.035 0.965 28 H 0.080 0.920 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.040 0.960 34 H 0.056 0.944 35 H 0.278 0.722 36 H 0.143 0.857 37 H 0.134 0.866 38 H 0.417 0.583 39 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.733 -2.850 -1.020 7.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C -0.035 4.035 4 C 0.003 3.997 5 N -0.327 5.327 6 C 0.098 3.902 7 C -0.586 4.586 8 H 0.095 0.905 9 C -0.130 4.130 10 N -0.493 5.493 11 Si 0.711 3.289 12 H -0.185 1.185 13 H -0.202 1.202 14 H -0.191 1.191 15 C 0.373 3.627 16 O -0.415 6.415 17 C -0.381 4.381 18 C -0.148 4.148 19 C -0.069 4.069 20 C -1.134 5.134 21 S 2.815 3.185 22 N -0.925 5.925 23 O -0.952 6.952 24 O -0.964 6.964 25 S 0.812 5.188 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.099 0.901 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.115 0.885 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.161 0.839 37 H 0.152 0.848 38 H 0.243 0.757 39 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -5.495 -1.853 -1.198 5.922 hybrid contribution -0.371 -0.940 0.326 1.062 sum -5.867 -2.792 -0.872 6.555 Atomic orbital electron populations 1.22678 0.82459 1.02210 0.99189 1.88155 1.18253 1.26974 1.95154 1.23051 0.95211 0.85306 0.99895 1.21366 0.91323 0.99437 0.87612 1.47915 1.65241 1.05612 1.13914 1.19708 0.96887 0.91405 0.82227 1.21685 0.92810 1.32366 1.11692 0.90539 1.25019 0.99453 0.93876 0.94621 1.69867 1.36111 1.31093 1.12209 0.86595 0.83904 0.79098 0.79328 1.18456 1.20220 1.19134 1.16942 0.78087 0.82101 0.85570 1.90750 1.49998 1.61838 1.38886 1.25477 1.09986 0.99366 1.03226 1.20521 1.02204 0.94470 0.97583 1.19258 0.96273 0.97813 0.93526 1.35930 1.32356 1.14953 1.30132 1.00571 0.72017 0.73784 0.72095 1.53100 1.23380 1.95056 1.20991 1.93627 1.68018 1.47974 1.85532 1.93538 1.75074 1.41466 1.86310 1.86483 1.39092 0.92353 1.00890 0.94731 0.94632 0.90132 0.93067 0.93174 0.89829 0.88504 0.94346 0.92632 0.91212 0.83923 0.84794 0.75668 0.75499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.37 -6.29 9.25 -48.71 -0.45 -6.74 16 3 C 0.04 0.65 6.28 37.16 0.23 0.88 16 4 C 0.13 2.12 5.82 -4.04 -0.02 2.09 16 5 N -0.60 -11.89 2.45 -176.65 -0.43 -12.33 16 6 C 0.22 4.65 4.72 -5.20 -0.02 4.62 16 7 C -0.54 -12.30 6.57 -34.45 -0.23 -12.53 16 8 H 0.08 1.80 7.81 -52.49 -0.41 1.39 16 9 C 0.08 1.89 4.84 -17.82 -0.09 1.80 16 10 N -0.86 -20.51 13.29 55.43 0.74 -19.77 16 11 Si 0.89 19.22 29.54 -169.99 -5.02 14.20 16 12 H -0.26 -5.89 7.11 56.52 0.40 -5.49 16 13 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 14 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 15 C 0.59 12.58 7.29 -12.89 -0.09 12.49 16 16 O -0.54 -12.37 15.40 -8.30 -0.13 -12.50 16 17 C -0.26 -5.23 6.19 -36.79 -0.23 -5.46 16 18 C -0.11 -2.11 10.02 -40.44 -0.41 -2.51 16 19 C -0.03 -0.53 9.77 -41.41 -0.40 -0.93 16 20 C -0.93 -16.85 6.32 29.18 0.18 -16.67 16 21 S 2.73 45.77 6.41 -107.50 -0.69 45.08 16 22 N -1.25 -14.60 9.55 60.35 0.58 -14.03 16 23 O -0.96 -19.64 17.82 -57.18 -1.02 -20.66 16 24 O -0.97 -18.13 17.74 -57.18 -1.01 -19.14 16 25 S 0.53 10.76 15.27 -107.50 -1.64 9.12 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.45 7.51 -51.93 -0.39 1.06 16 32 H 0.10 1.45 8.07 -51.93 -0.42 1.03 16 33 H 0.04 0.85 4.96 -26.07 -0.13 0.72 16 34 H 0.06 1.18 8.04 -51.93 -0.42 0.76 16 35 H 0.28 6.40 8.31 -40.82 -0.34 6.06 16 36 H 0.14 2.45 8.06 -52.49 -0.42 2.02 16 37 H 0.13 1.99 8.02 -52.49 -0.42 1.57 16 38 H 0.42 3.99 8.92 -34.47 -0.31 3.68 16 39 H 0.42 3.78 8.96 -34.47 -0.31 3.47 16 LS Contribution 356.24 15.07 5.37 5.37 Total: -1.00 -31.48 356.24 -8.15 -39.63 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -4.47 Total: 6.47 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 0.04 Total: -14.70 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 0.88 Total: -46.13 kcal Atomic # 8 Polarization: -56.42 SS G_CDS: -2.61 Total: -59.04 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.20 kcal Atomic # 16 Polarization: 56.53 SS G_CDS: -2.33 Total: 54.20 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.48 -8.15 -39.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610987939.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.239 kcal (2) G-P(sol) polarization free energy of solvation -31.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds