Wall clock time and date at job start Wed Apr 1 2020 06:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 114.00724 * 2 1 4 4 C 1.52998 * 109.47418 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47042 * 64.99930 * 4 3 2 6 6 C 1.46500 * 120.00460 * 90.00327 * 5 4 3 7 7 C 1.50691 * 109.47530 * 94.87682 * 6 5 4 8 8 H 1.08001 * 120.00053 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00315 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99618 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00168 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47140 * 90.00500 * 11 9 7 13 13 H 1.48502 * 109.46861 * 210.00262 * 11 9 7 14 14 H 1.48501 * 109.47219 * 330.00276 * 11 9 7 15 15 C 1.34777 * 119.99768 * 269.99634 * 5 4 3 16 16 O 1.21704 * 119.99971 * 5.66146 * 15 5 4 17 17 C 1.46587 * 120.00051 * 185.66367 * 15 5 4 18 18 C 1.36650 * 125.45713 * 186.79010 * 17 15 5 19 19 C 1.37464 * 113.29722 * 179.97438 * 18 17 15 20 20 C 1.33825 * 115.10283 * 0.02562 * 19 18 17 21 21 S 1.76196 * 124.52362 * 179.97438 * 20 19 18 22 22 N 1.65596 * 107.22036 * 89.99741 * 21 20 19 23 23 O 1.42099 * 106.39822 * 203.53618 * 21 20 19 24 24 O 1.42094 * 106.40355 * 336.45263 * 21 20 19 25 25 S 1.70621 * 110.94984 * 359.75777 * 20 19 18 26 26 H 1.09005 * 109.47229 * 300.00434 * 1 2 3 27 27 H 1.08999 * 109.46890 * 60.00211 * 1 2 3 28 28 H 1.08997 * 109.47737 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47520 * 59.99073 * 3 2 1 30 30 H 1.09003 * 109.46663 * 299.99827 * 3 2 1 31 31 H 1.08992 * 109.46896 * 304.99441 * 4 3 2 32 32 H 1.08999 * 109.46915 * 184.99493 * 4 3 2 33 33 H 1.09005 * 109.47057 * 214.88144 * 6 5 4 34 34 H 1.09003 * 109.46724 * 334.87527 * 6 5 4 35 35 H 0.97005 * 119.99810 * 179.97438 * 10 9 7 36 36 H 1.08000 * 123.35287 * 359.94204 * 18 17 15 37 37 H 1.08002 * 122.45599 * 179.97438 * 19 18 17 38 38 H 0.97001 * 119.99783 * 359.97438 * 22 21 20 39 39 H 0.97001 * 119.99904 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1844 0.0006 5 7 3.9767 0.5637 -1.2509 6 6 4.2885 1.3994 -2.4130 7 6 5.7685 1.6804 -2.4472 8 1 6.4127 1.2765 -1.6802 9 6 6.3006 2.4522 -3.4582 10 7 5.5162 2.9436 -4.3925 11 14 8.1354 2.8000 -3.5010 12 1 8.8216 1.7420 -4.2852 13 1 8.3742 4.1207 -4.1365 14 1 8.6691 2.8137 -2.1152 15 6 4.0959 -0.7763 -1.3330 16 8 3.7396 -1.4770 -0.4039 17 6 4.6546 -1.3897 -2.5414 18 6 4.7057 -2.7308 -2.7986 19 6 5.2826 -3.0306 -4.0098 20 6 5.6911 -1.9733 -4.7212 21 16 6.4618 -2.0712 -6.3027 22 7 5.2581 -2.0190 -7.4387 23 8 7.2123 -0.8746 -6.4580 24 8 7.0386 -3.3670 -6.3884 25 16 5.3606 -0.5175 -3.8950 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.6887 1.8464 0.8899 30 1 1.6887 1.8462 -0.8900 31 1 3.8507 0.5684 0.8427 32 1 3.9786 2.1763 0.0901 33 1 3.9965 0.8777 -3.3245 34 1 3.7416 2.3396 -2.3415 35 1 5.8904 3.4870 -5.1037 36 1 4.3306 -3.4807 -2.1179 37 1 5.3987 -4.0452 -4.3612 38 1 4.3316 -1.9469 -7.1606 39 1 5.4795 -2.0604 -8.3822 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610987939.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:56:33 Heat of formation + Delta-G solvation = -142.257872 kcal Electronic energy + Delta-G solvation = -27209.854250 eV Core-core repulsion = 23177.817582 eV Total energy + Delta-G solvation = -4032.036668 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.88035 -38.85809 -38.35626 -38.03680 -36.94433 -36.79230 -34.77853 -34.08020 -32.12327 -30.36373 -29.10296 -27.27784 -26.14068 -25.10377 -23.85400 -21.50224 -21.29796 -20.10901 -19.10017 -18.68138 -18.42540 -18.18148 -17.61006 -17.16755 -16.92331 -16.70802 -16.59081 -16.24560 -16.09234 -15.82612 -15.37787 -14.87176 -14.40957 -14.34518 -14.01532 -13.94172 -13.51074 -13.30204 -13.22799 -13.18586 -13.12381 -13.06006 -13.00220 -12.70371 -12.59959 -12.43551 -12.14571 -11.97952 -11.79047 -11.37428 -11.11820 -10.99066 -10.64524 -10.52537 -10.19614 -9.57597 -9.33318 -8.35337 -6.40714 -0.79401 -0.51947 0.76605 1.10860 1.26644 1.40364 1.48596 1.50844 2.15258 2.20341 2.27117 2.38257 2.63711 2.98557 3.00399 3.68893 3.79629 4.16488 4.24375 4.34525 4.41403 4.49159 4.53911 4.55710 4.59147 4.70400 4.84255 4.88172 4.92544 5.03950 5.09642 5.25900 5.43459 5.54946 5.71032 5.78955 6.34478 6.34974 6.40966 6.65416 7.15756 7.27477 8.66442 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.010558 B = 0.005244 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.354399 B = 5338.506538 C = 7140.103114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.048 3.952 4 C 0.118 3.882 5 N -0.594 5.594 6 C 0.230 3.770 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.059 3.941 10 N -0.879 5.879 11 Si 0.914 3.086 12 H -0.277 1.277 13 H -0.270 1.270 14 H -0.263 1.263 15 C 0.579 3.421 16 O -0.559 6.559 17 C -0.270 4.270 18 C -0.106 4.106 19 C -0.019 4.019 20 C -0.918 4.918 21 S 2.749 3.251 22 N -1.230 6.230 23 O -1.000 7.000 24 O -0.989 6.989 25 S 0.477 5.523 26 H 0.056 0.944 27 H 0.042 0.958 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.112 0.888 33 H 0.037 0.963 34 H 0.054 0.946 35 H 0.278 0.722 36 H 0.158 0.842 37 H 0.167 0.833 38 H 0.429 0.571 39 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.605 -3.730 -1.355 8.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.030 4.030 4 C -0.004 4.004 5 N -0.324 5.324 6 C 0.107 3.893 7 C -0.588 4.588 8 H 0.081 0.919 9 C -0.149 4.149 10 N -0.514 5.514 11 Si 0.738 3.262 12 H -0.202 1.202 13 H -0.194 1.194 14 H -0.187 1.187 15 C 0.367 3.633 16 O -0.440 6.440 17 C -0.395 4.395 18 C -0.141 4.141 19 C -0.056 4.056 20 C -1.122 5.122 21 S 2.836 3.164 22 N -0.912 5.912 23 O -0.989 6.989 24 O -0.978 6.978 25 S 0.761 5.239 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.130 0.870 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.176 0.824 37 H 0.184 0.816 38 H 0.259 0.741 39 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -6.383 -2.672 -1.506 7.081 hybrid contribution -0.163 -0.870 0.384 0.965 sum -6.545 -3.542 -1.121 7.526 Atomic orbital electron populations 1.22847 0.80411 1.03050 1.00583 1.88097 1.20652 1.28152 1.95460 1.23026 0.93512 0.85019 1.01403 1.21622 0.93182 0.99720 0.85910 1.47983 1.64606 1.05250 1.14562 1.19519 0.95886 0.91276 0.82639 1.21623 0.93465 1.32429 1.11280 0.91881 1.25299 1.00833 0.94115 0.94666 1.69890 1.36608 1.32150 1.12730 0.86177 0.82131 0.78672 0.79173 1.20244 1.19424 1.18669 1.17147 0.77988 0.82508 0.85666 1.90725 1.51309 1.62272 1.39696 1.25571 1.10762 1.00150 1.03003 1.20843 1.01167 0.94011 0.98064 1.19610 0.94408 0.99067 0.92517 1.36012 1.31460 1.13889 1.30868 0.99793 0.72039 0.72769 0.71820 1.52587 1.23057 1.94549 1.20962 1.93594 1.69817 1.49560 1.85916 1.93524 1.75990 1.41901 1.86429 1.86609 1.41329 0.93847 1.02161 0.92556 0.93924 0.89682 0.89854 0.93160 0.90725 0.86968 0.94655 0.92822 0.91260 0.82403 0.81562 0.74058 0.73578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 113.37 1.25 1.90 16 2 O -0.40 -13.46 9.25 -136.09 -1.26 -14.72 16 3 C 0.05 1.37 6.28 71.98 0.45 1.82 16 4 C 0.12 3.92 5.82 86.38 0.50 4.42 16 5 N -0.59 -23.76 2.45 -831.00 -2.04 -25.80 16 6 C 0.23 9.77 4.72 85.63 0.40 10.17 16 7 C -0.54 -25.07 6.57 25.60 0.17 -24.90 16 8 H 0.06 3.03 7.81 -2.91 -0.02 3.01 16 9 C 0.06 2.77 4.84 84.65 0.41 3.18 16 10 N -0.88 -42.24 13.29 21.45 0.28 -41.96 16 11 Si 0.91 39.42 29.54 68.60 2.03 41.45 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 13 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 14 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 15 C 0.58 24.89 7.29 86.42 0.63 25.52 16 16 O -0.56 -25.79 15.40 8.53 0.13 -25.66 16 17 C -0.27 -10.95 6.19 24.08 0.15 -10.80 16 18 C -0.11 -3.74 10.02 21.72 0.22 -3.52 16 19 C -0.02 -0.59 9.77 21.08 0.21 -0.38 16 20 C -0.92 -31.87 6.32 66.82 0.42 -31.45 16 21 S 2.75 87.53 6.41 -56.49 -0.36 87.17 16 22 N -1.23 -25.64 9.55 37.02 0.35 -25.29 16 23 O -1.00 -40.20 17.82 -128.00 -2.28 -42.48 16 24 O -0.99 -34.52 17.74 -128.00 -2.27 -36.79 16 25 S 0.48 19.41 15.27 -56.49 -0.86 18.55 16 26 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.07 2.60 7.51 -2.39 -0.02 2.58 16 32 H 0.11 3.29 8.07 -2.39 -0.02 3.27 16 33 H 0.04 1.58 4.96 -18.83 -0.09 1.49 16 34 H 0.05 2.29 8.04 -2.39 -0.02 2.27 16 35 H 0.28 12.88 8.31 -92.70 -0.77 12.11 16 36 H 0.16 5.07 8.06 -2.91 -0.02 5.05 16 37 H 0.17 4.26 8.02 -2.91 -0.02 4.24 16 38 H 0.43 7.05 8.92 -96.75 -0.86 6.19 16 39 H 0.43 6.66 8.96 -96.75 -0.87 5.80 16 Total: -1.00 -67.10 356.24 -2.16 -69.26 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -0.70 Total: 20.31 kcal Atomic # 6 Polarization: -28.86 SS G_CDS: 4.81 Total: -24.05 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -1.40 Total: -93.05 kcal Atomic # 8 Polarization: -113.96 SS G_CDS: -5.68 Total: -119.65 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Atomic # 16 Polarization: 106.94 SS G_CDS: -1.22 Total: 105.72 kcal Total: -67.10 -2.16 -69.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610987939.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.997 kcal (2) G-P(sol) polarization free energy of solvation -67.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds